mRNA_P-littoralis_Contig706.48.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig706.48.1
Unique NamemRNA_P-littoralis_Contig706.48.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig706.48.1 vs. uniprot
Match: D8LHR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHR2_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 1.370e-37
Identity = 74/145 (51.03%), Postives = 93/145 (64.14%), Query Frame = 1
Query:    1 HEGEGP---QPYWAWEPSACKLEEVDAAKFCRVMKGRKGLLFVGDSLSHLMTRTLASILGANFVSNPQSNLN-FSACGGALKISWYRNDVLDVSGTTKWNSDYCNT--FKTLCCVVFAKDSVLERFDTVVVNAGVHPMAGGVSEY 417
            HEGE P    PYW WEPSAC+LEEVD AKFCRVMKGRKGLLF GDSL+  M  TL ++L A  V +    ++ ++AC G L +SWYRND LD      +++  C         C+VFA D+ L ++DT++VNAG H   GGV  Y
Sbjct:  158 HEGEEPVPPMPYWKWEPSACRLEEVDEAKFCRVMKGRKGLLFAGDSLTGEMIDTLRAVLRATRVKHVHLKMDTYTACDGELTLSWYRNDFLDTR-LDGFDTPRCEEPDISISQCMVFADDATLSQYDTLLVNAGAHRQLGGVEAY 301          
BLAST of mRNA_P-littoralis_Contig706.48.1 vs. uniprot
Match: A0A6H5J7J3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J3_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.420e-36
Identity = 75/148 (50.68%), Postives = 97/148 (65.54%), Query Frame = 1
Query:    1 HEGEGP---QPYWAWEPSACKLEEVDAAKFCRVMKGRKGLLFVGDSLSHLMTRTLASILGANFVSN-PQSNLNFSACGGALKISWYRNDVLDVSGTTKWNSDYCNTFKTLC--CVVFA---KDSVLERFDTVVVNAGVHPMAGGVSEY 417
            H+G GP    PYW WEPSAC+LEEVD AKFCRVM+GRKGLLF GDSL+  M  TLA++L A  V + P +   ++AC G L +SWYRND LD   T  +++ +C         C+VFA    D+ L +FDT+VVN+G H  +GG+  Y
Sbjct:  173 HDGVGPVPPMPYWKWEPSACRLEEVDEAKFCRVMEGRKGLLFAGDSLTGEMIDTLAAVLRATLVKHVPLTMDTYTACDGELTLSWYRNDFLDTR-TDGFDTVHCEDPDASMSHCMVFAGMYHDATLTQFDTLVVNSGAHLRSGGLEAY 319          
BLAST of mRNA_P-littoralis_Contig706.48.1 vs. uniprot
Match: A0A6H5J9Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Y7_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 5.970e-36
Identity = 70/143 (48.95%), Postives = 89/143 (62.24%), Query Frame = 1
Query:    1 HEGEGP---QPYWAWEPSACKLEEVDAAKFCRVMKGRKGLLFVGDSLSHLMTRTLASILGANFVSNPQSNLN-FSACGGALKISWYRNDVLDVSGTTKWNSDYCNTFKTLCCVVFAKDSVLERFDTVVVNAGVHPMAGGVSEY 417
            HEGE P    PYW WEPSAC+LEEVD AKFCRVMKGRKGLLF GDSL+  M  TL ++L A  V + +  ++ ++AC G L +SWYRND LD      +++  C             D+ L ++DT++VNAG H   GGV  Y
Sbjct:   37 HEGEEPVPPMPYWKWEPSACRLEEVDEAKFCRVMKGRKGLLFAGDSLTGEMIDTLRAVLRATRVKHVKLKMDTYTACDGELTLSWYRNDYLDTR-LDGFDTPRCEEPDISISQCMTYDATLSQYDTLLVNAGAHRQLGGVEAY 178          
BLAST of mRNA_P-littoralis_Contig706.48.1 vs. uniprot
Match: A0A6H5JU41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU41_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 5.660e-28
Identity = 76/195 (38.97%), Postives = 94/195 (48.21%), Query Frame = 1
Query:    1 HEGEG---PQPYWAWEPSACKLEEVDAAKFCRVMKGRKGLLFVGDS-------------------------LSHLMTRTLASILGANFVSN-PQSNLNFSACGGALKISWYRNDVLDVSGTTKWNSDYCNT--FKTLCCVVFA-------------------------KDSVLERFDTVVVNAGVHPMAGGVSEY 417
            H+G+G   P PYW WEPSAC+LEEVD   FC VM+GRKGLLFVG+                          L+  M  TLA IL A  V   P +   +SAC GAL +SWYRND LD   T  +++ +C         CVVFA                          D+ L +FDT+VVNAG H  +GG+  Y
Sbjct:   84 HQGQGHAPPMPYWKWEPSACRLEEVDQISFCGVMEGRKGLLFVGEGRVVRRPKKDGLAVGRKNPASSTRQLLTGEMIDTLAVILRATRVEYVPMTGKTYSACDGALTLSWYRNDYLDTR-TDGFDTVHCEDPDLSASRCVVFAGMASIKMEMVRAATMQCQPALMFIADDATLIQFDTLVVNAGAHRRSGGLEAY 277          
BLAST of mRNA_P-littoralis_Contig706.48.1 vs. uniprot
Match: D7G218_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G218_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.940e-13
Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 1
Query:    1 HEGEGP---QPYWAWEPSACKLEEVDAAKFCRVMKGRKGLLFVGDS 129
            HEGE P    PYW WEPSAC+LEE D AKFCRVM+GRKGLLF  D+
Sbjct:   32 HEGEEPVPPMPYWKWEPSACRLEEADKAKFCRVMEGRKGLLFADDA 77          
BLAST of mRNA_P-littoralis_Contig706.48.1 vs. uniprot
Match: A0A0M0JXX3_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JXX3_9EUKA)

HSP 1 Score: 62.0 bits (149), Expect = 1.010e-8
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = 1
Query:    7 GEGPQPYWAWEPSACKLEEVDAAKFCRVMKGRKGLLFVGDSLSHLMTRTLASILGANFVSNPQ-----SNLNFSACGGALKISWYRNDVL 261
            G GP+P + WE  AC+L   D A  C V++G++ ++  GDS +  +  +L   LG  F  N +     S+L+ SAC GA ++ + RND+L
Sbjct:    5 GLGPRPLYEWEADACELPRFDVAHACAVLEGKQ-VVVAGDSTAGQLFLSLVMQLGGRFGRNSRHTSAISDLSASACSGATRLVFVRNDLL 93          
BLAST of mRNA_P-littoralis_Contig706.48.1 vs. uniprot
Match: A0A7S0JJ27_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JJ27_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 3.200e-7
Identity = 29/83 (34.94%), Postives = 46/83 (55.42%), Query Frame = 1
Query:   28 WAWEPSACKLEEVDAAKFCRVMKGRKGLLFVGDSLSHLMTRTLASILGANFVSNPQSNLNFSACGGALKISWYRNDVLDVSGT 276
            W W      L   D    C  ++G   +L VGDS+SH+  +TLA++ G   + +  S   +S CGG  ++++ RNDVLDV+ +
Sbjct:   44 WQWR--CPPLPVPDPRALCLRLRGN--ILIVGDSVSHVFAQTLAALQGGQRLQDTPSRAEWSVCGGRRRLTYVRNDVLDVAAS 122          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig706.48.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LHR2_ECTSI1.370e-3751.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7J3_9PHAE1.420e-3650.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9Y7_9PHAE5.970e-3648.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU41_9PHAE5.660e-2838.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G218_ECTSI1.940e-1371.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0M0JXX3_9EUKA1.010e-836.67Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A7S0JJ27_9EUKA3.200e-734.94Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig706contigP-littoralis_Contig706:123805..124890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3827.XP_004488993.1
PFAMsPC-Esterase,PMR5N
Model size418
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.38e-05
EggNOG OGs28K4X@1|root,2RTPH@2759|Eukaryota,37PHE@33090|Viridiplantae,3GGZT@35493|Streptophyta,4JSBD@91835|fabids
DescriptionProtein trichome birefringence-like 42
Cds size417
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791475.0493865-CDS-P-littoralis_Contig706:123804..1239251680791475.0493865-CDS-P-littoralis_Contig706:123804..123925Pylaiella littoralis U1_48CDSP-littoralis_Contig706 123805..123925 +
1680791475.0611176-CDS-P-littoralis_Contig706:124594..1248901680791475.0611176-CDS-P-littoralis_Contig706:124594..124890Pylaiella littoralis U1_48CDSP-littoralis_Contig706 124595..124890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig706.48.1prot_P-littoralis_Contig706.48.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig706 123805..124890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig706.48.1

>prot_P-littoralis_Contig706.48.1 ID=prot_P-littoralis_Contig706.48.1|Name=mRNA_P-littoralis_Contig706.48.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=139bp
HEGEGPQPYWAWEPSACKLEEVDAAKFCRVMKGRKGLLFVGDSLSHLMTR
TLASILGANFVSNPQSNLNFSACGGALKISWYRNDVLDVSGTTKWNSDYC
NTFKTLCCVVFAKDSVLERFDTVVVNAGVHPMAGGVSEY
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mRNA from alignment at P-littoralis_Contig706:123805..124890+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig706.48.1 ID=mRNA_P-littoralis_Contig706.48.1|Name=mRNA_P-littoralis_Contig706.48.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1086bp|location=Sequence derived from alignment at P-littoralis_Contig706:123805..124890+ (Pylaiella littoralis U1_48)
CACGAAGGAGAAGGTCCTCAGCCGTACTGGGCGTGGGAGCCGTCAGCATG CAAGCTGGAAGAGGTGGACGCTGCCAAGTTTTGCCGTGTGATGAAAGGGA GGAAGGGACTGCTATTCGTGGGTGGGGCATATACACGTAGAAAACAGTTC AGAGCCAACTACAGAAAAATCACGGCCAATACTCAAGTTTGTTGGCCGGC ACGCATCGAGATCTGATCGTGCCACCCCTGCAGGGTATATTCAGTTTGGA GTATTTCCACCTTAGTTCGCAGTTCGTGGATCTTTAATTCCTGGCCAACA ATTTCTTACGAAAGGTGATTCACGGTGTGCACCCTTGCCACGATCTATAC ATTCTTCGTATGTACATAGATGTTTTTATACCCCAGTGAGATTATGGCAA AATACTCGACGAAGCTGTGGACGTTTGTGCAGGACACAGATGACCAGCAC AGCAGTTGCGTCCAGGGAATGTTATACAACGATCTTGGTCGCTCACATTG CAGCATTTTGAAGAGACACGGTAGTACTGAACTGCCGAACAAACGTTAGG GCGGTAAGGTAGACAACCACTTACAGCGTGGCTTTCGACAGATATTCTCT GCCGAGGGTCTGTCGTGTGAGCCGCACACGACACCCAGCACCCGCCTCAA CCTTGCAGAAAACCCTCGACGGCAGCATTCATGTAGAGGAGCGAGTCACG AGAGATCGGTCCCGAACTCAGGCTGCGCAAACCTTTCACCACGTCCGAAG CCTTCTCACGCCCTTCCCCGCCAACACTCTAGTATCGCAGGGGACAGCTT GAGTCATCTCATGACGAGGACCCTAGCCTCTATTCTTGGCGCGAATTTTG TGAGCAACCCCCAGTCCAACTTGAATTTCTCGGCCTGCGGCGGCGCGCTT AAGATTTCGTGGTACCGCAACGACGTGCTCGACGTGTCGGGTACGACGAA GTGGAACAGCGACTATTGCAACACCTTCAAGACACTTTGTTGCGTCGTCT TCGCGAAGGACTCGGTGCTCGAGCGCTTCGATACCGTGGTGGTGAACGCC GGGGTGCACCCGATGGCGGGTGGCGTGAGTGAGTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig706:123805..124890+

>mRNA_P-littoralis_Contig706.48.1 ID=mRNA_P-littoralis_Contig706.48.1|Name=mRNA_P-littoralis_Contig706.48.1|organism=Pylaiella littoralis U1_48|type=CDS|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig706:123805..124890+ (Pylaiella littoralis U1_48)
CACGAAGGAGAAGGTCCTCAGCCGTACTGGGCGTGGGAGCCGTCAGCATG
CAAGCTGGAAGAGGTGGACGCTGCCAAGTTTTGCCGTGTGATGAAAGGGA
GGAAGGGACTGCTATTCGTGGGGGACAGCTTGAGTCATCTCATGACGAGG
ACCCTAGCCTCTATTCTTGGCGCGAATTTTGTGAGCAACCCCCAGTCCAA
CTTGAATTTCTCGGCCTGCGGCGGCGCGCTTAAGATTTCGTGGTACCGCA
ACGACGTGCTCGACGTGTCGGGTACGACGAAGTGGAACAGCGACTATTGC
AACACCTTCAAGACACTTTGTTGCGTCGTCTTCGCGAAGGACTCGGTGCT
CGAGCGCTTCGATACCGTGGTGGTGAACGCCGGGGTGCACCCGATGGCGG
GTGGCGTGAGTGAGTAC
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