mRNA_P-littoralis_Contig700.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig700.5.1
Unique NamemRNA_P-littoralis_Contig700.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig700.5.1 vs. uniprot
Match: D8LIS5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIS5_ECTSI)

HSP 1 Score: 397 bits (1019), Expect = 5.030e-128
Identity = 234/370 (63.24%), Postives = 262/370 (70.81%), Query Frame = 1
Query:  346 GGTSTAWTCQSCSADNCTNGDVTR-SDGHNSSSSGGNACYLCCQPRQQERRLSAVETEYRSFDDREGNGTGAGGGYS-EKG--QXXXXXXXRRVTVTLAQIRGLEEPPEPTLTPGEWSIVEAKALARGDEATPCPICRETFRGESQIILSCSHVFHKACLSAFEKFLRVQERSCPLCRKVDYQKRATKQGAVAWRQQCARRLQCAYRRHRARREYRVLLRRHYNAGFGNTLRRREFLSGQAAKTAGKLAVALEDRGDAIDRLFGEFDRSLAFSREVFGPVSAATSSSPPGSLEGRXXXXXXXXXXXXXDSHLQHPLPSSSRDSNGSPQSTVLFSETSEKVRARTWKEAWIKAGDRGEDECPICMCSMEPV 1443
            GG + AWTC +CSA N    D T    GH  +   G  C +C QPR++ R     + +          G G+ G  S E G  +       RRV VTLAQIRGLEEPPEPTLTPGEW  VEAKALARGDEA PCPICRE+FRGESQ+ILSCSHVFHKACLS+FEKFLR QERSCPLCRKVDYQK+AT+QGAVAWRQ+CARRLQCAYRRHRARR+YR LLRRHY AG G+TLRRREFLSGQAA+TAGKLA ALEDRGD IDRLFGEFDRSLAFSR+VFGP S  TS+ P  +    XXXXXXXXXXXXX                            S++ R   WKEAW+KAG+R EDECPICMC M+P+
Sbjct:   96 GGRTAAWTCHACSAQNYAMDDDTHPGQGHGIAEEAGQRCSVCVQPRRRWRLPGGEDGDI--------GGLGSDGRSSCEDGVHEGEEQHQPRRVAVTLAQIRGLEEPPEPTLTPGEWRAVEAKALARGDEAAPCPICRESFRGESQVILSCSHVFHKACLSSFEKFLRAQERSCPLCRKVDYQKKATRQGAVAWRQRCARRLQCAYRRHRARRQYRGLLRRHYGAGLGDTLRRREFLSGQAAETAGKLAAALEDRGDTIDRLFGEFDRSLAFSRQVFGPAS--TSTDPLTATTATXXXXXXXXXXXXXXXXXXXXX----------XXXXXXXVTPSKERRVVVWKEAWVKAGERAEDECPICMCPMQPI 445          
BLAST of mRNA_P-littoralis_Contig700.5.1 vs. uniprot
Match: A0A6G0WX15_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WX15_9STRA)

HSP 1 Score: 218 bits (556), Expect = 7.430e-62
Identity = 131/360 (36.39%), Postives = 179/360 (49.72%), Query Frame = 1
Query:  607 RRVTVTLAQIRGLEEPPEPTLTPGEWSIVEAKALARGDEATPCPICRETFRGESQIILSCSHVFHKACLSAFEKFLRVQERSCPLCRKVDYQKRATKQGAVAWRQQCARRLQCAYRRHRARREYRVLLRRHYNAGFGNTLRRREFLSGQAAKTAGKLAVALEDRGDAIDRLFGEFDRSLAFSREVFGPVSAATSSSPPGSLEGRXXXXXXXXXXXXXDSHLQHPLPSSSRDSNGSPQSTVLFSETSEKVRARTWKEAWIKAGDRGEDECPICMCSMEPVSAGNGXXXXXXXXXXXXXXXXXXGEXXXXXXXRCQRRGDGGKQRDRLLLSCSHVFHKACLEAFEGFNIYEVHLCPVCRQDY 1686
            RR+ +TLAQ +GL + P P L+  +W   EAKA  RGD A PC ICRE F  ++++ILSCSH+FH  CL++FE+FLR  +R CPLCRK +YQKR TKQG   +R QCA ++Q   RR  AR+ Y  LL   Y +G G+  RR+ F + + +  + ++  A++ R D+ID L  EFD+S++ SR+V    S+ T++S   S +G                                             +    W EA  KA  R E ECPIC+  ++  +                                          +   LLSCSHV H  CL+AFE FNIYE+HLCPVCR  Y
Sbjct:   98 RRIKLTLAQKKGLVQAPPPKLSQNQWEECEAKAEERGDTAHPCSICREPFGLDAKVILSCSHMFHHNCLASFERFLRTNQRVCPLCRKQNYQKRLTKQGERIYRMQCAVKVQACVRRFLARKRYPQLLNEFYKSGRGSPSRRKTFYATKLSSISSRIVRAIDAREDSIDALLAEFDKSMSLSRQVLNGESSTTTAS---SCDGL--------------------------------------------MTVDKWHEALRKAVLRDEKECPICINLIDSAT------------------------------------------KPVTLLSCSHVLHTDCLDAFESFNIYEIHLCPVCRSHY 368          
BLAST of mRNA_P-littoralis_Contig700.5.1 vs. uniprot
Match: A0A024U460_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U460_9STRA)

HSP 1 Score: 209 bits (531), Expect = 3.780e-58
Identity = 129/362 (35.64%), Postives = 173/362 (47.79%), Query Frame = 1
Query:  607 RRVTVTLAQIRGLEEPPEPTLTPGEWSIVEAKALARGDEATPCPICRETFRGESQIILSCSHVFHKACLSAFEKFLRVQERSCPLCRKVDYQKRATKQGAVAWRQQCARRLQCAYRRHRARREYRVLLRRHYNAGFGNTLRRREFLSGQAAKTAGKLAVALEDRGDAIDRLFGEFDRSLAFSREVFGPVSAATSSSPPGSLEGRXXXXXXXXXXXXXDSHLQHPLPSSSRDSNGSPQSTVLFSETSEKVRARTWKEAWIKAGDRGEDECPICMCSMEPVSAGNGXXXXXXXXXXXXXXXXXXGEXXXXXXXRCQRRGDGGKQRDRLLLSCSHVFHKACLEAFEGFNIYEVHLCPVCRQDYKS 1692
            RR  +TLAQ +GL + P P L+  +W   EAKA  RGD   PC ICRE F    ++ILSC+H+FH+ CL++FE+FLR  +R CPLCRK +YQKR TKQG  ++R QC  ++Q   R   ARR +  LLR+++ AG G+  RR+ F + + +  + ++  A+E R D+ID L   FD+SL  SR VF P                                            NG+    ++  +         W +   KA  R E ECPIC  S++  +                                          +   LLSCSHV H  CL AFE FNIYEVHLCPVCR  Y+S
Sbjct:  122 RRHKLTLAQKKGLVQAPPPKLSQNQWEDCEAKAEERGDTVHPCSICREPFGLAPKVILSCTHMFHQNCLASFERFLRTNQRVCPLCRKQNYQKRHTKQGEQSFRIQCTIKIQSFVRGFIARRRFPSLLRQYFKAGLGSPTRRQAFYASKISNLSDRIVCAIEAREDSIDALLASFDKSLTLSRHVFRPDQG-----------------------------------------NGAAAGNLMTQDK--------WNDTLRKALVRDEKECPICYNSIDCFTT-----------------------------------------KPIALLSCSHVLHADCLHAFETFNIYEVHLCPVCRAKYES 393          
BLAST of mRNA_P-littoralis_Contig700.5.1 vs. uniprot
Match: T0QW99_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QW99_SAPDV)

HSP 1 Score: 206 bits (525), Expect = 1.420e-57
Identity = 128/362 (35.36%), Postives = 166/362 (45.86%), Query Frame = 1
Query:  607 RRVTVTLAQIRGLEEPPEPTLTPGEWSIVEAKALARGDEATPCPICRETFRGESQIILSCSHVFHKACLSAFEKFLRVQERSCPLCRKVDYQKRATKQGAVAWRQQCARRLQCAYRRHRARREYRVLLRRHYNAGFGNTLRRREFLSGQAAKTAGKLAVALEDRGDAIDRLFGEFDRSLAFSREVFGPVSAATSSSPPGSLEGRXXXXXXXXXXXXXDSHLQHPLPSSSRDSNGSPQSTVLFSETSEKVRARTWKEAWIKAGDRGEDECPICMCSMEPVSAGNGXXXXXXXXXXXXXXXXXXGEXXXXXXXRCQRRGDGGKQRDRLLLSCSHVFHKACLEAFEGFNIYEVHLCPVCRQDYKS 1692
            RR  +TLAQ +GL   P P L   +W  VE +A ARGD   PC ICRE F   ++++LSCSH+FH  CL++FE+FLR  +R CPLCRK +Y+K+AT+ G   +R  CARRLQ   R   ARR Y  LL  +Y  G+G+  RR  F + + +  + ++  A++ R D+ID L  EFD S++ SR +F                                              NG            E  +   W  A  KA  R E ECPIC+ +M   +                                              LLSCSHV H  CL AFE FNIYEVHLCPVCR  Y+S
Sbjct:  103 RRPRLTLAQKKGLVPGPPPRLNNNQWEDVEQQAEARGDAEYPCSICREPFGVHAKVLLSCSHMFHHTCLTSFERFLRTTDRVCPLCRKQNYEKKATQSGEAHFRSICARRLQARIRGWLARRRYTSLLAHYYKQGYGDPRRRSLFYASKVSAISSRIVRAMKARADSIDALLAEFDESMSRSRAIF----------------------------------------------NGE--------NNQETAKGNAWPNALAKATARNEAECPICLNAMSAKAV--------------------------------------------TLLSCSHVLHAECLVAFESFNIYEVHLCPVCRGHYES 366          
BLAST of mRNA_P-littoralis_Contig700.5.1 vs. uniprot
Match: A0A067C9I3_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C9I3_SAPPC)

HSP 1 Score: 176 bits (447), Expect = 3.790e-46
Identity = 127/380 (33.42%), Postives = 164/380 (43.16%), Query Frame = 1
Query:  607 RRVTVTLAQIRGLEEPPEPTLTPGEWSIVEAKALARGDEATPCPICRETFRGESQIILSCSHVFHKACLSAFEKFLRVQERSCPLCRKVDYQKR----ATKQGAVAWR--------------QQCARRLQCAYRRHRARREYRVLLRRHYNAGFGNTLRRREFLSGQAAKTAGKLAVALEDRGDAIDRLFGEFDRSLAFSREVFGPVSAATSSSPPGSLEGRXXXXXXXXXXXXXDSHLQHPLPSSSRDSNGSPQSTVLFSETSEKVRARTWKEAWIKAGDRGEDECPICMCSMEPVSAGNGXXXXXXXXXXXXXXXXXXGEXXXXXXXRCQRRGDGGKQRDRLLLSCSHVFHKACLEAFEGFNIYEVHLCPVCRQDYKS 1692
            RR  +TLAQ +GL   P P L   +W  VE +A ARGD   PC ICRE F    +++LSCSHVFH+ACL++FE+FLR  +R CPLCRK +Y+K+    A +  A + R                C    Q   R   ARR Y  LL  +Y  G G+  RR  F + + +  + ++  A++ R D+ID L  EFD S++ SR +F   S  T+                                                 ET+    A  W  A  KA  R E ECPIC+ +M   +                                              LLSCSHV H  CL AFE FNIYEVHLCPVCR  Y+S
Sbjct:  102 RRPRLTLAQKKGLMPGPPPRLNNNQWEDVEQQAEARGDAVYPCSICREPFGVSPKVLLSCSHVFHQACLTSFERFLRTTDRVCPLCRKQNYEKKPHEPANRSIAASARVGFRCDDASPKTLSHLCD--AQARIRGWLARRRYPSLLAHYYKQGNGDPRRRSLFYASKVSAISSRIVRAMKARADSIDALLAEFDESMSRSRAIF---SGETNQ------------------------------------------------ETANGKVASQWTTALAKATARNEAECPICLNAMSAKAV--------------------------------------------TLLSCSHVLHAECLVAFESFNIYEVHLCPVCRGHYES 384          
BLAST of mRNA_P-littoralis_Contig700.5.1 vs. uniprot
Match: A0A8K1C7G8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7G8_PYTOL)

HSP 1 Score: 170 bits (431), Expect = 3.800e-44
Identity = 88/183 (48.09%), Postives = 117/183 (63.93%), Query Frame = 1
Query:  649 EPPEPTLTPGEWSIVEAKALARGDEATPCPICRETFRGESQIILSCSHVFHKACLSAFEKFLRVQERSCPLCRKVDYQKRATKQGAVAWRQQCARRLQCAYRRHRARREYRVLLRRHYNAGFGNTLRRREFLSGQAAKTAGKLAVALEDRGDAIDRLFGEFDRSLAFSREVFGPVSAATSSSP 1197
            E P P L+  +W   E +AL RGD   PC ICRE+F  + Q+ILSCSH+FH AC+ +FE+FLR ++R CPLCRK +YQKRAT +GAV  R +CA R+Q  +R  R RR    L  + Y  G G+ +RRR FL+ +  KT  +L  A+  R D+ID L  EFD++L+ SR+VF P    T   P
Sbjct:   99 EAPPPKLSRDDWERCENQALERGDVNHPCSICRESFGVQEQVILSCSHMFHLACIQSFERFLRTKQRVCPLCRKDNYQKRATVKGAVIHRDKCALRIQTMFRGFRERRRLDSLWHQFYRQGKGDPVRRRRFLANRIGKTTDRLVGAMRARDDSIDALLAEFDKTLSLSRQVFDPSQPQTDDDP 281          
BLAST of mRNA_P-littoralis_Contig700.5.1 vs. uniprot
Match: A0A6A3MY24_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MY24_9STRA)

HSP 1 Score: 171 bits (434), Expect = 3.800e-44
Identity = 90/193 (46.63%), Postives = 122/193 (63.21%), Query Frame = 1
Query:  619 VTLAQIRGLEEPPEPTLTPGEWSIVEAKALARGDEATPCPICRETFRGESQIILSCSHVFHKACLSAFEKFLRVQERSCPLCRKVDYQKRATKQGAVAWRQQCARRLQCAYRRHRARREYRVLLRRHYNAGFGNTLRRREFLSGQAAKTAGKLAVALEDRGDAIDRLFGEFDRSLAFSREVFGPVSAATSSSP 1197
            +TLAQ RGL + P P LT  EW   E +A ARGD   PC ICRE+F  + Q+ILSCSH+FH AC+++FE+FLR  +R CPLCRK +YQKR T   +   R   A+R+Q   R   ARR+   L ++ Y++G G+ +RRR F + +  KT  +L  A+  R D+ID L  EFD+SL+ SR VF   +  T + P
Sbjct:  128 LTLAQKRGLVKRPPPKLTRDEWEDCEQQAEARGDTQHPCSICRESFGVKEQVILSCSHMFHLACITSFERFLRTNQRVCPLCRKQNYQKRNTTMASAFHRDYSAKRIQAVLRGFLARRQAAGLWQKFYSSGKGDPIRRRRFFANRVGKTTDRLVTAMSKRDDSIDALLAEFDKSLSMSRRVFQDNAPETETDP 320          
BLAST of mRNA_P-littoralis_Contig700.5.1 vs. uniprot
Match: W4GXZ0_9STRA (RING-type domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GXZ0_9STRA)

HSP 1 Score: 169 bits (428), Expect = 5.960e-44
Identity = 87/186 (46.77%), Postives = 123/186 (66.13%), Query Frame = 1
Query:  607 RRVTVTLAQIRGLEEPPEPTLTPGEWSIVEAKALARGDEATPCPICRETFRGESQIILSCSHVFHKACLSAFEKFLRVQERSCPLCRKVDYQKRATKQGAVAWRQQCARRLQCAYRRHRARREYRVLLRRHYNAGFGNTLRRREFLSGQAAKTAGKLAVALEDRGDAIDRLFGEFDRSLAFSREVF 1164
            RR  ++LAQ +GL + P P L+  +W   EAKA  RGD   PC ICRE+F  + ++ILSCSH+FH  CL++FE+FLR  +R CPLCRK +YQKR T QG   +R QCA ++Q   R + ARR +  LLR+++ +G G+  RR+EF + + +  + ++  A+E R D+ID L   FD+SL  SR VF
Sbjct:  113 RRSKLSLAQKKGLVQAPPPKLSQNQWEDCEAKAEERGDTMHPCSICRESFGVQPKVILSCSHMFHHNCLASFERFLRTNQRVCPLCRKQNYQKRHTNQGERGYRIQCAVKIQTFVRGYFARRRFPALLRQYFKSGNGSPRRRQEFYASKISNISDRIVDAIEAREDSIDALLATFDKSLTLSRHVF 298          
BLAST of mRNA_P-littoralis_Contig700.5.1 vs. uniprot
Match: A0A7S1CAV5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CAV5_9STRA)

HSP 1 Score: 161 bits (408), Expect = 3.150e-41
Identity = 127/373 (34.05%), Postives = 164/373 (43.97%), Query Frame = 1
Query:  619 VTLAQIRGLEEPPEPTLTPGEWSIVEAKALARGDEATP----------------CPICRETFRGESQIILSCSHVFHKACLSAFEKFLRVQERSCPLCRKVDYQKRATKQGAVAWRQQCARRLQCAYRRHRARREYRVLLRRHYNAGFGNTLRRREFLSGQAAKTAGKLAVALEDRGDAIDRLFGEFDRSLAFSREVFGPVSAATSSSPPGSLEGRXXXXXXXXXXXXXDSHLQHPLPSSSRDSNGSPQSTVLFSETSEKVRARTWKEAWIKAGDRGEDECPICMCSMEPVSAGNGXXXXXXXXXXXXXXXXXXGEXXXXXXXRCQRRGDGGKQRDRLLLSCSHVFHKACLEAFEGFNIYEVHLCPVCRQDYK 1689
            +TLAQ  GL   P P +T  +W  V   + AR   A                  C IC E       ++LSCSH+FHKACL +FE+F R +ER+CP+CR  +Y+KR T+ GA      CA  LQ  +R HR R  +    R +Y AG G+  RRR F + + ++ + +L  AL D  DA+D LF + D  +  SRE F     A +       +   XXXXXXXXXXXX           S D    P            V A  W  A   A +R   ECPIC+                                               K R  +LLSCSHVFH  C+ AFE F+ Y+   CPVCRQ Y+
Sbjct:    9 MTLAQRLGLVPAPAPEMTTQQWQEVARASEARLAAAXXXXXXXXXXXXXXXGGSCAICLERLGMAEALLLSCSHIFHKACLESFERFSRARERTCPMCRAANYEKRPTRVGAKRHVHACATVLQARWRGHRTRVAFAEQRRAYYAAGKGDPARRRRFFAERMSEVSTRLEDALADEDDALDALFAQLDADVEASREAFRAHGRAVAHHHDRHRDAADXXXXXXXXXXXXXXXX-------SGDVAPHPGHASSLDRLVPSVSAEQWAAAEAAAVERAVTECPICIADFSL------------------------------------------KPRSTVLLSCSHVFHATCIAAFESFSPYDAPACPVCRQHYR 332          
BLAST of mRNA_P-littoralis_Contig700.5.1 vs. uniprot
Match: UPI001CF593DF (RING finger protein 32-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF593DF)

HSP 1 Score: 154 bits (388), Expect = 3.560e-38
Identity = 113/375 (30.13%), Postives = 163/375 (43.47%), Query Frame = 1
Query:  571 SEKGQXXXXXXXRRVTVTLAQIRGLEEPPEPTLTPGEWSIVEAKALARGDEATPCPICRETFRGESQIILSCSHVFHKACLSAFEKFLRVQERSCPLCRKVDYQKRATKQGAVAWRQQCARRLQCAYRRHRARREYRVLLRRHYNAGFGNTLRRREFLSGQAAKTAGKLAVALEDRGDAIDRLFGEFDRSLAFSREVFGPVSAATSSSPPGSLEGRXXXXXXXXXXXXXDSHLQHPLPSSSRDSNGSPQSTVLFSETSEKVRARTWKEAWIKAGDRGEDECPICMCSM--EPVSAGNGXXXXXXXXXXXXXXXXXXGEXXXXXXXRCQRRGDGGKQRDRLLLSCSHVFHKACLEAFEGFNIYEVHLCPVCRQDYK 1689
            +E G+       +   ++LAQ  GL E PE  L+  EW  V+ K+ +R D A PC IC+E F  + Q++LSCSHVFH+ACL AFEKF     +SCP+CRK  YQ+R   +GA   R +CA R+Q A+R    R+ Y+ L          +   R++F   +    + +L  ++E R   +D L  E D+S+A SR     +         G++EG                                       +ET        W    ++A  R   +CPIC+  +  E V   N                                       R  +LLSCSHVFH  CL+AFE F++ + H+CPVCR  Y+
Sbjct:   74 NESGKQEYNLDPKPAPLSLAQKMGLIEAPELLLSEKEWKEVKEKSNSRQDSALPCVICKEDFGLQQQVLLSCSHVFHRACLEAFEKFSG--RKSCPMCRKEQYQRRIIHEGAREHRLKCATRIQAAWRGFIVRQWYKKL---RQTVPPKDPKLRKKFYEDKFQNISDRLLQSMEARNQRVDDLLLEIDQSIAASRHTMRQID--------GNIEG-------------------------------------TMAETH-------WDHVQLQAVQRAVSDCPICIMPLGEEGVHLSN------------------------------------NPSRPTVLLSCSHVFHATCLQAFEEFSLDKHHVCPVCRSLYE 355          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig700.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIS5_ECTSI5.030e-12863.24RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6G0WX15_9STRA7.430e-6236.39Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024U460_9STRA3.780e-5835.64Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
T0QW99_SAPDV1.420e-5735.36Uncharacterized protein n=2 Tax=Saprolegnia diclin... [more]
A0A067C9I3_SAPPC3.790e-4633.42Uncharacterized protein n=2 Tax=Saprolegnia parasi... [more]
A0A8K1C7G8_PYTOL3.800e-4448.09Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A3MY24_9STRA3.800e-4446.63Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
W4GXZ0_9STRA5.960e-4446.77RING-type domain-containing protein n=2 Tax=Aphano... [more]
A0A7S1CAV5_9STRA3.150e-4134.05Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
UPI001CF593DF3.560e-3830.13RING finger protein 32-like n=1 Tax=Acropora mille... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig700contigP-littoralis_Contig700:28935..33216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LIS5
PFAMszf-RING_2
Model size1713
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue8.24e-129
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota
Descriptionubiquitin-protein transferase activity
Cds size1713
COG categoryO
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig700.5.1prot_P-littoralis_Contig700.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig700 28935..33216 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791467.4489832-CDS-P-littoralis_Contig700:28934..290301680791467.4489832-CDS-P-littoralis_Contig700:28934..29030Pylaiella littoralis U1_48CDSP-littoralis_Contig700 28935..29030 -
1680791467.4602935-CDS-P-littoralis_Contig700:29625..301271680791467.4602935-CDS-P-littoralis_Contig700:29625..30127Pylaiella littoralis U1_48CDSP-littoralis_Contig700 29626..30127 -
1680791467.4742267-CDS-P-littoralis_Contig700:31052..312661680791467.4742267-CDS-P-littoralis_Contig700:31052..31266Pylaiella littoralis U1_48CDSP-littoralis_Contig700 31053..31266 -
1680791467.4872773-CDS-P-littoralis_Contig700:31480..315751680791467.4872773-CDS-P-littoralis_Contig700:31480..31575Pylaiella littoralis U1_48CDSP-littoralis_Contig700 31481..31575 -
1680791467.4996848-CDS-P-littoralis_Contig700:31935..320551680791467.4996848-CDS-P-littoralis_Contig700:31935..32055Pylaiella littoralis U1_48CDSP-littoralis_Contig700 31936..32055 -
1680791467.5118852-CDS-P-littoralis_Contig700:32530..332161680791467.5118852-CDS-P-littoralis_Contig700:32530..33216Pylaiella littoralis U1_48CDSP-littoralis_Contig700 32531..33216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig700.5.1

>prot_P-littoralis_Contig700.5.1 ID=prot_P-littoralis_Contig700.5.1|Name=mRNA_P-littoralis_Contig700.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=571bp
HNKSQQKAEGSSSGQLAGGSSRTLLRRRRPLHHRTLDEVSERVLDAAALQ
DSLIGRMKLDLGVQAPRAVVVLGGNGAERGGTRRRRGGGVVAKGRQPDEN
ADNPPVSTAAAIGRTGGTSTAWTCQSCSADNCTNGDVTRSDGHNSSSSGG
NACYLCCQPRQQERRLSAVETEYRSFDDREGNGTGAGGGYSEKGQEEKHH
HQRRVTVTLAQIRGLEEPPEPTLTPGEWSIVEAKALARGDEATPCPICRE
TFRGESQIILSCSHVFHKACLSAFEKFLRVQERSCPLCRKVDYQKRATKQ
GAVAWRQQCARRLQCAYRRHRARREYRVLLRRHYNAGFGNTLRRREFLSG
QAAKTAGKLAVALEDRGDAIDRLFGEFDRSLAFSREVFGPVSAATSSSPP
GSLEGRNNGRHHENNNHNNDSHLQHPLPSSSRDSNGSPQSTVLFSETSEK
VRARTWKEAWIKAGDRGEDECPICMCSMEPVSAGNGDGNGDGDNEGGSNR
NVSAGERRRQRRQRCQRRGDGGKQRDRLLLSCSHVFHKACLEAFEGFNIY
EVHLCPVCRQDYKSVDPSRHH
back to top

mRNA from alignment at P-littoralis_Contig700:28935..33216-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig700.5.1 ID=mRNA_P-littoralis_Contig700.5.1|Name=mRNA_P-littoralis_Contig700.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4282bp|location=Sequence derived from alignment at P-littoralis_Contig700:28935..33216- (Pylaiella littoralis U1_48)
CACAATAAAAGCCAACAAAAGGCTGAAGGAAGCTCTAGCGGCCAACTAGC AGGTGGATCGTCTCGAACCTTGCTGCGTCGTCGTCGCCCACTCCATCATC GAACTCTTGACGAGGTATCGGAGAGGGTTCTTGACGCGGCGGCTCTCCAA GACAGCCTCATAGGACGCATGAAGCTCGACCTTGGAGTTCAAGCGCCTCG GGCCGTCGTAGTTCTTGGCGGGAATGGCGCGGAGAGAGGCGGGACACGAA GAAGACGAGGGGGCGGCGTAGTGGCCAAAGGCAGACAACCGGACGAAAAC GCTGACAACCCTCCCGTATCAACGGCGGCGGCCATCGGGCGAACTGGCGG TACTTCCACCGCCTGGACTTGTCAATCTTGCTCCGCAGACAACTGTACCA ACGGTGATGTCACCAGAAGCGACGGACACAATAGCAGCAGTAGCGGTGGG AACGCCTGCTACCTGTGCTGCCAACCTAGACAACAGGAGCGGCGACTATC TGCTGTCGAAACAGAGTACAGGAGTTTTGATGATAGAGAGGGAAATGGAA CCGGCGCCGGTGGAGGTTATTCCGAGAAGGGCCAAGAGGAGAAGCACCAC CACCAGCGAAGAGTAACCGTCACCTTGGCACAGATTCGTGGTTTGGAAGA ACCGCCAGAGCCGACGCTTACCCCAGGGGAATGGAGGTGCGAAAACAAAC GTAGAAAAAAACACAAAGTGGGTGTGCACACTCTAGATGCAACGTTGTTC GCACCTTGATTTGTTGATCAAAGCACTTGTTCAACATAAAAAGCCGCAAG AATCATTATTTTATTATCATTGCCAAGCGGTGCTATCATACACTAGCTGT AGACTTTCCAACCGTGGACGAATATATAGGCAGAGGATGGAACGTCAAAA CACGCCCGAACTAACAGATTGAAAAAAACAAAAAAAATACAGGTCGGCGT TTTGACGCTTTTCTTGGGCAGGAAAAAGATGTACGCGTTGTGCTGCTTCC TACATGTGTACATGCGCCCCAAAATATGTCTTACGTCGCATTATTTCAGC CCAGCGGGAGTCGGCATGATTCGAGTTTTCCACCGCTTAGAAGAGTGACT GATCACCACTATGTCAATGGGACGGCTCTTACACACCCCCTCCCTCCTCT GCCCTGGCCAGCATCGTCGAAGCCAAGGCGTTGGCGAGGGGGGACGAGGC GACCCCGTGCCCGATCTGCCGGGAGACGTTTCGTGGCGAGAGCCAAATAA TCCTGAGCTGCAGTCACGTGTTCCACAAAGCGTGAGTGTTTGCCGTGATG CCCCCGTTTGGTTAAAATGTAGACATGATTTACTAAATATACCCCCACGG ACTACTGCCTTTTGGCTGCTCATTTCAAGAGCGGGACGAGTGCCTTGTAT CTTGTGTTTCGGATCTCACTCAAGTTCGCGATGTGTAGTAGAGTAGGTGA TTGCGAGCAGTATTATGAACAAAATCAATCAGCAGCCAATCCATGAATAG CAGCGTGAAACAGCAAACAATACTCGTACATTTTTGTGACGGTATGACTC AACTCAAAAATCAAAACCCAAACCCAAACCCAAACCCAAACCTAAACCTA AACCCAAACCTAGACCCAAGCCTAAACCCGAACCCAAGCAGGTGCCTGTC GGCCTTCGAGAAGTTTCTTCGGGTGCAGGAGCGGAGCTGCCCCTTGTGCC GAAAAGTAGACTACCAGAAGAGGGCAACGAAACAAGGTCAGCAGCAACAC ACTCCTTGTACATACAAGATGCCCCCCACCCAGTCACCCCACAAAACTTG ATCGACTCCAAAGAGTTTTCGGCCGTTACGAAAACGAAAAAATCTTTTGA ATCTAATCCTAGCGCTGGCCCAAACTCTGACGAAAGTCTCAACCTATAAT CTAGCCTTCGCCCGTGCTCGCCCCTTCATTGATTTCTCGCGTGCGCTCAG GAGCCGTGGCGTGGCGCCAGCAGTGCGCGCGGCGACTGCAATGCGCCTAC CGACGACACAGAGCACGGCGAGAGTACCGCGTTCTTCTAAGGAGGCACTA CAATGCGGGGTTCGGGAACACCCTGAGGCGGCGGGAGTTCCTGAGCGGGC AGGCGGCGAAGACAGCGGGGAAGCTGGCGGTCGCGCTGGAGGACCGGGGG GATGCGATAGACAGGTATGACGTTTTAAGGTGTGTATCAAATGTGGTTGC ATCTTTATGCTAGGTGCTTGGACGAGGGATATATGTGCGAAGATTGACTC AGTTCCTTCTGTATTATCGAGTGAGTGGTCGGGGGAGCAACTTCAACCAA CACAGACGAGTGTGCGCTCTCCCCGGTTTCCCCCACACCGTATGCCTCCG CATATCACAGAAACTCCCCAATCCCCGCGAATCAATATATCTGCCGAATA ACACAAACATGTAATGATGGTACCTCGCGCTAAGAGATTTGTGTGCAACG TGGTACATTGCGTGTGTCTTTGTGCTTCTCCAGGCACAGCCCGTGTCAAA AATAGCCGCCAATGTAGACCTTGACCCGTGTTGGTCGGTGGCGTTTCTCC TCCCAGCTCTAGAAGCACTTTGAGGGTCCATCACACATTCCCCTGGCCCT GTGAGCCTTCCCTCCCGAGGCTCCGCCTCCCAACATTGACACCACGCTGA TTTAATGCCAAGGGTCAGAAAGGAGAGCAGTAGATCACGCAATCACCGCC GGGTTAGCGGCCACCGCCGCCGCCGCCACCGCTACCACTACCACCGCCGA TCGCACGGGTGATAAAGACACGGCAACTCGTTTCAGCAGAATTCATCTAC TCTTTTCCCCCCGCCGAGGGCACCGACGGACATTTACATGATCCGTGCAA AATTACTGCACCCTCTGAGAGTAACGTTGCACCACCATCGCCATCTTGTT GATGACGTGCTCGCTGTGTGTGTCGTGTAACGTTCGTGCCGCCAATGAGC AGCCATCGCGATAGACAAATCATGCCTCAAGAAGGTGGCCTAGCACCGCT CTTCACACATCAGGTGTGTCTGATTGATTTATTTGCACCTGAGCCACCGC ACCAATGCCTGTCGTGTGATGTCTACTCACGTCGATCAGGCTTTTCGGCG AGTTTGATCGCAGCCTGGCGTTCAGCAGGGAGGTTTTTGGGCCCGTGTCA GCAGCTACATCATCATCACCGCCCGGCTCGTTAGAAGGGAGAAACAACGG CCGCCACCACGAGAATAACAACCACAACAACGACAGCCACCTCCAACACC CACTCCCGTCTTCCTCGAGAGACAGCAACGGTAGCCCTCAGTCGACGGTT TTATTCTCCGAAACGTCCGAAAAGGTGCGCGCCAGAACGTGGAAGGAGGC GTGGATCAAAGCTGGGGACAGGGGGGAGGACGAGTGCCCCATTTGTATGT GTTCCATGGAGCCAGTTTCCGCCGGCAACGGCGACGGCAATGGCGACGGC GACAACGAGGGCGGCAGCAACAGGAACGTAAGCGCTGGCGAGCGGCGGCG GCAGCGGCGGCAGCGATGTCAGCGACGAGGGGACGGCGGGAAACAACGGG ATAGGTTGCTGCTCAGCTGCAGTCATGTCTTCCACAAGGCGGTGAGTCAA CGAGAAGGGTGTATGTGTATGGTGCGACAGGGGCACGGCGGGATGGGAAG GGATTGGGGGGGATTGGCTTTTTTTTTTCATTCTACTCATTTGGCCATTA GTGGCCACGTACCACACCTTTTTTGCGAGGCGGGGGGAGGGATGGGAGTT ATGTTTGTGTGGGGGGTAGGGGAAAATATATGGAACGACTTCAATATGTG ATACGTCGGCAGGTGTATTTCTTCCTTGGCAGTTTGCCCCTAACGGCTTG TTGCCTGAGCGTCCGACAAGCGATGGGCAGCAAACTTCTGAATGTACGAA GGTGTAGTCTTAAAAGCCCCCCCCTTCCTCGCCCCCCCCTCTCCTGACGA CTCGCAATGTAGTAAAGTCATAATCGACGGTCACTCTCTTTCTACCCGTG TGCATGTCGCGTCGATATTCGTTGATGAGTGCATCATGTTGAGGGATTGA ACTGCTGTACGTGCACCCATGTAGGCTTTCTGAGGCTTGTTGTACGGCAG GATATTCTTGTCGATTCGTGTATGTCGGTGCCCTCCTGCCGTCTGTTGTT CGGATGCACACATGTGTGCATGGTGTTTGTTTGCAGTGCCTGGAAGCCTT CGAAGGGTTCAACATCTACGAGGTGCATCTGTGCCCAGTGTGTCGCCAGG ACTACAAGAGCGTCGATCCCTCCCGTCACCAT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig700:28935..33216-

>mRNA_P-littoralis_Contig700.5.1 ID=mRNA_P-littoralis_Contig700.5.1|Name=mRNA_P-littoralis_Contig700.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1713bp|location=Sequence derived from alignment at P-littoralis_Contig700:28935..33216- (Pylaiella littoralis U1_48)
CACAATAAAAGCCAACAAAAGGCTGAAGGAAGCTCTAGCGGCCAACTAGC
AGGTGGATCGTCTCGAACCTTGCTGCGTCGTCGTCGCCCACTCCATCATC
GAACTCTTGACGAGGTATCGGAGAGGGTTCTTGACGCGGCGGCTCTCCAA
GACAGCCTCATAGGACGCATGAAGCTCGACCTTGGAGTTCAAGCGCCTCG
GGCCGTCGTAGTTCTTGGCGGGAATGGCGCGGAGAGAGGCGGGACACGAA
GAAGACGAGGGGGCGGCGTAGTGGCCAAAGGCAGACAACCGGACGAAAAC
GCTGACAACCCTCCCGTATCAACGGCGGCGGCCATCGGGCGAACTGGCGG
TACTTCCACCGCCTGGACTTGTCAATCTTGCTCCGCAGACAACTGTACCA
ACGGTGATGTCACCAGAAGCGACGGACACAATAGCAGCAGTAGCGGTGGG
AACGCCTGCTACCTGTGCTGCCAACCTAGACAACAGGAGCGGCGACTATC
TGCTGTCGAAACAGAGTACAGGAGTTTTGATGATAGAGAGGGAAATGGAA
CCGGCGCCGGTGGAGGTTATTCCGAGAAGGGCCAAGAGGAGAAGCACCAC
CACCAGCGAAGAGTAACCGTCACCTTGGCACAGATTCGTGGTTTGGAAGA
ACCGCCAGAGCCGACGCTTACCCCAGGGGAATGGAGCATCGTCGAAGCCA
AGGCGTTGGCGAGGGGGGACGAGGCGACCCCGTGCCCGATCTGCCGGGAG
ACGTTTCGTGGCGAGAGCCAAATAATCCTGAGCTGCAGTCACGTGTTCCA
CAAAGCGTGCCTGTCGGCCTTCGAGAAGTTTCTTCGGGTGCAGGAGCGGA
GCTGCCCCTTGTGCCGAAAAGTAGACTACCAGAAGAGGGCAACGAAACAA
GGAGCCGTGGCGTGGCGCCAGCAGTGCGCGCGGCGACTGCAATGCGCCTA
CCGACGACACAGAGCACGGCGAGAGTACCGCGTTCTTCTAAGGAGGCACT
ACAATGCGGGGTTCGGGAACACCCTGAGGCGGCGGGAGTTCCTGAGCGGG
CAGGCGGCGAAGACAGCGGGGAAGCTGGCGGTCGCGCTGGAGGACCGGGG
GGATGCGATAGACAGGCTTTTCGGCGAGTTTGATCGCAGCCTGGCGTTCA
GCAGGGAGGTTTTTGGGCCCGTGTCAGCAGCTACATCATCATCACCGCCC
GGCTCGTTAGAAGGGAGAAACAACGGCCGCCACCACGAGAATAACAACCA
CAACAACGACAGCCACCTCCAACACCCACTCCCGTCTTCCTCGAGAGACA
GCAACGGTAGCCCTCAGTCGACGGTTTTATTCTCCGAAACGTCCGAAAAG
GTGCGCGCCAGAACGTGGAAGGAGGCGTGGATCAAAGCTGGGGACAGGGG
GGAGGACGAGTGCCCCATTTGTATGTGTTCCATGGAGCCAGTTTCCGCCG
GCAACGGCGACGGCAATGGCGACGGCGACAACGAGGGCGGCAGCAACAGG
AACGTAAGCGCTGGCGAGCGGCGGCGGCAGCGGCGGCAGCGATGTCAGCG
ACGAGGGGACGGCGGGAAACAACGGGATAGGTTGCTGCTCAGCTGCAGTC
ATGTCTTCCACAAGGCGTGCCTGGAAGCCTTCGAAGGGTTCAACATCTAC
GAGGTGCATCTGTGCCCAGTGTGTCGCCAGGACTACAAGAGCGTCGATCC
CTCCCGTCACCAT
back to top