mRNA_P-littoralis_Contig714.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig714.14.1
Unique NamemRNA_P-littoralis_Contig714.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 1.420e-65
Identity = 109/139 (78.42%), Postives = 125/139 (89.93%), Query Frame = 1
Query:    1 VIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVGLRRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQKR 417
            ++ LDIEWEISAAGAP NPPATIQLAAGK VVIFHVLHGQR+VP ELPD LV+LLED KLTKTGVGIKGDCT+L++ YGVEV+  VDLRSLA+ERKVE+GLRRGLADLCVHLLG+ LPKD +VR+S+WN  +LS +QKR
Sbjct:  253 LLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQKR 391          
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Match: UPI0011D1BD43 (Werner Syndrome-like exonuclease n=2 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D1BD43)

HSP 1 Score: 92.0 bits (227), Expect = 2.990e-20
Identity = 59/138 (42.75%), Postives = 74/138 (53.62%), Query Frame = 1
Query:    1 VIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVGL-RRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQ 411
            V+GLDIEW  +     V+P A +QL  G   +IF  LH +  VP  L   L  L    + T  GVGIK D TKL + YG+ VSR+VDLR+LAMER         GL  L   LL R L K   + +SRW+   L+  Q
Sbjct:   44 VVGLDIEWRPNLEPGVVHPVAILQLCVGHSCLIFQFLHAE-CVPASLHAFLANL----RYTFVGVGIKDDATKLRDDYGLAVSRMVDLRALAMERLRNPSFGHMGLKKLVKVLLRRELEKPKEITLSRWDDEALTARQ 176          
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 5.000e-20
Identity = 58/141 (41.13%), Postives = 77/141 (54.61%), Query Frame = 1
Query:    1 VIGLDIEWEISAAGAPVNPPATIQLAAGK-VVVIFHVLHG-QRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVGLRRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQKR 417
            V+GLD EWE S  G   NP +T+QL+        F +  G ++      P  L  LLE+  + K GV I  D T L   YG+EV+  VDLR+ A +  VE    R LA +   LLGR LPKD  +R+SRW++  LS +Q R
Sbjct:  422 VLGLDCEWEPSLGGTTPNPVSTVQLSLPDGTAYCFQLQRGNKKTTSSNFPKALQNLLENPSIAKVGVNINSDATYLERDYGIEVANTVDLRTYARQCWVETP-SRSLAGMASSLLGRQLPKDPVIRLSRWSSP-LSDDQVR 560          
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.430e-19
Identity = 57/139 (41.01%), Postives = 76/139 (54.68%), Query Frame = 1
Query:    1 VIGLDIEWEISAAGAPVNPPATIQLAAGK-VVVIFHVLHGQRAV-PGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVGLRRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQ 411
            V+G+D EWE    G+      T+QLA       +FH+  G R   P      L  LL D  +TK GV +KGD ++L   YGVE   +VDLRS A    V++  R  LA +    LG++L K+ SVR SRW+ AEL+Q Q
Sbjct:   89 VLGMDCEWEPPFDGSSEGAVCTLQLALPDGTAYLFHLQRGTRRTRPSTFNRSLKVLLNDPTITKVGVAVKGDGSRLQRDYGVETCGMVDLRSYARTCWVDLPCR-SLAGMVATALGKSLSKNPSVRFSRWSQAELTQNQ 226          
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Match: A0A059CJD2_EUCGR (3'-5' exonuclease domain-containing protein (Fragment) n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059CJD2_EUCGR)

HSP 1 Score: 87.8 bits (216), Expect = 6.650e-19
Identity = 56/138 (40.58%), Postives = 76/138 (55.07%), Query Frame = 1
Query:    1 VIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVGLR-RGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQ 411
            V+GLDIEW  +     V+P AT+QL  G+  +IF +LH +  +PG L   L  L      T  GVGIK D  KL + YG+ VSR+VDLR LA+ R   + L   GL  L   +L + L K   V +S+W+   L+  Q
Sbjct:   44 VVGLDIEWRPNLEPGVVHPVATLQLCVGRSCLIFQILHAEY-IPGSLHAFLGNL----NYTFVGVGIKDDAMKLRDDYGLTVSRMVDLRGLAVGRWRNLSLGYMGLKKLVKVILRKDLEKPKDVTLSQWDDKVLTDRQ 176          
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Match: A0A6H5JCK3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK3_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.850e-17
Identity = 51/141 (36.17%), Postives = 76/141 (53.90%), Query Frame = 1
Query:    1 VIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLH---GQRAVPGELPDELVELLEDDKLTK-TGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVGLRRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQ 411
            V+GLD EWE +  GA  NP +T+QL+          LH    +      +P  L  LLE+    +  GV +  D + L   YGV+V+ ++D+R+ A E  VE    R LA +   L+G+ LPKD ++R+SRW+   L+ EQ
Sbjct:  154 VLGLDCEWEPALGGATPNPVSTLQLSLPDGTAYCFHLHRRTNRATATSTIPKVLQSLLENVPSQRYVGVNVNSDASLLERYYGVKVANMIDVRTHARECWVETS-SRSLAGMASSLVGKALPKDPTIRLSRWSNPSLTDEQ 293          
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Match: A0A7J7HIL9_CAMSI (3'-5' exonuclease domain-containing protein n=1 Tax=Camellia sinensis TaxID=4442 RepID=A0A7J7HIL9_CAMSI)

HSP 1 Score: 82.4 bits (202), Expect = 9.910e-17
Identity = 48/137 (35.04%), Postives = 72/137 (52.55%), Query Frame = 1
Query:    1 VIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVGLRRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQ 411
            ++GLDIEW  +   +  NP AT+QL  G+  +IF +L+       E+P  L++ L +   T  GVGI  D  KL   YG+ V+  VDLR+LA +  +      GL  +   +LG+ + K   +  SRW+   L  EQ
Sbjct:   62 IVGLDIEWRPNDRYSD-NPAATLQLCVGRRCLIFQLLYSP-----EIPQSLIDFLNNPIYTFVGVGINSDVEKLIEDYGLSVATTVDLRTLAADCGMTELRNAGLKTMAREVLGKVIEKPQRITRSRWDNEWLYPEQ 192          
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Match: A0A4S4EXV1_CAMSI (3'-5' exonuclease domain-containing protein n=3 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4EXV1_CAMSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.160e-16
Identity = 48/137 (35.04%), Postives = 72/137 (52.55%), Query Frame = 1
Query:    1 VIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVGLRRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQ 411
            ++GLDIEW  +   +  NP AT+QL  G+  +IF +L+       E+P  L++ L +   T  GVGI  D  KL   YG+ V+  VDLR+LA +  +      GL  +   +LG+ + K   +  SRW+   L  EQ
Sbjct:   62 IVGLDIEWRPNDRYSD-NPAATLQLCVGRRCLIFQLLYSP-----EIPQSLIDFLNNPIYTFVGVGINSDVEKLIEDYGLSVATTVDLRTLAADCGMTELRNAGLKTMAREVLGKVIEKPQRITRSRWDNEWLYPEQ 192          
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Match: A0A059CK88_EUCGR (3'-5' exonuclease domain-containing protein n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059CK88_EUCGR)

HSP 1 Score: 80.5 bits (197), Expect = 4.630e-16
Identity = 52/138 (37.68%), Postives = 72/138 (52.17%), Query Frame = 1
Query:    1 VIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVGLR-RGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQ 411
            V+GLDIEW  +     V+P AT+QL      +IF +LH +      +P  L   L +   T  GVGIK D  KLS+ +G+ VSR+VDLR LA+ R     L   GL  L   +L + L K   + +S W+   L+  Q
Sbjct:   44 VVGLDIEWRPNLEPGVVHPVATLQLCVAHSCLIFQILHAEY-----VPASLHAFLGNLDYTFVGVGIKDDAMKLSDDFGLVVSRMVDLRGLAVGRWRNPSLGYMGLKKLVKVVLRKDLEKPKEITLSHWDEKTLTAPQ 176          
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Match: A0A0E0JIE7_ORYPU (3'-5' exonuclease domain-containing protein n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0JIE7_ORYPU)

HSP 1 Score: 80.5 bits (197), Expect = 5.310e-16
Identity = 46/138 (33.33%), Postives = 72/138 (52.17%), Query Frame = 1
Query:    1 VIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVGLRR-GLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQ 411
            ++G+D+EW  ++      P A +Q+  G   +I  +LH        +PD L + L D +    GVGI  D  KL   YG++V    DLR +A E+  +  LRR GL  L   ++G  + K   VR+S W++ +L+ EQ
Sbjct:   53 IVGIDVEWRPASGSRGRGPVAVLQICVGHRCLIVQILHADY-----VPDLLRDFLADGRFGFAGVGIDDDVFKLKVHYGLKVENAADLRDVAAEKLGKPALRRTGLQGLVWEVMGVWMEKPYDVRVSDWDSRQLTPEQ 185          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig714.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE1.420e-6578.423'-5' exonuclease domain-containing protein n=1 Ta... [more]
UPI0011D1BD432.990e-2042.75Werner Syndrome-like exonuclease n=2 Tax=Syzygium ... [more]
D7FIV2_ECTSI5.000e-2041.133'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JRJ6_9PHAE4.430e-1941.013'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A059CJD2_EUCGR6.650e-1940.583'-5' exonuclease domain-containing protein (Fragm... [more]
A0A6H5JCK3_9PHAE4.850e-1736.173'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A7J7HIL9_CAMSI9.910e-1735.043'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A4S4EXV1_CAMSI1.160e-1635.043'-5' exonuclease domain-containing protein n=3 Ta... [more]
A0A059CK88_EUCGR4.630e-1637.683'-5' exonuclease domain-containing protein n=2 Ta... [more]
A0A0E0JIE7_ORYPU5.310e-1633.333'-5' exonuclease domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig714contigP-littoralis_Contig714:138752..139171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog981085.XP_010111221.1
PFAMsDNA_pol_A_exo1
Model size420
Max annot lvl35493|Streptophyta
KEGG koko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:1901360
Exons1
Evalue2.87e-24
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota,37U7J@33090|Viridiplantae,3GIS0@35493|Streptophyta,4JVWJ@91835|fabids
EC3.1.11.1
DescriptionWerner Syndrome-like
Cds size420
COG categoryL
BRITEko00000,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791489.3907943-CDS-P-littoralis_Contig714:138751..1391711680791489.3907943-CDS-P-littoralis_Contig714:138751..139171Pylaiella littoralis U1_48CDSP-littoralis_Contig714 138752..139171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig714.14.1prot_P-littoralis_Contig714.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig714 138752..139171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig714.14.1

>prot_P-littoralis_Contig714.14.1 ID=prot_P-littoralis_Contig714.14.1|Name=mRNA_P-littoralis_Contig714.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
VIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDE
LVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAMERKVEVG
LRRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQKR*
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mRNA from alignment at P-littoralis_Contig714:138752..139171-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig714.14.1 ID=mRNA_P-littoralis_Contig714.14.1|Name=mRNA_P-littoralis_Contig714.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig714:138752..139171- (Pylaiella littoralis U1_48)
GTCATCGGCTTGGACATCGAGTGGGAGATATCCGCAGCCGGCGCACCGGT AAATCCACCCGCCACGATTCAACTGGCTGCAGGCAAGGTAGTGGTGATAT TTCATGTCTTGCATGGTCAGCGTGCGGTGCCGGGCGAGCTGCCCGACGAG CTGGTGGAGTTATTGGAGGACGACAAACTGACAAAGACGGGGGTCGGGAT AAAGGGAGACTGTACAAAGCTTTCTAACTCGTACGGTGTGGAAGTTTCTC GGGTTGTGGATCTGCGCTCTCTGGCGATGGAGCGAAAAGTAGAGGTGGGG CTCAGGCGGGGGCTGGCCGACTTGTGTGTTCACCTTCTTGGGAGGACGTT GCCCAAGGACTCCTCCGTTCGCATTTCTAGGTGGAACACGGCTGAGCTAT CTCAGGAACAGAAAAGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig714:138752..139171-

>mRNA_P-littoralis_Contig714.14.1 ID=mRNA_P-littoralis_Contig714.14.1|Name=mRNA_P-littoralis_Contig714.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig714:138752..139171- (Pylaiella littoralis U1_48)
GTCATCGGCTTGGACATCGAGTGGGAGATATCCGCAGCCGGCGCACCGGT
AAATCCACCCGCCACGATTCAACTGGCTGCAGGCAAGGTAGTGGTGATAT
TTCATGTCTTGCATGGTCAGCGTGCGGTGCCGGGCGAGCTGCCCGACGAG
CTGGTGGAGTTATTGGAGGACGACAAACTGACAAAGACGGGGGTCGGGAT
AAAGGGAGACTGTACAAAGCTTTCTAACTCGTACGGTGTGGAAGTTTCTC
GGGTTGTGGATCTGCGCTCTCTGGCGATGGAGCGAAAAGTAGAGGTGGGG
CTCAGGCGGGGGCTGGCCGACTTGTGTGTTCACCTTCTTGGGAGGACGTT
GCCCAAGGACTCCTCCGTTCGCATTTCTAGGTGGAACACGGCTGAGCTAT
CTCAGGAACAGAAAAGGTGA
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