mRNA_P-littoralis_Contig714.14.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE) HSP 1 Score: 225 bits (573), Expect = 1.420e-65 Identity = 109/139 (78.42%), Postives = 125/139 (89.93%), Query Frame = 1
Query: 1 VIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVGLRRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQKR 417
++ LDIEWEISAAGAP NPPATIQLAAGK VVIFHVLHGQR+VP ELPD LV+LLED KLTKTGVGIKGDCT+L++ YGVEV+ VDLRSLA+ERKVE+GLRRGLADLCVHLLG+ LPKD +VR+S+WN +LS +QKR
Sbjct: 253 LLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQKR 391
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Match: UPI0011D1BD43 (Werner Syndrome-like exonuclease n=2 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D1BD43) HSP 1 Score: 92.0 bits (227), Expect = 2.990e-20 Identity = 59/138 (42.75%), Postives = 74/138 (53.62%), Query Frame = 1
Query: 1 VIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVGL-RRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQ 411
V+GLDIEW + V+P A +QL G +IF LH + VP L L L + T GVGIK D TKL + YG+ VSR+VDLR+LAMER GL L LL R L K + +SRW+ L+ Q
Sbjct: 44 VVGLDIEWRPNLEPGVVHPVAILQLCVGHSCLIFQFLHAE-CVPASLHAFLANL----RYTFVGVGIKDDATKLRDDYGLAVSRMVDLRALAMERLRNPSFGHMGLKKLVKVLLRRELEKPKEITLSRWDDEALTARQ 176
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 5.000e-20 Identity = 58/141 (41.13%), Postives = 77/141 (54.61%), Query Frame = 1
Query: 1 VIGLDIEWEISAAGAPVNPPATIQLAAGK-VVVIFHVLHG-QRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVGLRRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQKR 417
V+GLD EWE S G NP +T+QL+ F + G ++ P L LLE+ + K GV I D T L YG+EV+ VDLR+ A + VE R LA + LLGR LPKD +R+SRW++ LS +Q R
Sbjct: 422 VLGLDCEWEPSLGGTTPNPVSTVQLSLPDGTAYCFQLQRGNKKTTSSNFPKALQNLLENPSIAKVGVNINSDATYLERDYGIEVANTVDLRTYARQCWVETP-SRSLAGMASSLLGRQLPKDPVIRLSRWSSP-LSDDQVR 560
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 4.430e-19 Identity = 57/139 (41.01%), Postives = 76/139 (54.68%), Query Frame = 1
Query: 1 VIGLDIEWEISAAGAPVNPPATIQLAAGK-VVVIFHVLHGQRAV-PGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVGLRRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQ 411
V+G+D EWE G+ T+QLA +FH+ G R P L LL D +TK GV +KGD ++L YGVE +VDLRS A V++ R LA + LG++L K+ SVR SRW+ AEL+Q Q
Sbjct: 89 VLGMDCEWEPPFDGSSEGAVCTLQLALPDGTAYLFHLQRGTRRTRPSTFNRSLKVLLNDPTITKVGVAVKGDGSRLQRDYGVETCGMVDLRSYARTCWVDLPCR-SLAGMVATALGKSLSKNPSVRFSRWSQAELTQNQ 226
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Match: A0A059CJD2_EUCGR (3'-5' exonuclease domain-containing protein (Fragment) n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059CJD2_EUCGR) HSP 1 Score: 87.8 bits (216), Expect = 6.650e-19 Identity = 56/138 (40.58%), Postives = 76/138 (55.07%), Query Frame = 1
Query: 1 VIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVGLR-RGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQ 411
V+GLDIEW + V+P AT+QL G+ +IF +LH + +PG L L L T GVGIK D KL + YG+ VSR+VDLR LA+ R + L GL L +L + L K V +S+W+ L+ Q
Sbjct: 44 VVGLDIEWRPNLEPGVVHPVATLQLCVGRSCLIFQILHAEY-IPGSLHAFLGNL----NYTFVGVGIKDDAMKLRDDYGLTVSRMVDLRGLAVGRWRNLSLGYMGLKKLVKVILRKDLEKPKDVTLSQWDDKVLTDRQ 176
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Match: A0A6H5JCK3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK3_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 4.850e-17 Identity = 51/141 (36.17%), Postives = 76/141 (53.90%), Query Frame = 1
Query: 1 VIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLH---GQRAVPGELPDELVELLEDDKLTK-TGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVGLRRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQ 411
V+GLD EWE + GA NP +T+QL+ LH + +P L LLE+ + GV + D + L YGV+V+ ++D+R+ A E VE R LA + L+G+ LPKD ++R+SRW+ L+ EQ
Sbjct: 154 VLGLDCEWEPALGGATPNPVSTLQLSLPDGTAYCFHLHRRTNRATATSTIPKVLQSLLENVPSQRYVGVNVNSDASLLERYYGVKVANMIDVRTHARECWVETS-SRSLAGMASSLVGKALPKDPTIRLSRWSNPSLTDEQ 293
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Match: A0A7J7HIL9_CAMSI (3'-5' exonuclease domain-containing protein n=1 Tax=Camellia sinensis TaxID=4442 RepID=A0A7J7HIL9_CAMSI) HSP 1 Score: 82.4 bits (202), Expect = 9.910e-17 Identity = 48/137 (35.04%), Postives = 72/137 (52.55%), Query Frame = 1
Query: 1 VIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVGLRRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQ 411
++GLDIEW + + NP AT+QL G+ +IF +L+ E+P L++ L + T GVGI D KL YG+ V+ VDLR+LA + + GL + +LG+ + K + SRW+ L EQ
Sbjct: 62 IVGLDIEWRPNDRYSD-NPAATLQLCVGRRCLIFQLLYSP-----EIPQSLIDFLNNPIYTFVGVGINSDVEKLIEDYGLSVATTVDLRTLAADCGMTELRNAGLKTMAREVLGKVIEKPQRITRSRWDNEWLYPEQ 192
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Match: A0A4S4EXV1_CAMSI (3'-5' exonuclease domain-containing protein n=3 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4EXV1_CAMSI) HSP 1 Score: 82.4 bits (202), Expect = 1.160e-16 Identity = 48/137 (35.04%), Postives = 72/137 (52.55%), Query Frame = 1
Query: 1 VIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVGLRRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQ 411
++GLDIEW + + NP AT+QL G+ +IF +L+ E+P L++ L + T GVGI D KL YG+ V+ VDLR+LA + + GL + +LG+ + K + SRW+ L EQ
Sbjct: 62 IVGLDIEWRPNDRYSD-NPAATLQLCVGRRCLIFQLLYSP-----EIPQSLIDFLNNPIYTFVGVGINSDVEKLIEDYGLSVATTVDLRTLAADCGMTELRNAGLKTMAREVLGKVIEKPQRITRSRWDNEWLYPEQ 192
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Match: A0A059CK88_EUCGR (3'-5' exonuclease domain-containing protein n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059CK88_EUCGR) HSP 1 Score: 80.5 bits (197), Expect = 4.630e-16 Identity = 52/138 (37.68%), Postives = 72/138 (52.17%), Query Frame = 1
Query: 1 VIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVGLR-RGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQ 411
V+GLDIEW + V+P AT+QL +IF +LH + +P L L + T GVGIK D KLS+ +G+ VSR+VDLR LA+ R L GL L +L + L K + +S W+ L+ Q
Sbjct: 44 VVGLDIEWRPNLEPGVVHPVATLQLCVAHSCLIFQILHAEY-----VPASLHAFLGNLDYTFVGVGIKDDAMKLSDDFGLVVSRMVDLRGLAVGRWRNPSLGYMGLKKLVKVVLRKDLEKPKEITLSHWDEKTLTAPQ 176
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Match: A0A0E0JIE7_ORYPU (3'-5' exonuclease domain-containing protein n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0JIE7_ORYPU) HSP 1 Score: 80.5 bits (197), Expect = 5.310e-16 Identity = 46/138 (33.33%), Postives = 72/138 (52.17%), Query Frame = 1
Query: 1 VIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVGLRR-GLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQ 411
++G+D+EW ++ P A +Q+ G +I +LH +PD L + L D + GVGI D KL YG++V DLR +A E+ + LRR GL L ++G + K VR+S W++ +L+ EQ
Sbjct: 53 IVGIDVEWRPASGSRGRGPVAVLQICVGHRCLIVQILHADY-----VPDLLRDFLADGRFGFAGVGIDDDVFKLKVHYGLKVENAADLRDVAAEKLGKPALRRTGLQGLVWEVMGVWMEKPYDVRVSDWDSRQLTPEQ 185 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig714.14.1 >prot_P-littoralis_Contig714.14.1 ID=prot_P-littoralis_Contig714.14.1|Name=mRNA_P-littoralis_Contig714.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp VIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDEback to top mRNA from alignment at P-littoralis_Contig714:138752..139171- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig714.14.1 ID=mRNA_P-littoralis_Contig714.14.1|Name=mRNA_P-littoralis_Contig714.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig714:138752..139171- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig714:138752..139171- >mRNA_P-littoralis_Contig714.14.1 ID=mRNA_P-littoralis_Contig714.14.1|Name=mRNA_P-littoralis_Contig714.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig714:138752..139171- (Pylaiella littoralis U1_48)back to top |