mRNA_P-littoralis_Contig708.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig708.4.1
Unique NamemRNA_P-littoralis_Contig708.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig708.4.1 vs. uniprot
Match: A0A6H5JSZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ3_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 1.510e-66
Identity = 112/175 (64.00%), Postives = 137/175 (78.29%), Query Frame = 2
Query:  239 EKDELTLGMFSTLNDETEFRQEVERYAASARGKAEVVNDDNDKDNPSPRASSFPLLWTFPLLYEWSCHLFFFAPIHQQLVESVFSKYDTCTKPCDSREIDIVRLGQFSSAQSRKIQRAHASNSEIRQAGAKAIKVARELSKAASTAVPCERRLRKRSHDVTTFLKGVNDEARFGS 763
            EKDELT GMFS LN   EFR EVERYA SAR K E+V DD D +N +PR S F ++W+FPLLYEW+CH   FAPIHQQLVES FS +DTCT+  DSREIDIVRLGQF S+ SR++QR +A+N EIRQAG KAI VAREL K+A+ A+P ER+LRKR+HD   FL+  +++++ GS
Sbjct:   90 EKDELTFGMFSKLNASAEFRGEVERYALSAREKKEIVVDD-DAENQAPRVSGFDMIWSFPLLYEWACHAILFAPIHQQLVESDFSTFDTCTQKHDSREIDIVRLGQFRSSHSRRVQRLYATNKEIRQAGDKAIAVARELKKSAAHAIPNERQLRKRTHDTKQFLRDQSEKSKHGS 263          
BLAST of mRNA_P-littoralis_Contig708.4.1 vs. uniprot
Match: D7FXZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ1_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 2.090e-66
Identity = 113/174 (64.94%), Postives = 136/174 (78.16%), Query Frame = 2
Query:  239 EKDELTLGMFSTLNDETEFRQEVERYAASARGKAEVVNDDNDKDNPSPRASSFPLLWTFPLLYEWSCHLFFFAPIHQQLVESVFSKYDTCTKPCDSREIDIVRLGQFSSAQSRKIQRAHASNSEIRQAGAKAIKVARELSKAASTAVPCERRLRKRSHDVTTFLKGVNDEARFG 760
            EKD+LT GM++ LN+  EFR+EVE YAASA  K EVV+DD D DNP PR S+F ++W FPLLYEW+ H  F A IH+QLV SVFSKYDTCT+  DSREIDIVRLGQF SAQSR+I++ HASN EIR+AG KAI  AR L KAAS AVP ER+ RKR HDVT F++   ++A++G
Sbjct:   83 EKDKLTFGMYTELNESAEFRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFPLLYEWARHAIFLAVIHEQLVGSVFSKYDTCTQQHDSREIDIVRLGQFRSAQSRRIRKLHASNHEIREAGNKAIAEARALRKAASEAVPNERQQRKRGHDVTQFVRTATNKAKYG 256          
BLAST of mRNA_P-littoralis_Contig708.4.1 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 7.660e-55
Identity = 105/175 (60.00%), Postives = 132/175 (75.43%), Query Frame = 2
Query:  239 EKDELTLGMFSTLNDETEFRQEVERYAASARGKAEVVNDDNDKDNPSPRASSFPLLWTFPLLYEWSCHLFFFAPIHQQLVESVFSKYDTCTKPCDSREIDIVRLGQFSSAQSRKIQRAHASNSEIRQAGAKAIKVARELSKAASTAVPCERRLRKRSHDVTTFLKGVNDEARFGS 763
            EKDELT GMFS LN   EFR EVERY+ SAR K E+V DD D ++ +PR S F ++W+FPLLYEW+ H   FAPIHQQLV+SV S YDTCT+  DSREI IVRLGQF S+QSR++QR HA+N EIR+AG K I VAREL K+A+ A+P + +LRKR  D   FL+  +++++ GS
Sbjct:  586 EKDELTFGMFSKLNASAEFRGEVERYSLSAREKKEIVVDD-DAESQAPRVSGFDMIWSFPLLYEWARHAILFAPIHQQLVKSVCSTYDTCTQKHDSREIGIVRLGQFRSSQSRRVQRLHATNKEIREAGDKVIAVARELKKSAAQAIPNDWQLRKRVLDTKQFLRDQSEKSKHGS 759          
BLAST of mRNA_P-littoralis_Contig708.4.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 7.170e-53
Identity = 102/174 (58.62%), Postives = 127/174 (72.99%), Query Frame = 2
Query:  245 DELTLGMFSTLNDETEFRQEVERYAASARGKAEVVNDDNDKDNPSPRASSFPLLWTFPLLYEWSCHLFFFAPIHQQLVESVFSKYDTCTKPCDSREIDIVRLGQFSSAQSRKIQRAHASNSEIRQAGAKAIKVARELSKAASTAVPCERRLRKRSHDVTTFLKGVNDEARFGSE 766
            ++LTLGMFS L    EFR+E+ERYAASA  K +VV+D  D +N +PR S F ++WTFP LYEW+CH  FFAPIHQQLVES  S YDT T+  DSRE+DIVRLGQFSS  SR+++R  +SN EIR  G KAI VA  L K+AS AVP ER+LR   HD   FLK  +++++ GS+
Sbjct:  223 NKLTLGMFSKLAASAEFREELERYAASAHEKKKVVSD-VDVENQTPRVSGFDMIWTFPQLYEWACHAVFFAPIHQQLVESSSSTYDTGTQKHDSRELDIVRLGQFSSRGSRRVERLDSSNQEIRDEGDKAIAVATVLKKSASHAVPNERQLRNGEHDWRKFLKDKSEKSKHGSK 395          
BLAST of mRNA_P-littoralis_Contig708.4.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 6.850e-27
Identity = 70/158 (44.30%), Postives = 96/158 (60.76%), Query Frame = 2
Query:  236 REKDELTLGMFSTLNDETEFRQEVERYAASARGKAEVVNDDNDKDNPSPRASS-FPLLWTFPLLYEWSCHLFFFAPIHQQLVESVFSKYDTCTKPCDSREIDIVRLGQFSSAQSRKIQRAHASNSEIRQAGAKAIKVARELSKAASTAVPCERRLRKR 706
            R KDELT G+FS ++ +   R E+E+YA S  G  EV       D  +P+ +S    L+ FPLLY+  CH F+F PIHQQL+E+ FSK+D+C +  D  E+DIVR+G + SA+SR I  A A+  +IR AG K ++ ARE    +    P E   RKR
Sbjct:  312 RRKDELTFGLFSRIDSDRSVRNELEQYANSGWGDKEV-------DQGAPKGTSALARLFDFPLLYKLVCHRFYFVPIHQQLIEAFFSKFDSCAQKTDMAEMDIVRVGGWKSAESRDIVCADATGEKIRAAGKKVLEKAREAKAVSHARKPAENLSRKR 462          
BLAST of mRNA_P-littoralis_Contig708.4.1 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 6.240e-25
Identity = 64/140 (45.71%), Postives = 87/140 (62.14%), Query Frame = 2
Query:  236 REKDELTLGMFSTLNDETEFRQEVERYAASARGKAEVVNDDNDKDNPSPRASS-FPLLWTFPLLYEWSCHLFFFAPIHQQLVESVFSKYDTCTKPCDSREIDIVRLGQFSSAQSRKIQRAHASNSEIRQAGAKAIKVARE 652
            R KDELTLG+FS ++ +   R E+E+YA S  G  E+       D  +P+ +S    L+  PLLY   CH F+F PIHQQL+E+ FSKYD+C K  D  E+D+VR+G + SA+SR I    A + +IR AG K +K A E
Sbjct:  313 RRKDELTLGLFSCIDGDLSVRSELEQYANSGWGDKEI-------DESAPKGTSALARLFDLPLLYRLVCHRFYFVPIHQQLIEAFFSKYDSCAKKTDMAEMDVVRVGGWKSAESRDIVCVDAIDDQIRGAGKKVLKEATE 445          
BLAST of mRNA_P-littoralis_Contig708.4.1 vs. uniprot
Match: A0A6H5KR45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR45_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 8.310e-18
Identity = 49/108 (45.37%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  236 REKDELTLGMFSTLNDETEFRQEVERYAASARGKAEVVNDDNDKDNPSPRASSFPLLWTFPLLYEWSCHLFFFAPIHQQLVESVFSKYDTCTKPCDSREIDIVRLGQF 559
            R KDELT G+FS + ++ E R EVE YA S  G  EV     D++      +   L   FP LY++ C  F+F PIHQQL+E+ FSKYDTC K  D   +D VR+G +
Sbjct:  263 RRKDELTFGLFSIVEEDAEMRCEVEGYAESGFGDKEV-----DEEAEKGTTALVRLFEKFPRLYKFVCVRFYFVPIHQQLIEAFFSKYDTCAKKTDVAVMDSVRVGSW 365          
BLAST of mRNA_P-littoralis_Contig708.4.1 vs. uniprot
Match: A0A6H5JMW8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW8_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 8.840e-10
Identity = 36/72 (50.00%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    4 RHQHLPLSMARLGCSSFYEGKWAGSEKAFEHAVGQEFARALLVVLWPDAYQNVEWVRWDEEHDFREILANDL 219
            RHQ LPLSMAR+GC SFY         A E AVG EFARA L V WP  Y+     R + E ++R  L  DL
Sbjct:  162 RHQELPLSMARIGCPSFYARTGIMGGGAVEQAVGPEFARAFLHVAWPGLYEGEP--RTEREREYRTQLVKDL 231          
BLAST of mRNA_P-littoralis_Contig708.4.1 vs. uniprot
Match: A0A6H5JQF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF6_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.510e-9
Identity = 35/69 (50.72%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    1 DRHQHLPLSMARLGCSSFYEGKWAGSEKAFEHAVGQEFARALLVVLWPDAYQNVEWVRWDEEHDFREIL 207
            +RHQ LPLSMAR+GC SFY      +E A E AVG +FARA L V WP  Y      R + E +FR  L
Sbjct:  149 ERHQQLPLSMARIGCPSFYARTGIMAEGAVEQAVGPKFARAFLHVAWPGLYDGEP--RTEREREFRTQL 215          
BLAST of mRNA_P-littoralis_Contig708.4.1 vs. uniprot
Match: A0A6H5L8G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G1_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 4.850e-5
Identity = 27/52 (51.92%), Postives = 32/52 (61.54%), Query Frame = 1
Query:    1 DRHQHLPLSMARLGCSSFYEGKWAGSEKAFEHAVGQEFARALLVVLWPDAYQ 156
            +RHQ LPLSMAR+ C SFY      ++ A E   G EFARA L V WP  Y+
Sbjct:  195 ERHQQLPLSMARIACPSFYARTGIMADGAVE---GPEFARAFLHVAWPGLYE 243          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig708.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JSZ3_9PHAE1.510e-6664.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXZ1_ECTSI2.090e-6664.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU73_9PHAE7.660e-5560.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN38_9PHAE7.170e-5358.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIQ1_ECTSI6.850e-2744.30Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5JI13_9PHAE6.240e-2545.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR45_9PHAE8.310e-1845.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMW8_9PHAE8.840e-1050.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQF6_9PHAE2.510e-950.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8G1_9PHAE4.850e-551.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig708contigP-littoralis_Contig708:21474..22242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size769
Hectar predicted targeting categoryother localisation
Exons1
Cds size591
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791476.829364-UTR-P-littoralis_Contig708:21473..216511680791476.829364-UTR-P-littoralis_Contig708:21473..21651Pylaiella littoralis U1_48UTRP-littoralis_Contig708 21474..21651 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791476.8423033-CDS-P-littoralis_Contig708:21651..222421680791476.8423033-CDS-P-littoralis_Contig708:21651..22242Pylaiella littoralis U1_48CDSP-littoralis_Contig708 21652..22242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig708.4.1prot_P-littoralis_Contig708.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig708 21652..22242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig708.4.1

>prot_P-littoralis_Contig708.4.1 ID=prot_P-littoralis_Contig708.4.1|Name=mRNA_P-littoralis_Contig708.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=197bp
MKNMISVKSLQTTLQRHQRREKDELTLGMFSTLNDETEFRQEVERYAASA
RGKAEVVNDDNDKDNPSPRASSFPLLWTFPLLYEWSCHLFFFAPIHQQLV
ESVFSKYDTCTKPCDSREIDIVRLGQFSSAQSRKIQRAHASNSEIRQAGA
KAIKVARELSKAASTAVPCERRLRKRSHDVTTFLKGVNDEARFGSE*
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mRNA from alignment at P-littoralis_Contig708:21474..22242+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig708.4.1 ID=mRNA_P-littoralis_Contig708.4.1|Name=mRNA_P-littoralis_Contig708.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=769bp|location=Sequence derived from alignment at P-littoralis_Contig708:21474..22242+ (Pylaiella littoralis U1_48)
GACAGGCACCAGCACCTTCCCCTCAGCATGGCGCGCCTGGGGTGTAGTTC TTTTTACGAAGGAAAGTGGGCTGGGTCGGAGAAGGCTTTTGAGCATGCTG TAGGGCAGGAGTTTGCGCGGGCTTTACTGGTGGTCCTTTGGCCTGACGCA TACCAGAACGTGGAGTGGGTGAGATGGGATGAAGAACATGATTTCCGTGA AATCCTTGCAAACGACCTTGCAACGGCACCAACGCAGAGAGAAGGATGAG CTCACTCTAGGCATGTTTTCAACGTTGAACGATGAGACAGAGTTCAGACA AGAAGTCGAGCGGTATGCCGCATCCGCGCGAGGCAAGGCAGAGGTTGTGA ACGATGATAACGATAAGGATAATCCATCACCTCGTGCTTCAAGCTTTCCT TTGCTGTGGACTTTTCCTTTGCTCTACGAATGGTCATGCCACCTGTTTTT TTTTGCGCCGATTCACCAGCAACTTGTCGAGAGCGTGTTTTCCAAGTATG ATACGTGCACAAAGCCGTGCGATTCGAGAGAGATTGACATCGTTCGCCTG GGTCAGTTCTCATCAGCTCAGTCAAGAAAGATACAGAGGGCTCACGCCTC CAACTCCGAAATCCGGCAAGCAGGAGCCAAGGCAATCAAGGTTGCTCGAG AGTTGAGTAAAGCTGCTTCTACCGCAGTTCCGTGCGAGCGACGGCTTCGC AAACGATCACACGACGTCACCACATTCTTGAAAGGCGTCAATGACGAGGC TAGGTTTGGGTCGGAATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig708:21474..22242+

>mRNA_P-littoralis_Contig708.4.1 ID=mRNA_P-littoralis_Contig708.4.1|Name=mRNA_P-littoralis_Contig708.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=591bp|location=Sequence derived from alignment at P-littoralis_Contig708:21474..22242+ (Pylaiella littoralis U1_48)
ATGAAGAACATGATTTCCGTGAAATCCTTGCAAACGACCTTGCAACGGCA
CCAACGCAGAGAGAAGGATGAGCTCACTCTAGGCATGTTTTCAACGTTGA
ACGATGAGACAGAGTTCAGACAAGAAGTCGAGCGGTATGCCGCATCCGCG
CGAGGCAAGGCAGAGGTTGTGAACGATGATAACGATAAGGATAATCCATC
ACCTCGTGCTTCAAGCTTTCCTTTGCTGTGGACTTTTCCTTTGCTCTACG
AATGGTCATGCCACCTGTTTTTTTTTGCGCCGATTCACCAGCAACTTGTC
GAGAGCGTGTTTTCCAAGTATGATACGTGCACAAAGCCGTGCGATTCGAG
AGAGATTGACATCGTTCGCCTGGGTCAGTTCTCATCAGCTCAGTCAAGAA
AGATACAGAGGGCTCACGCCTCCAACTCCGAAATCCGGCAAGCAGGAGCC
AAGGCAATCAAGGTTGCTCGAGAGTTGAGTAAAGCTGCTTCTACCGCAGT
TCCGTGCGAGCGACGGCTTCGCAAACGATCACACGACGTCACCACATTCT
TGAAAGGCGTCAATGACGAGGCTAGGTTTGGGTCGGAATGA
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