prot_P-littoralis_Contig702.10.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig702.10.2
Unique Nameprot_P-littoralis_Contig702.10.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length459
Homology
BLAST of mRNA_P-littoralis_Contig702.10.2 vs. uniprot
Match: A0A6H5JMH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH8_9PHAE)

HSP 1 Score: 537 bits (1384), Expect = 3.610e-187
Identity = 312/415 (75.18%), Postives = 334/415 (80.48%), Query Frame = 0
Query:   48 VSAFGSGGGLSQQLLS-RSSRRAGDGIDEGLLLQQLSPAVRRRQLSRTGEERGEALSAASRRGAFIVEGGH-NHAAASTTKDWRDLGVEEERELCEQIVENARVQALQVEMERKESRPITVHEWAVAAGHPSAHQLMDALQEGRKAQRTVVLCHQGLVRSVAYRYKQVSRSLSLDDLTQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASILRAIADKDRLVRVPVHAQDTAMRILATSHALQLESGSAKGTPPTDAQLSLALGMPEASVTLYRKSSLPQNVADLDNPALSCSPEGSRGGSVGRRGEGSMGGEQWPWEASQLAQANVVRRDMMRAMEACLSPTEVRALRLRFGLEGMGKEGVARGG--ALTFTEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLAYSDLI 458
            V AFG  G LSQQ  S RS R AG G             +RR ++  +  +     + A RR AF+VEGG  N   +S+T DWRDL  EEE  LCE IVEN R+Q LQVE+ERKESRP+TV EWAVAAGHPSAHQLM ALQEGRKAQRT+ LCHQGLVRSVAYRYKQVSR+LSLDDLTQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKAS+LRAIADKDRLVRVPVHAQD AMRILA SHALQLESG   G  PTDAQL++ALGMPEASV LYRKS LPQN+ADLDN ALS SP+G   G  G RG G +GGEQWPWEASQLAQA VVRRDMMRAM+ACLSPTE RALRLRFGL G  KEG A GG  ALTF EIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLAY+DLI
Sbjct:   40 VCAFGYVGVLSQQQSSSRSLRPAGGGRG----------GIRRPRVPSSPAQEKALFATARRRNAFVVEGGGANPVTSSSTADWRDLTKEEETALCELIVENRRIQDLQVELERKESRPVTVQEWAVAAGHPSAHQLMAALQEGRKAQRTLALCHQGLVRSVAYRYKQVSRNLSLDDLTQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDAAMRILAASHALQLESG---GDVPTDAQLAVALGMPEASVALYRKSLLPQNIADLDNSALSGSPQGRAAGG-GSRG-GRVGGEQWPWEASQLAQAYVVRRDMMRAMQACLSPTEERALRLRFGLGGAEKEGAAGGGGGALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLAYADLI 439          
BLAST of mRNA_P-littoralis_Contig702.10.2 vs. uniprot
Match: D7FPW8_ECTSI (RpoD n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPW8_ECTSI)

HSP 1 Score: 520 bits (1339), Expect = 3.110e-181
Identity = 285/350 (81.43%), Postives = 304/350 (86.86%), Query Frame = 0
Query:  115 GGHNHAAASTTKDWRDLGVEEERELCEQIVENARVQALQVEMERKESRPITVHEWAVAAGHPSAHQLMDALQEGRKAQRTVVLCHQGLVRSVAYRYKQVSRSLSLDDLTQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASILRAIADKDRLVRVPVHAQDTAMRILATSHALQLESGSAKGTPPTDAQLSLALGMPEASVTLYRKSSLPQNVADLDNPALSCSPEGSRGGSVGRRGEGSMGG----EQWPWEASQLAQANVVRRDMMRAMEACLSPTEVRALRLRFGLEGMGKEGVAR--GGALTFTEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLAYSDLI 458
            GG N   +S+T DWRDL  EEE  LCE I+EN R+Q LQVE+ERKESRP+TV EWAVAAGHPSAHQLM ALQEGRKAQRT+ LCHQGLVRSVAYRYKQVSR+LSLDDLTQEGNVGLL+AVEKFD TKGTRFSSYAVFRIKAS+LRAIADKDRLVRVPVHAQD AMRILA SHALQLESG   G  PTDAQL++ALGMPEASV LYRKS LPQN+ADLDNPAL  SP+G RGGS G  G GS+GG    EQWPWEASQLAQA+VVRRDMMRAM+ACLSPTE RALRLRFGL G  KEG     GGALTF EIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLL+Y+DLI
Sbjct:   37 GGANPVTSSSTTDWRDLTKEEETALCELIIENRRIQDLQVELERKESRPVTVQEWAVAAGHPSAHQLMAALQEGRKAQRTLALCHQGLVRSVAYRYKQVSRNLSLDDLTQEGNVGLLEAVEKFDSTKGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDAAMRILAASHALQLESG---GDVPTDAQLAVALGMPEASVALYRKSLLPQNIADLDNPALPSSPQG-RGGS-GAAGGGSLGGRVGGEQWPWEASQLAQAHVVRRDMMRAMQACLSPTEERALRLRFGLGGAEKEGAVADGGGALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLSYADLI 381          
BLAST of mRNA_P-littoralis_Contig702.10.2 vs. uniprot
Match: A0A835ZDU2_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDU2_9STRA)

HSP 1 Score: 202 bits (513), Expect = 2.340e-57
Identity = 128/327 (39.14%), Postives = 195/327 (59.63%), Query Frame = 0
Query:  130 DLGVEEERELCEQIVENARVQALQVEMERKESRPITVHEWAVAAGHPSAHQLMDALQEGRKAQRTVVLCHQGLVRSVAYRYKQVSRSLSLDDLTQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASILRAIADKDRLVRVPVHAQDTAMRILATSHALQLESGSAKGTPPTDAQLSLALGMPEASVTLYRKSSLPQNVADLDNPALSCSPEGSRGGSVGRRGEGSMGGEQWPWEASQLAQANVVRRDMMRAMEACLSPTEVRALRLRFGLEGMGKEGVARGGALTFTEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLAYSD 456
            +L  + E  L   I E++R+ A Q ++E    R   V EWA AAG+  +  ++ AL+EG+KAQ  +V   + +VR++A +Y  +++SL+LDDL QEGN+GLL A +KFDP KG RF +YA FR+KAS+LRAIA+KDR +R+PVH QD A ++ + +  LQ+  G     PPTDA+++  L M  + VT +R+         +D  A++ +       +V  R   +      P   S++ +      D+ R +E  L+P E+ AL+LRFGL+G         G LTF E+G +M+ SAEGIR++V R++ KL+   EA  LL  Y++
Sbjct:   46 ELDPDVENALYAAIREHSRIHAKQEQLECILGRSALVAEWASAAGYMDSMSMLAALREGQKAQTKLVKSQRAMVRAIAKKYAFITKSLTLDDLIQEGNLGLLSAADKFDPDKGARFGTYAAFRVKASVLRAIANKDRQIRIPVHIQDVAGKVRSATQRLQVTLG----RPPTDAEIAATLDMLPSEVTAHREM--------MDKEAVTVN-------AVSDRDVMAFAARATPQARSEMVE------DLKRVLELYLAPKEIEALQLRFGLDGQAA------GPLTFKEVGGSMQTSAEGIRRIVSRALDKLREG-EAWRLLSDYAE 340          
BLAST of mRNA_P-littoralis_Contig702.10.2 vs. uniprot
Match: Q39515_CYACA (Chloroplast RNA polymerase sigma subunit n=2 Tax=Cyanidiaceae TaxID=265316 RepID=Q39515_CYACA)

HSP 1 Score: 134 bits (336), Expect = 2.860e-30
Identity = 101/317 (31.86%), Postives = 163/317 (51.42%), Query Frame = 0
Query:  135 EERELCEQIVENARVQALQVEMERKESRPITVHEWAVAAGH-PSAHQLMDALQEGRKAQRTVVLCHQGLVRSVAYRYKQVSRSLSLDDLTQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASILRAIADKDRLVRVPVHAQDTAMRILATSHALQLESGSAKGTPPTDAQLSLALGMPEASVTLYRKSSLPQNVADLDNPALSCSPEGSRGGSVGRRGEGSMGGEQWPWEASQLAQANVVRRDMMRAMEACLSPTEVRALRLRFGLEGMGKEGVARGGALTFTEIGRTMELSAEGIRKMVFRSIAKLQASDEANGL 450
            EE EL +Q+     ++  Q     +  +  T  EWA   G+     +L + +++GRKA+  +V  +  LV S+A RY   +R ++L DL QEG++GL++ VEKFD  +G RFS+YA + I+ SI RAI+D  R +R+PVH  DT   I   + ALQ+E G     PP++ ++  ++G+  A   L  + S  +N+  L+ P  S       G  V   GE  +  E+    A +    + +R  + + +  CLS  E   +R+RFGL          G   T  E+G    ++ E IR++  +++ KL+   E N L
Sbjct:  295 EEIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQGCGYGDDVEKLREHIRDGRKAKERMVTANLRLVVSIAKRYS--NRGVALQDLIQEGSIGLIRGVEKFDAERGFRFSTYATWWIRQSITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVELG----RPPSEEEICESVGIDRAKYRLVMECS--RNIVSLETPLRS-------GDDVHFLGESLIAPEE---RAEENCSRDTLRESIEKVLH-CLSTREREVIRMRFGL--------TDGRPRTLEEVGSRFNVTRERIRQIESKALKKLRTPAENNFL 584          
BLAST of mRNA_P-littoralis_Contig702.10.2 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 129 bits (323), Expect = 6.690e-29
Identity = 94/284 (33.10%), Postives = 156/284 (54.93%), Query Frame = 0
Query:  162 RPITVHEWAVAAGHPSAHQLMDALQEGRKAQRTVVLCHQGLVRSVAYRYKQVSRSLSLDDLTQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASILRAIADKDRLVRVPVHAQDTAMRILATSHALQLESGSAKGTPPTDAQLSLALGMPEASVTLYRKSSLPQNVADLDNPALSCSPEGSRGGSVGRRGEGSMGG---EQWPWEASQLAQANVVRRDMMRAMEACLSPTEVRALRLRFGLEGMGKEGVARGGALTFTEIGRTMELSAEGIRKMVFRSIAKLQ 442
            RP T+ EWA + G     +L   L  G+ A++ ++  +  LV S+A RY++  R L+L DL QEG++GL++AVEKFDP KG +FS+Y+ + IK +ILRAIAD+ R +R+PVH  D    +L T      E   + G  PT+ +L+  + +P   +   ++ S P    D    A++      +  S G+ GE  +G    +  P   +Q+ +AN+++ D+ + +   LSP E   +R+RFGL+    +        T  EIG    ++ E +R++  R++ KL+
Sbjct:  204 RPPTLEEWASSVGM-QPDELRRKLLRGQSAKKAMISSNLRLVISIAKRYQK--RGLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRAIADQSRTIRLPVHIHD----LLNTMKKQTRELHVSLGRNPTNEELAERMNLPIEKLRFLQECSRPAVSMDAQRRAMT-----KKSSSAGKGGEVQLGDSIKDDGPCP-TQVTEANMLKEDIEKLV-CTLSPREQDVIRMRFGLDADKPK--------TLEEIGNVFSVTRERVRQIEARALHKLR 465          
BLAST of mRNA_P-littoralis_Contig702.10.2 vs. uniprot
Match: A0A835ZES3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES3_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.170e-28
Identity = 104/295 (35.25%), Postives = 161/295 (54.58%), Query Frame = 0
Query:  152 LQVEMERKESRPITVHEWAVAAGHPSAHQLMDALQEGRKAQRTVVLCHQGLVRSVAYRYKQVSRSLSLDDLTQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASILRAIADKDRLVRVPVHAQDTAMRILATSHALQLESGSAKGTPPTDAQLSLALGMPEASVTLYRKSSLPQNVADLDNPALSCSPEGSR---GGSVGRRGEGSMGG-EQWPWEASQLAQANVVRRDMMRAMEACLSPTEVRALRLRFGLEGMGKEGVARGGALTFTEIGRTMELSAEGIRKMVFRSIAKLQ 442
            L V +ER+ SR     EWA   G       +  ++  R A+ T++  +  L  S+A RYK   R L+L DL QEG+ GL++A E+FDP KG +FS+YA + IK SI+RAIAD+ R +R+PVH  D    I   +  L LE G      PTD +LSL L +P   +  YR+++  ++V  ++  +L+ + +GS    GG      E S+   E  P + +Q +    + ++ M  +   LSP E   +RLRFGL+    +G AR    T  EIG+   ++ E +R++  R++ KL+
Sbjct:   96 LAVRLERQPSRA----EWAAHMGVDEDTLKLIMIRSSR-AKTTMISANLRLAVSIAKRYKH--RGLALSDLVQEGSFGLMKAAERFDPDKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDLLNSIKRATRELSLELG----RTPTDEELSLRLQVPTQKIEFYREAA--RSVLSMEQ-SLNNARKGSAASLGGKSDMTLEDSLRDPEPLPEDRTQQS----MLKENMSQLLGTLSPREQEVVRLRFGLD----DGRAR----TLEEIGQVFCVTRERVRQIESRALQKLR 364          
BLAST of mRNA_P-littoralis_Contig702.10.2 vs. uniprot
Match: A0A835ZBY3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY3_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.370e-28
Identity = 104/316 (32.91%), Postives = 169/316 (53.48%), Query Frame = 0
Query:  131 LGVEEERELCEQIVENARVQALQVEMERKESRPITVHEWAVAAGHPSAHQLMDALQEGRKAQRTVVLCHQGLVRSVAYRYKQVSRSLSLDDLTQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASILRAIADKDRLVRVPVHAQDTAMRILATSHALQLESGSAKGTPPTDAQLSLALGMPEASVTLYRKSSLPQNVADLDNPALSCSPEGS---RGGSVGRRGEGSMGG-EQWPWEASQLAQANVVRRDMMRAMEACLSPTEVRALRLRFGLEGMGKEGVARGGALTFTEIGRTMELSAEGIRKMVFRSIAKLQ 442
            L  EEE  L  QI      +A + E+  +  R  ++ EWA   G       +  ++  R A+ T++  +  L  S+A RY++  R L+L DL QEG+ GL++A E+FDP KG +FS+YA + IK SI+RAIAD+ R +R+PVH  D    +   +  L LE G      PTD +L++ L +    +  YR ++  Q+V  ++      S +GS   +GG      E S+   E  P + +Q A   +++ ++++ +   LSP E   +RLRFGL+    +G AR    T  EIG+   ++ E +R++  R++ KL+
Sbjct:   30 LKPEEEIALARQIKLGIEWEAAREELAMRLERTPSLGEWAAHMGVDEDTLKLIMIRSAR-AKSTMISANLRLAVSIAKRYRR--RGLALPDLIQEGSFGLMKAAERFDPEKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDFLNSVKRATRELSLELG----RHPTDEELAMRLQVTAQKIVFYRDAA--QSVLSMEQSRNFASRKGSGASQGGKSDMTLEDSLRDPEPLPEDRTQHA---MLKENLLQLL-GTLSPREQEVVRLRFGLD----DGRAR----TLEEIGQVFCVTRERVRQIESRALQKLR 324          
BLAST of mRNA_P-littoralis_Contig702.10.2 vs. uniprot
Match: A0A7S1ZIJ9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZIJ9_TRICV)

HSP 1 Score: 125 bits (314), Expect = 1.390e-27
Identity = 100/314 (31.85%), Postives = 162/314 (51.59%), Query Frame = 0
Query:  135 EERELCEQIVENARVQALQVEMERKESRPITVHEWAVAAGHPSAHQLMDALQEGRKAQRTVVLCHQGLVRSVAYRYKQ--VSRSLSLDDLTQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASILRAIADKDRLVRVPVHAQDTAMRILATSHALQLESGSAKGTPPTDAQLSLALGMPEASVTLYRKSSLPQNVADLDNPALSCSPEGSRGG-SVGRRGEGSMG--GEQWPWEASQLAQANVVRRDMMRAMEACLSPTEVRALRLRFGLEGMGKEGVARGGALTFTEIGRTMELSAEGIRKMVFRSIAKLQA 443
            EE EL  +  E  R+Q L  ++E +  R  T  EW  A+G  +A  L DA+++G +A+  +V  +  +V+ V   Y +  +    +  DL QEG V L++A EKFDP +G RFS+YA++ I+A++ R+   + R+V VP    +T  R+  T   L+ E G A    PT+ +L++A G+ E  +    ++ + Q    LD   ++ +  G+ GG S   RGE  M     +   +  +L      R  ++ AM   LSP EV  L LR+GL          GG LT  E+ R + L  + +R+M+ + + +L A
Sbjct:  197 EEVELGTKTQEAVRLQTLHDDLEAQLGRTPTDAEWCAASGKINAEALQDAIRDGMEAKNRLVTANLRMVQGVVNLYIRNGLGSQYNAGDLMQEGIVALIRAAEKFDPGRGFRFSTYAMYWIRAAVKRSQILQSRIVVVPQRLHETHKRVEKTRRQLRTELGRA----PTEEELAMACGLSELQLERCERA-MDQRCYSLDAELVNRNKPGAGGGPSRSGRGETVMDLVDARSHDDMHRLLSREHARESLIEAMRRYLSPHEVDLLLLRYGLMDERTLPHGFGGPLTIAEVSRLVGLKPDKVRRMINKCLRRLSA 505          
BLAST of mRNA_P-littoralis_Contig702.10.2 vs. uniprot
Match: A0A6H5K3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H4_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 3.160e-27
Identity = 96/280 (34.29%), Postives = 146/280 (52.14%), Query Frame = 0
Query:  165 TVHEWAVAAGHPSAHQLMDALQEGRKAQRTVVLCHQGLVRSVAYRYKQVSRSLSLDDLTQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASILRAIADKDRLVRVPVHAQDTAMRILATSHALQLESGSAKGTPPTDAQLSLALGMPEASVTLYRKSSLPQNVADLDNPALSCSPEGSRGGSVGRRGEGSMGGEQWPWEASQLAQANVVRRDMMRAMEACLSPTEVRALRLRFGLEGMGKEGVARGGAL--TFTEIGRTMELSAEGIRKMVFRSIAKLQ 442
            T  EWAVA G     +L+  L    KA+  ++  +  LV SVA RY+   + LS  DL QEG  GL++A EKFDP +G +FS+YA + IK SI+R IAD+ R++R+PVH  D   R+   +    LE     G  PTD +L+  L +    +  YR ++  Q    ++ P    S   +  G     G+G  G E+ P    + AQ++V+++ +   +   LS  E   ++ RFGL          GGAL  T  E+GR   L+ E +R++  R++ KL+
Sbjct:  228 TEEEWAVALGM-DREELVKELSRASKAKMAMLAANLRLVVSVAKRYR--FQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKAT----LEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAA--QATLSMEAPRTIASKTSTSPGKKVEMGQGVSGPEKTP---DKQAQSDVMKQKVTELLMT-LSIREQEVVKARFGL----------GGALPRTLEEVGRDFRLTRERVRQIEARALHKLR 484          
BLAST of mRNA_P-littoralis_Contig702.10.2 vs. uniprot
Match: A0A3M0YZM3_9CHLR (RNA polymerase sigma factor (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M0YZM3_9CHLR)

HSP 1 Score: 119 bits (297), Expect = 5.210e-27
Identity = 90/270 (33.33%), Postives = 145/270 (53.70%), Query Frame = 0
Query:  176 PSAHQLMDALQEGRKAQRTVVLCHQGLVRSVAYRYKQVSRSLSLDDLTQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASILRAIADKDRLVRVPVHAQDTAMRILATSHALQLESGSAKGTPPTDAQLSLALGMPEASVTLYRKSSLPQNVADLDNPALSCSPEGSRGGSVGRRGEGSMGG---EQWPWEASQLAQANVVRRDMMRAMEACLSPTEVRALRLRFGLEGMGKEGVARGGALTFTEIGRTMELSAEGIRKMVFRSIAKLQ 442
            P A +L    ++G +A++ +   +  LV S+A RY+   R L L DL QEG++GLL+A+EKFD TKG +FS+YA + IK ++ RA+AD+ RLVR+PVH  +T  RI A    L      + G  PTDA+L+  LGM E  +   R+++  Q+   L  P             VG   + ++     +    +A   A + ++R+ +  A++  LS  E R L LR+GL        A G   T  E+G+   ++ E +R++  +++ KL+
Sbjct:    7 PEAAKLRRIKEQGDEARQKMAAANLRLVVSIAKRYRD--RGLPLLDLIQEGSLGLLRAIEKFDHTKGYKFSTYATWWIKQALSRALADQSRLVRLPVHLGETLNRIQAARRQLT----QSLGREPTDAELANHLGMSEEKLRELRRTA--QDPVSLATP-------------VGEEADSTLADFIPDPHALDADDAAASGMLRQQIAAALDQ-LSERERRVLELRYGL--------ADGQPRTLEEVGKAFGVTRERVRQIEVKALRKLR 246          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig702.10.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMH8_9PHAE3.610e-18775.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPW8_ECTSI3.110e-18181.43RpoD n=1 Tax=Ectocarpus siliculosus TaxID=2880 Rep... [more]
A0A835ZDU2_9STRA2.340e-5739.14RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
Q39515_CYACA2.860e-3031.86Chloroplast RNA polymerase sigma subunit n=2 Tax=C... [more]
A0A7S2WX55_9STRA6.690e-2933.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835ZES3_9STRA1.170e-2835.25RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A835ZBY3_9STRA2.370e-2832.91RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A7S1ZIJ9_TRICV1.390e-2731.85Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A6H5K3H4_9PHAE3.160e-2734.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3M0YZM3_9CHLR5.210e-2733.33RNA polymerase sigma factor (Fragment) n=1 Tax=Chl... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 221..234
score: 64.19
coord: 245..253
score: 53.26
coord: 415..430
score: 32.62
coord: 430..441
score: 28.39
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 266..323
e-value: 5.0E-5
score: 25.3
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 365..449
e-value: 1.6E-8
score: 36.3
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 196..266
e-value: 3.9E-18
score: 65.0
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 191..442
e-value: 1.5E-22
score: 77.9
NoneNo IPR availableGENE3D1.20.120.1810coord: 89..265
e-value: 2.6E-30
score: 107.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 334..362
NoneNo IPR availablePANTHERPTHR30603:SF45RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTICcoord: 131..456
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 131..456
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 372..450
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 128..266

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig702contigP-littoralis_Contig702:25870..28319 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig702.10.2mRNA_P-littoralis_Contig702.10.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig702 25721..29218 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig702.10.2 ID=prot_P-littoralis_Contig702.10.2|Name=mRNA_P-littoralis_Contig702.10.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=459bp
MMEQRHSVGRNNATSRRRRRHCCRHFWAAMIVCALGSSSGGQSRNAGVSA
FGSGGGLSQQLLSRSSRRAGDGIDEGLLLQQLSPAVRRRQLSRTGEERGE
ALSAASRRGAFIVEGGHNHAAASTTKDWRDLGVEEERELCEQIVENARVQ
ALQVEMERKESRPITVHEWAVAAGHPSAHQLMDALQEGRKAQRTVVLCHQ
GLVRSVAYRYKQVSRSLSLDDLTQEGNVGLLQAVEKFDPTKGTRFSSYAV
FRIKASILRAIADKDRLVRVPVHAQDTAMRILATSHALQLESGSAKGTPP
TDAQLSLALGMPEASVTLYRKSSLPQNVADLDNPALSCSPEGSRGGSVGR
RGEGSMGGEQWPWEASQLAQANVVRRDMMRAMEACLSPTEVRALRLRFGL
EGMGKEGVARGGALTFTEIGRTMELSAEGIRKMVFRSIAKLQASDEANGL
LLAYSDLI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000943RNA_pol_sigma70
IPR036388WH-like_DNA-bd_sf
IPR007627RNA_pol_sigma70_r2
IPR014284RNA_pol_sigma-70_dom
IPR013324RNA_pol_sigma_r3/r4-like
IPR013325RNA_pol_sigma_r2