mRNA_P-littoralis_Contig71.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig71.7.1
Unique NamemRNA_P-littoralis_Contig71.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig71.7.1 vs. uniprot
Match: A0A6M1YN17_9BACT (HNHc domain-containing protein n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M1YN17_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 2.800e-13
Identity = 48/136 (35.29%), Postives = 67/136 (49.26%), Query Frame = 1
Query:  166 LNDKCINPCHLEIVPRSLDDVWERILKHTRRENDCLLWTGCTNKGYGQTTVYSKTMSAHRASYLIKTKGEPIPCEIDGMTAQVRRMCGKSLCINPDHLDIGSIVSNPQDKAAHGTSMVGERCHLAKISEEKAAQIK 573
            LN   +N C      R  DDV+E   K+T+++ +CL+WTG T+KGY +  +  K  SAHR  +  +  GEPIP   +G    V   C    C+N  HL + S   N +D    G    G R   AK SE+    I+
Sbjct:   49 LNSGNVNSCGCSKKYRDFDDVFE---KNTKKQGECLIWTGTTSKGYPKFKLQGKVYSAHRVVWE-QVFGEPIP---EGKC--VCHHCDNRACVNVGHLFVASRAQNSKDMIRKGRQAKGSRNGSAKFSEKDIISIR 175          
BLAST of mRNA_P-littoralis_Contig71.7.1 vs. uniprot
Match: A0A6M3KWD7_9ZZZZ (Putative homing endonuclease n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6M3KWD7_9ZZZZ)

HSP 1 Score: 71.6 bits (174), Expect = 2.460e-12
Identity = 38/93 (40.86%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  229 WERILKHTRRENDCLLWTGCTNKGYGQTTVYSKTMSAHRASYLIKTKGEPIPCEIDGMTAQVRRMCGKSLCINPDHLDIGSIVSNPQDKAAHG 507
            W+R+    +  NDC LW G T++GYG T   S  +S HR ++  K     IP  +    A VR  CG  LC+NP+HLDIG+   N +D A  G
Sbjct:   26 WKRV--DIKTPNDCWLWKGPTDRGYGVTCDGSNRISTHRMAW--KLINGDIPKFVKTRKALVRHKCGNRLCVNPNHLDIGNYSDNGKDAAREG 114          
BLAST of mRNA_P-littoralis_Contig71.7.1 vs. uniprot
Match: A0A4R8ER33_9ENTR (HNH endonuclease n=1 Tax=Buttiauxella sp. BIGb0552 TaxID=2485120 RepID=A0A4R8ER33_9ENTR)

HSP 1 Score: 69.7 bits (169), Expect = 1.090e-11
Identity = 45/127 (35.43%), Postives = 62/127 (48.82%), Query Frame = 1
Query:  205 VPRSLDDVWERILKHTRRENDCLLWT-GCTNKGYGQTTVYSKTMSAHRASYLIKTKGEPIPCEIDGMTAQVRRMCGKSLCINPDHLDIGSIVSNPQDKAAHGTSMVGERCHLAKISEEKAAQIKISK 582
            +P     + +R+L    +  +C +W     + GYGQ  +  K + A+RASY++  KGE      DGM   +R  C   LCINP+HL +GS   N QD         GER    K+SE     IK SK
Sbjct:    7 LPSKRKSLKDRLLAGCVKTGECWVWNKSVASSGYGQIRLNYKNLRANRASYMV-FKGEIA----DGMV--IRHTCDNKLCINPEHLILGSCKQNSQDMVERDRQAKGERNGRCKLSESDVQAIKDSK 126          
BLAST of mRNA_P-littoralis_Contig71.7.1 vs. uniprot
Match: A0A8F5A6F1_9CAUD (HNH endonuclease n=1 Tax=Salmonella phage vB_SalP_ABTNLsp11242 TaxID=2838911 RepID=A0A8F5A6F1_9CAUD)

HSP 1 Score: 66.2 bits (160), Expect = 2.200e-10
Identity = 43/117 (36.75%), Postives = 61/117 (52.14%), Query Frame = 1
Query:  232 ERILKHTRRENDCLLWT-GCTNKGYGQTTVYSKTMSAHRASYLIKTKGEPIPCEIDGMTAQVRRMCGKSLCINPDHLDIGSIVSNPQDKAAHGTSMVGERCHLAKISEEKAAQIKIS 579
            ER+L    +   C +W     + GYGQ  +  K + A+RAS+++  KGE IP   DGM   +R  C   LCINPDHL +GS   N +D  +      G +    K+SE+   +IK S
Sbjct:   16 ERLLAGCIKTEGCWIWRRSVASSGYGQIRLNYKNLRANRASFMV-FKGE-IP---DGMV--IRHTCDNKLCINPDHLILGSCKQNSEDMVSRDRQAKGIKNGRCKLSEDTVREIKKS 125          
BLAST of mRNA_P-littoralis_Contig71.7.1 vs. uniprot
Match: A0A3Y1IV74_SALET (HNH endonuclease n=28 Tax=root TaxID=1 RepID=A0A3Y1IV74_SALET)

HSP 1 Score: 63.5 bits (153), Expect = 4.090e-9
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 1
Query:  262 NDCLLWTGCTNKGYGQTTVYSKTMSAHRASYLIKTKGEPIPCEIDGMTAQVRRMCGKSLCINPDHLDIGSIVSNPQD 492
            ++C++W GC   GYG  T   +T +AHR  Y I  KG  +  +I+GM   +R  C   LCINPDHL +G+   N  D
Sbjct:    2 SECIIWKGCVKNGYGWRTWRRQTTTAHRIEYCI-AKGIAL-ADIEGMI--IRHQCDNPLCINPDHLVVGTQQQNVND 74          
BLAST of mRNA_P-littoralis_Contig71.7.1 vs. uniprot
Match: A0A142WWL9_9PLAN (HNHc domain-containing protein n=1 Tax=Planctomyces sp. SH-PL14 TaxID=1632864 RepID=A0A142WWL9_9PLAN)

HSP 1 Score: 62.0 bits (149), Expect = 8.530e-9
Identity = 36/100 (36.00%), Postives = 49/100 (49.00%), Query Frame = 1
Query:  220 DDVWERIL-KHTRRENDCLLWTGCTN-KGYGQTTVYSKTMSAHRASYLIKTKGEPIPCEIDGMTAQVRRMCGKSLCINPDHLDIGSIVSNPQDKAAHGTS 513
            D V +R+  K    E  C LW G     GYG   +  + M+ H+ +Y++     P           VR +CG SLCINPDHL +G+   N  D  AHGT+
Sbjct:   14 DGVLDRLTQKSMAAEGGCRLWLGAQRGTGYGAMKISGRVMAVHQVAYVLAHGAIP-------RGRVVRHLCGCSLCINPDHLALGTDRDNALDAVAHGTA 106          
BLAST of mRNA_P-littoralis_Contig71.7.1 vs. uniprot
Match: A0A7C1R2C2_9BACT (HNHc domain-containing protein n=3 Tax=root TaxID=1 RepID=A0A7C1R2C2_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 1.140e-8
Identity = 49/139 (35.25%), Postives = 68/139 (48.92%), Query Frame = 1
Query:  235 RILKHTRRE-NDCLLWTGCTNK-GYGQTTVYSKTMSAHRASYLIKTKGEPIPCEIDGMTAQVRRMCGKSLCINPDHLDIGSIVSNPQDKAAHGT------------------------SMVGERCHLAKISEEKAAQIK 573
            RIL   + E N C +W  C  +  YG+T  +SKT++AHRASY I  KGE IP   +G+  QV   C   LC+NPDHL +G+   N +D    G                         +  GE  HLAK++E+   +I+
Sbjct:  105 RILDGCKEEKNGCWIWQKCRGRQSYGKTGWFSKTVTAHRASY-IAFKGE-IP---EGL--QVCHKCDVRLCVNPDHLWLGTQKDNMEDAKTKGRLKGTPGIKWTDQQRENILKNRQPPNKKGEAHHLAKLNEKNVREIR 236          
BLAST of mRNA_P-littoralis_Contig71.7.1 vs. uniprot
Match: UPI00046F608A (HNH endonuclease n=1 Tax=Paenibacillus ehimensis TaxID=79264 RepID=UPI00046F608A)

HSP 1 Score: 61.2 bits (147), Expect = 1.440e-8
Identity = 42/115 (36.52%), Postives = 56/115 (48.70%), Query Frame = 1
Query:  232 ERILKHTRRENDCLLWTGCTN-KGYGQTTVYSKTMSAHRASYLIKTKGEPIPCEIDGMTAQVRRMCGKSLCINPDHLDIGSIVSNPQDKAAHGTSMVGERCHLAKISEEKAAQIK 573
            +R   +  +   C +W G  N KGYGQ  V      AHR SY +  KG  IP    GM   V   C   LC+NPDHL +G+   N  D        VGER   +K+++EK  +I+
Sbjct:    5 DRFTSNVDKSGACWVWKGSINGKGYGQLNVNGINEMAHRYSYQMH-KGT-IP---KGMF--VMHSCDNRLCVNPDHLIVGTHRDNMDDMINKKRQAVGERVKSSKLTKEKVKEIR 112          
BLAST of mRNA_P-littoralis_Contig71.7.1 vs. uniprot
Match: A0A352V7A0_9SPIR (HNH endonuclease n=1 Tax=Spirochaetia bacterium TaxID=2053615 RepID=A0A352V7A0_9SPIR)

HSP 1 Score: 61.6 bits (148), Expect = 1.460e-8
Identity = 45/132 (34.09%), Postives = 63/132 (47.73%), Query Frame = 1
Query:  199 EIVPRSLDDVWERILKHTRRE----NDCLLWTGCTNKGYGQTTVYSKTMSAHRASYLIKTKGEPIPCEIDGMTAQVRRMCGKSLCINPDHLDIGSIVSNPQDKAAHGT---SMVGERCHLAKISEEKAAQIK 573
            E  P  +++  ERI +H + E      C  WT  T+KGYG   +  K   AHR  ++I T GE      DG+   V   C   LCINPDHL +G+ + N  D    G       GE+   AK+++ +   IK
Sbjct:    3 EFTPEWIEEARERIREHFQYEINKNTGCWEWTKSTSKGYGHLGIRGKFYQAHRLMWII-TNGEIK----DGLF--VCHKCDNRLCINPDHLFLGTNLDNINDAIEKGKWQHQPKGEKNGNAKLTKNQVLNIK 127          
BLAST of mRNA_P-littoralis_Contig71.7.1 vs. uniprot
Match: UPI0009EF3A81 (HNH endonuclease n=2 Tax=Pseudomonas TaxID=286 RepID=UPI0009EF3A81)

HSP 1 Score: 59.7 bits (143), Expect = 7.030e-8
Identity = 41/120 (34.17%), Postives = 59/120 (49.17%), Query Frame = 1
Query:  229 WERILKHTRRENDCLLWTGCTN-KGYGQTTVYSKTMSAHRASYLIKTKGEPIPCEIDGMTAQVRRMCGKSLCINPDHLDIGSIVSNPQDKAAHGTS----MVGERCHLAKISEEKAAQIK 573
            WE++    R E  C  W   T  +GYGQ  V  +   AHR S+ I     PIP    GM   VR  C  SLC+ PDHL++G+   N +D  + G +      GE    AK++  + ++I+
Sbjct:    9 WEKV--PNRPEEGCWEWGASTKPEGYGQMNVNGRPAFAHRVSFEIANG--PIPA---GML--VRHKCDNSLCVRPDHLELGTQTDNMRDMISRGRARHPGQPGELNPAAKLTNAEVSEIR 119          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig71.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6M1YN17_9BACT2.800e-1335.29HNHc domain-containing protein n=1 Tax=Chlamydiae ... [more]
A0A6M3KWD7_9ZZZZ2.460e-1240.86Putative homing endonuclease n=1 Tax=viral metagen... [more]
A0A4R8ER33_9ENTR1.090e-1135.43HNH endonuclease n=1 Tax=Buttiauxella sp. BIGb0552... [more]
A0A8F5A6F1_9CAUD2.200e-1036.75HNH endonuclease n=1 Tax=Salmonella phage vB_SalP_... [more]
A0A3Y1IV74_SALET4.090e-941.56HNH endonuclease n=28 Tax=root TaxID=1 RepID=A0A3Y... [more]
A0A142WWL9_9PLAN8.530e-936.00HNHc domain-containing protein n=1 Tax=Planctomyce... [more]
A0A7C1R2C2_9BACT1.140e-835.25HNHc domain-containing protein n=3 Tax=root TaxID=... [more]
UPI00046F608A1.440e-836.52HNH endonuclease n=1 Tax=Paenibacillus ehimensis T... [more]
A0A352V7A0_9SPIR1.460e-834.09HNH endonuclease n=1 Tax=Spirochaetia bacterium Ta... [more]
UPI0009EF3A817.030e-834.17HNH endonuclease n=2 Tax=Pseudomonas TaxID=286 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig71contigP-littoralis_Contig71:31998..32579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1300345.LF41_2410
PFAMsHNH_3
Model size582
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.57e-13
EggNOG OGsCOG2197@1|root,COG2197@2|Bacteria,1NA3X@1224|Proteobacteria
DescriptionHNH endonuclease
Cds size582
COG categoryKT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791478.7083871-CDS-P-littoralis_Contig71:31997..325791680791478.7083871-CDS-P-littoralis_Contig71:31997..32579Pylaiella littoralis U1_48CDSP-littoralis_Contig71 31998..32579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig71.7.1prot_P-littoralis_Contig71.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig71 31998..32579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig71.7.1

>prot_P-littoralis_Contig71.7.1 ID=prot_P-littoralis_Contig71.7.1|Name=mRNA_P-littoralis_Contig71.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=194bp
EGSCHIWTGRTEGKSDKPVMSRMVNGQSLQKHVQRYVWNLTHPDISKRRT
LSTLCLNDKCINPCHLEIVPRSLDDVWERILKHTRRENDCLLWTGCTNKG
YGQTTVYSKTMSAHRASYLIKTKGEPIPCEIDGMTAQVRRMCGKSLCINP
DHLDIGSIVSNPQDKAAHGTSMVGERCHLAKISEEKAAQIKISK
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mRNA from alignment at P-littoralis_Contig71:31998..32579+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig71.7.1 ID=mRNA_P-littoralis_Contig71.7.1|Name=mRNA_P-littoralis_Contig71.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=582bp|location=Sequence derived from alignment at P-littoralis_Contig71:31998..32579+ (Pylaiella littoralis U1_48)
GAAGGTTCCTGTCACATTTGGACAGGACGTACTGAAGGGAAATCTGACAA GCCGGTTATGAGTAGAATGGTCAATGGGCAGAGTTTACAAAAACATGTGC AGAGATACGTATGGAACCTGACACACCCCGATATATCCAAAAGACGAACA CTGTCAACGTTGTGTTTAAACGATAAATGTATCAACCCCTGTCACCTAGA AATCGTACCCAGATCACTAGATGATGTGTGGGAGAGAATATTGAAACATA CTCGTCGTGAAAATGACTGCTTATTGTGGACAGGGTGTACGAATAAAGGG TACGGTCAAACTACTGTATATAGTAAGACTATGTCTGCCCACAGAGCATC ATACCTGATCAAAACAAAGGGTGAGCCGATCCCGTGTGAGATCGATGGGA TGACTGCACAGGTACGACGCATGTGTGGCAAATCGCTTTGTATCAACCCG GATCACCTCGATATTGGAAGCATTGTTTCTAATCCCCAAGATAAGGCTGC ACATGGAACGAGTATGGTCGGTGAGCGCTGTCACTTAGCAAAAATTTCAG AAGAGAAAGCAGCTCAAATCAAGATATCGAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig71:31998..32579+

>mRNA_P-littoralis_Contig71.7.1 ID=mRNA_P-littoralis_Contig71.7.1|Name=mRNA_P-littoralis_Contig71.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=582bp|location=Sequence derived from alignment at P-littoralis_Contig71:31998..32579+ (Pylaiella littoralis U1_48)
GAAGGTTCCTGTCACATTTGGACAGGACGTACTGAAGGGAAATCTGACAA
GCCGGTTATGAGTAGAATGGTCAATGGGCAGAGTTTACAAAAACATGTGC
AGAGATACGTATGGAACCTGACACACCCCGATATATCCAAAAGACGAACA
CTGTCAACGTTGTGTTTAAACGATAAATGTATCAACCCCTGTCACCTAGA
AATCGTACCCAGATCACTAGATGATGTGTGGGAGAGAATATTGAAACATA
CTCGTCGTGAAAATGACTGCTTATTGTGGACAGGGTGTACGAATAAAGGG
TACGGTCAAACTACTGTATATAGTAAGACTATGTCTGCCCACAGAGCATC
ATACCTGATCAAAACAAAGGGTGAGCCGATCCCGTGTGAGATCGATGGGA
TGACTGCACAGGTACGACGCATGTGTGGCAAATCGCTTTGTATCAACCCG
GATCACCTCGATATTGGAAGCATTGTTTCTAATCCCCAAGATAAGGCTGC
ACATGGAACGAGTATGGTCGGTGAGCGCTGTCACTTAGCAAAAATTTCAG
AAGAGAAAGCAGCTCAAATCAAGATATCGAAA
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