mRNA_P-littoralis_Contig706.48.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig706.48.1 vs. uniprot
Match: D8LHR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHR2_ECTSI) HSP 1 Score: 141 bits (356), Expect = 1.370e-37 Identity = 74/145 (51.03%), Postives = 93/145 (64.14%), Query Frame = 1
Query: 1 HEGEGP---QPYWAWEPSACKLEEVDAAKFCRVMKGRKGLLFVGDSLSHLMTRTLASILGANFVSNPQSNLN-FSACGGALKISWYRNDVLDVSGTTKWNSDYCNT--FKTLCCVVFAKDSVLERFDTVVVNAGVHPMAGGVSEY 417
HEGE P PYW WEPSAC+LEEVD AKFCRVMKGRKGLLF GDSL+ M TL ++L A V + ++ ++AC G L +SWYRND LD +++ C C+VFA D+ L ++DT++VNAG H GGV Y
Sbjct: 158 HEGEEPVPPMPYWKWEPSACRLEEVDEAKFCRVMKGRKGLLFAGDSLTGEMIDTLRAVLRATRVKHVHLKMDTYTACDGELTLSWYRNDFLDTR-LDGFDTPRCEEPDISISQCMVFADDATLSQYDTLLVNAGAHRQLGGVEAY 301
BLAST of mRNA_P-littoralis_Contig706.48.1 vs. uniprot
Match: A0A6H5J7J3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J3_9PHAE) HSP 1 Score: 139 bits (350), Expect = 1.420e-36 Identity = 75/148 (50.68%), Postives = 97/148 (65.54%), Query Frame = 1
Query: 1 HEGEGP---QPYWAWEPSACKLEEVDAAKFCRVMKGRKGLLFVGDSLSHLMTRTLASILGANFVSN-PQSNLNFSACGGALKISWYRNDVLDVSGTTKWNSDYCNTFKTLC--CVVFA---KDSVLERFDTVVVNAGVHPMAGGVSEY 417
H+G GP PYW WEPSAC+LEEVD AKFCRVM+GRKGLLF GDSL+ M TLA++L A V + P + ++AC G L +SWYRND LD T +++ +C C+VFA D+ L +FDT+VVN+G H +GG+ Y
Sbjct: 173 HDGVGPVPPMPYWKWEPSACRLEEVDEAKFCRVMEGRKGLLFAGDSLTGEMIDTLAAVLRATLVKHVPLTMDTYTACDGELTLSWYRNDFLDTR-TDGFDTVHCEDPDASMSHCMVFAGMYHDATLTQFDTLVVNSGAHLRSGGLEAY 319
BLAST of mRNA_P-littoralis_Contig706.48.1 vs. uniprot
Match: A0A6H5J9Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Y7_9PHAE) HSP 1 Score: 134 bits (338), Expect = 5.970e-36 Identity = 70/143 (48.95%), Postives = 89/143 (62.24%), Query Frame = 1
Query: 1 HEGEGP---QPYWAWEPSACKLEEVDAAKFCRVMKGRKGLLFVGDSLSHLMTRTLASILGANFVSNPQSNLN-FSACGGALKISWYRNDVLDVSGTTKWNSDYCNTFKTLCCVVFAKDSVLERFDTVVVNAGVHPMAGGVSEY 417
HEGE P PYW WEPSAC+LEEVD AKFCRVMKGRKGLLF GDSL+ M TL ++L A V + + ++ ++AC G L +SWYRND LD +++ C D+ L ++DT++VNAG H GGV Y
Sbjct: 37 HEGEEPVPPMPYWKWEPSACRLEEVDEAKFCRVMKGRKGLLFAGDSLTGEMIDTLRAVLRATRVKHVKLKMDTYTACDGELTLSWYRNDYLDTR-LDGFDTPRCEEPDISISQCMTYDATLSQYDTLLVNAGAHRQLGGVEAY 178
BLAST of mRNA_P-littoralis_Contig706.48.1 vs. uniprot
Match: A0A6H5JU41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU41_9PHAE) HSP 1 Score: 115 bits (289), Expect = 5.660e-28 Identity = 76/195 (38.97%), Postives = 94/195 (48.21%), Query Frame = 1
Query: 1 HEGEG---PQPYWAWEPSACKLEEVDAAKFCRVMKGRKGLLFVGDS-------------------------LSHLMTRTLASILGANFVSN-PQSNLNFSACGGALKISWYRNDVLDVSGTTKWNSDYCNT--FKTLCCVVFA-------------------------KDSVLERFDTVVVNAGVHPMAGGVSEY 417
H+G+G P PYW WEPSAC+LEEVD FC VM+GRKGLLFVG+ L+ M TLA IL A V P + +SAC GAL +SWYRND LD T +++ +C CVVFA D+ L +FDT+VVNAG H +GG+ Y
Sbjct: 84 HQGQGHAPPMPYWKWEPSACRLEEVDQISFCGVMEGRKGLLFVGEGRVVRRPKKDGLAVGRKNPASSTRQLLTGEMIDTLAVILRATRVEYVPMTGKTYSACDGALTLSWYRNDYLDTR-TDGFDTVHCEDPDLSASRCVVFAGMASIKMEMVRAATMQCQPALMFIADDATLIQFDTLVVNAGAHRRSGGLEAY 277
BLAST of mRNA_P-littoralis_Contig706.48.1 vs. uniprot
Match: D7G218_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G218_ECTSI) HSP 1 Score: 74.3 bits (181), Expect = 1.940e-13 Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 1
Query: 1 HEGEGP---QPYWAWEPSACKLEEVDAAKFCRVMKGRKGLLFVGDS 129
HEGE P PYW WEPSAC+LEE D AKFCRVM+GRKGLLF D+
Sbjct: 32 HEGEEPVPPMPYWKWEPSACRLEEADKAKFCRVMEGRKGLLFADDA 77
BLAST of mRNA_P-littoralis_Contig706.48.1 vs. uniprot
Match: A0A0M0JXX3_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JXX3_9EUKA) HSP 1 Score: 62.0 bits (149), Expect = 1.010e-8 Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = 1
Query: 7 GEGPQPYWAWEPSACKLEEVDAAKFCRVMKGRKGLLFVGDSLSHLMTRTLASILGANFVSNPQ-----SNLNFSACGGALKISWYRNDVL 261
G GP+P + WE AC+L D A C V++G++ ++ GDS + + +L LG F N + S+L+ SAC GA ++ + RND+L
Sbjct: 5 GLGPRPLYEWEADACELPRFDVAHACAVLEGKQ-VVVAGDSTAGQLFLSLVMQLGGRFGRNSRHTSAISDLSASACSGATRLVFVRNDLL 93
BLAST of mRNA_P-littoralis_Contig706.48.1 vs. uniprot
Match: A0A7S0JJ27_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JJ27_9EUKA) HSP 1 Score: 58.2 bits (139), Expect = 3.200e-7 Identity = 29/83 (34.94%), Postives = 46/83 (55.42%), Query Frame = 1
Query: 28 WAWEPSACKLEEVDAAKFCRVMKGRKGLLFVGDSLSHLMTRTLASILGANFVSNPQSNLNFSACGGALKISWYRNDVLDVSGT 276
W W L D C ++G +L VGDS+SH+ +TLA++ G + + S +S CGG ++++ RNDVLDV+ +
Sbjct: 44 WQWR--CPPLPVPDPRALCLRLRGN--ILIVGDSVSHVFAQTLAALQGGQRLQDTPSRAEWSVCGGRRRLTYVRNDVLDVAAS 122 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig706.48.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig706.48.1 >prot_P-littoralis_Contig706.48.1 ID=prot_P-littoralis_Contig706.48.1|Name=mRNA_P-littoralis_Contig706.48.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=139bp HEGEGPQPYWAWEPSACKLEEVDAAKFCRVMKGRKGLLFVGDSLSHLMTRback to top mRNA from alignment at P-littoralis_Contig706:123805..124890+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig706.48.1 ID=mRNA_P-littoralis_Contig706.48.1|Name=mRNA_P-littoralis_Contig706.48.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1086bp|location=Sequence derived from alignment at P-littoralis_Contig706:123805..124890+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig706:123805..124890+ >mRNA_P-littoralis_Contig706.48.1 ID=mRNA_P-littoralis_Contig706.48.1|Name=mRNA_P-littoralis_Contig706.48.1|organism=Pylaiella littoralis U1_48|type=CDS|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig706:123805..124890+ (Pylaiella littoralis U1_48)back to top |