mRNA_P-littoralis_Contig70.74.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig70.74.1
Unique NamemRNA_P-littoralis_Contig70.74.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig70.74.1 vs. uniprot
Match: A0A6H5JL16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL16_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 9.310e-38
Identity = 67/96 (69.79%), Postives = 79/96 (82.29%), Query Frame = 1
Query:  292 APLCSFRCSRSKEAKVLGYHKALRALRRIVQKAGGDPNMVGLHSLRIGAATTLAAGGQIPDRIFQRKGRWKEGSRTFKLYTRNSLEDIEILSRKLA 579
            APLCS RC RSK  KV GY KAL ALR+IV++AGGDP  VGLHSLRIGA TTLAAGG +PDR  QR+GRWKEGS T K+ TRN++ D++++SRKLA
Sbjct:   11 APLCSCRCRRSKTIKVWGYSKALSALRQIVEEAGGDPKQVGLHSLRIGATTTLAAGGDVPDRTTQREGRWKEGSNTLKICTRNNMVDVDMVSRKLA 106          
BLAST of mRNA_P-littoralis_Contig70.74.1 vs. uniprot
Match: A0A6H5K718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K718_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 1.110e-37
Identity = 81/157 (51.59%), Postives = 101/157 (64.33%), Query Frame = 1
Query:  136 ITIARRGVVDDPSTAATCRAPVDTIARSFVSVVDLVEQRRLRGEFMRFIAC------SAPLCSFRCSRSKEAKVLGYHKALRALRRIVQKAGGDPNMVGLHSLRIGAATTLAAGGQIPDRIFQRKGRWKEGSRTFKLYTRNSLEDIEILSRKLARGR 588
            + +  RG   D S    C   V  +AR   S +            +  +AC       APLCSFRC RSK  KV GY KAL A  +IV+KAGG+P  VGLHSLRIGAATTLAAGG +PDRI Q +GRWKEGS TFK+YTRN++ D++++SRKLA+G+
Sbjct:  137 VRVRFRGHKGDQSEKGACVTRVREVARGASSQIGA--GGGAVAVLVELMACHLALPEDAPLCSFRCRRSKTIKVWGYSKALSA--QIVEKAGGNPKQVGLHSLRIGAATTLAAGGDVPDRIIQGEGRWKEGSGTFKIYTRNNMVDVDMVSRKLAKGK 289          
BLAST of mRNA_P-littoralis_Contig70.74.1 vs. uniprot
Match: A0A6H5KTP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP7_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 1.120e-37
Identity = 84/157 (53.50%), Postives = 101/157 (64.33%), Query Frame = 1
Query:  136 ITIARRGVVDDPSTAATCRAPVDTIARSFVSVVDLVEQRRLRGEFMRFIAC------SAPLCSFRCSRSKEAKVLGYHKALRALRRIVQKAGGDPNMVGLHSLRIGAATTLAAGGQIPDRIFQRKGRWKEGSRTFKLYTRNSLEDIEILSRKLARGR 588
            + +  RG   D S    C   V  +AR   S +            +  +AC       APLCSFRC RSK  KV GY KAL ALR+IV KAGGDP  VGLHSLRIGAATTLAAGG +PDRI Q +GRWKE S TFK+YTRN++ DI+++SRKLA+G+
Sbjct:  754 VRVRFRGHKGDQSEKGACVTRVREVARGASSQIGA--GGGAVAVLVELMACHLALPEDAPLCSFRCRRSKTIKVWGYPKALSALRQIVDKAGGDPKQVGLHSLRIGAATTLAAGGDVPDRIIQSEGRWKEASGTFKIYTRNNMVDIDMVSRKLAKGK 908          
BLAST of mRNA_P-littoralis_Contig70.74.1 vs. uniprot
Match: A0A6H5KCI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.490e-18
Identity = 52/96 (54.17%), Postives = 69/96 (71.88%), Query Frame = 1
Query:  289 SAPLCSFRCSRSKEAKVLGYHKALRALRRIVQKAGGDPNMVGLHSLRIGAATTLAAGGQIPDRIFQRKGRWKEGSRTFKLYTRNSLEDIEILSRKL 576
            SAPL S+R    +E KVL Y +ALRALR IV+++G +P    LHSLRIG A+TLAAGG + +R+ QR+GRWK  S  +K+YT N+ ED + +SR L
Sbjct:  348 SAPLSSYRSG--QEVKVLKYDQALRALREIVERSGRNPKDFALHSLRIGGASTLAAGGAVSERVIQREGRWK--SDAYKVYTVNNSEDSQRVSRTL 439          
BLAST of mRNA_P-littoralis_Contig70.74.1 vs. uniprot
Match: A0A6H5KQV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV6_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.700e-17
Identity = 51/84 (60.71%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    1 AIEVTSEVADSLLRCCDFRPSAFAPRGAVGI-IPMATHLRLMAEAFITIARRGVVDDPSTAATCRAPVDTIARSFVSVVDLVEQ 249
            + EVT  VAD LL    F P AFAPRGA G  IP+ATHL LMA AFITIARRG+VDDP  AA  +A VD +  SF +V+D VE+
Sbjct:  103 SFEVTDAVADMLLNFRGFDPVAFAPRGAGGERIPIATHLSLMAGAFITIARRGIVDDPRLAAAVKARVDRVEASFQAVIDDVER 186          
BLAST of mRNA_P-littoralis_Contig70.74.1 vs. uniprot
Match: A0A6H5JW95_9PHAE (C3H1-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW95_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.110e-16
Identity = 51/84 (60.71%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    1 AIEVTSEVADSLLRCCDFRPSAFAPRGAVGI-IPMATHLRLMAEAFITIARRGVVDDPSTAATCRAPVDTIARSFVSVVDLVEQ 249
            + EVT  VAD LL    F P AFAPRGA G  IP+ATHL LMA AFITIARRG+VDDP  AA  +A VD +  SF +V+D VE+
Sbjct:  225 SFEVTDAVADMLLNFRGFDPVAFAPRGAGGERIPIATHLSLMAGAFITIARRGIVDDPRLAAAVKARVDRVEASFQAVIDDVER 308          
BLAST of mRNA_P-littoralis_Contig70.74.1 vs. uniprot
Match: A0A6H5K1N1_9PHAE (C3H1-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N1_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 4.890e-16
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    1 AIEVTSEVADSLLRCCDFRPSAFAPRGAVGI-IPMATHLRLMAEAFITIARRGVVDDPSTAATCRAPVDTIARSFVSVVDLVEQ 249
            + EVT EVAD LL    F P+AFAPRGA G  IP+ATHL LMA AFITIARRG+VD+P  AA  RA VD +  SF + +  VE+
Sbjct:  199 SFEVTDEVADMLLNFRGFDPAAFAPRGAGGERIPIATHLALMAGAFITIARRGIVDEPRLAAASRAQVDRVEASFQAAIADVER 282          
BLAST of mRNA_P-littoralis_Contig70.74.1 vs. uniprot
Match: A0A6H5KC28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC28_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.140e-14
Identity = 47/84 (55.95%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 AIEVTSEVADSLLRCCDFRPSAFAPRGAVGI-IPMATHLRLMAEAFITIARRGVVDDPSTAATCRAPVDTIARSFVSVVDLVEQ 249
            +IEVT EVA  LL    F P+AFAPRGA G  IP+ATH  LMA AFITIARRG+ D+P  AA  +A VD +  SF + +  VE+
Sbjct:  199 SIEVTDEVAGMLLNFRGFDPAAFAPRGAGGERIPIATHFGLMARAFITIARRGIADEPRLAAASKAQVDRVEASFQAAIADVER 282          
BLAST of mRNA_P-littoralis_Contig70.74.1 vs. uniprot
Match: A0A6H5K1K7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K7_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.060e-13
Identity = 47/83 (56.63%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    4 IEVTSEVADSLLRCCDFRPSAFAPRGAVGI-IPMATHLRLMAEAFITIARRGVVDDPSTAATCRAPVDTIARSFVSVVDLVEQ 249
            IEVT EVA  LL    F P+AFAPRGA G  IP+ATH  LMA AFITIARRG+ D+P  AA  +A VD    SF + +  VE+
Sbjct:  255 IEVTDEVAGMLLNFRGFDPAAFAPRGAGGERIPIATHFGLMAGAFITIARRGIADEPRLAAASKAQVDRFEASFQAAIADVER 337          
BLAST of mRNA_P-littoralis_Contig70.74.1 vs. uniprot
Match: A0A6H5KF68_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF68_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 8.460e-13
Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    1 AIEVTSEVADSLLRCCDFRPSAFAPRGAVGI-IPMATHLRLMAEAFITIARRGVVDDPSTAATCRAPVDTIARSFVSVVDLVEQ 249
            +IEVT EV   LL    F P+AFAPRGA G   P+ATH  LMA  FITIARRG+ D+P  AA  +A VD +  SF + +  VE+
Sbjct:   55 SIEVTDEVVGMLLNFRGFDPAAFAPRGAGGERFPIATHFGLMAGVFITIARRGIADEPRLAAASKAQVDRVEASFQAAIADVER 138          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig70.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JL16_9PHAE9.310e-3869.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K718_9PHAE1.110e-3751.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTP7_9PHAE1.120e-3753.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCI7_9PHAE2.490e-1854.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQV6_9PHAE2.700e-1760.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW95_9PHAE2.110e-1660.71C3H1-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5K1N1_9PHAE4.890e-1659.52C3H1-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KC28_9PHAE2.140e-1455.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1K7_9PHAE1.060e-1356.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KF68_9PHAE8.460e-1352.38C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig70contigP-littoralis_Contig70:372664..373669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog400682.PAC_15707357
Model size770
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000414
EggNOG OGs2E046@1|root,2S7JV@2759|Eukaryota,3A8EH@33154|Opisthokonta,3BUSG@33208|Metazoa
Cds size498
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791464.704666-UTR-P-littoralis_Contig70:372663..3727621680791464.704666-UTR-P-littoralis_Contig70:372663..372762Pylaiella littoralis U1_48UTRP-littoralis_Contig70 372664..372762 +
1680791464.74426-UTR-P-littoralis_Contig70:373496..3736691680791464.74426-UTR-P-littoralis_Contig70:373496..373669Pylaiella littoralis U1_48UTRP-littoralis_Contig70 373497..373669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791464.7204146-CDS-P-littoralis_Contig70:372762..3729511680791464.7204146-CDS-P-littoralis_Contig70:372762..372951Pylaiella littoralis U1_48CDSP-littoralis_Contig70 372763..372951 +
1680791464.7303526-CDS-P-littoralis_Contig70:373187..3734961680791464.7303526-CDS-P-littoralis_Contig70:373187..373496Pylaiella littoralis U1_48CDSP-littoralis_Contig70 373188..373496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig70.74.1prot_P-littoralis_Contig70.74.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig70 372763..373496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig70.74.1

>prot_P-littoralis_Contig70.74.1 ID=prot_P-littoralis_Contig70.74.1|Name=mRNA_P-littoralis_Contig70.74.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=166bp
MATHLRLMAEAFITIARRGVVDDPSTAATCRAPVDTIARSFVSVVDLVEQ
RRLRGEFMRFIACSAPLCSFRCSRSKEAKVLGYHKALRALRRIVQKAGGD
PNMVGLHSLRIGAATTLAAGGQIPDRIFQRKGRWKEGSRTFKLYTRNSLE
DIEILSRKLARGRVL*
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mRNA from alignment at P-littoralis_Contig70:372664..373669+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig70.74.1 ID=mRNA_P-littoralis_Contig70.74.1|Name=mRNA_P-littoralis_Contig70.74.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1006bp|location=Sequence derived from alignment at P-littoralis_Contig70:372664..373669+ (Pylaiella littoralis U1_48)
GCCATCGAGGTAACGTCGGAGGTCGCCGACTCGCTGCTGCGGTGCTGCGA CTTCCGCCCCTCCGCCTTCGCCCCGCGCGGCGCAGTCGGCATTATCCCCA TGGCGACACACCTTCGCCTGATGGCGGAGGCCTTCATCACAATCGCGCGA AGAGGGGTGGTCGACGACCCCTCGACTGCCGCGACGTGCCGGGCACCAGT GGACACGATCGCGCGCTCCTTCGTCAGCGTCGTCGACCTCGTGGAACAGC GTCGGCTCCGGGGGGAATTCATGCGGTTCATTGCTTGCGTAGAGACGATG TCACGTTCCTTGCCGAGGAAAAAGCACTGCCACCGTTGCACTGGCACAAG GCCACTACGGTGCGGGTGAGGTTCCAAGGGCATAAAGGGGATCAAGCTGA ACAGGGTTCATACATCGTTCGGGTACGGGACGGAGCACATGGTAGACGCT CTTCAGTGGACGCAGGCGGCGGGGCCGTTGCGGTTTTGGTAGAGTTTATG ACTTGTCATCTCTCATTGCCTGAGAGCGCCCCCCTGTGTTCATTCCGTTG CAGTAGAAGCAAGGAGGCGAAAGTGTTGGGATACCACAAGGCGTTAAGAG CCTTGCGCCGGATAGTCCAGAAGGCAGGGGGGGACCCCAACATGGTAGGA TTGCATTCGCTTAGGATCGGGGCGGCCACTACGCTAGCCGCTGGGGGACA GATTCCCGACAGGATTTTCCAGAGAAAAGGTAGATGGAAGGAAGGGTCGC GTACGTTCAAGCTGTATACACGGAATAGCTTGGAAGACATAGAGATCTTA TCCCGTAAACTAGCGAGAGGAAGAGTACTCTAATGTAGGTTTATAATGAG CGCCTGTTCTTTTATGGCCAAATTCTTATTTTTCAAAAAGTTTGAGGCTG GATTTTTTCTTATCTGCCAGTTTCTTACGTGGTGGCCGCATCTGTGATTT TCTCAAAAACGACATCATCATCACCATCACCATAAAAACATGTACCGATG ATCCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig70:372664..373669+

>mRNA_P-littoralis_Contig70.74.1 ID=mRNA_P-littoralis_Contig70.74.1|Name=mRNA_P-littoralis_Contig70.74.1|organism=Pylaiella littoralis U1_48|type=CDS|length=498bp|location=Sequence derived from alignment at P-littoralis_Contig70:372664..373669+ (Pylaiella littoralis U1_48)
ATGGCGACACACCTTCGCCTGATGGCGGAGGCCTTCATCACAATCGCGCG
AAGAGGGGTGGTCGACGACCCCTCGACTGCCGCGACGTGCCGGGCACCAG
TGGACACGATCGCGCGCTCCTTCGTCAGCGTCGTCGACCTCGTGGAACAG
CGTCGGCTCCGGGGGGAATTCATGCGGTTCATTGCTTGCAGCGCCCCCCT
GTGTTCATTCCGTTGCAGTAGAAGCAAGGAGGCGAAAGTGTTGGGATACC
ACAAGGCGTTAAGAGCCTTGCGCCGGATAGTCCAGAAGGCAGGGGGGGAC
CCCAACATGGTAGGATTGCATTCGCTTAGGATCGGGGCGGCCACTACGCT
AGCCGCTGGGGGACAGATTCCCGACAGGATTTTCCAGAGAAAAGGTAGAT
GGAAGGAAGGGTCGCGTACGTTCAAGCTGTATACACGGAATAGCTTGGAA
GACATAGAGATCTTATCCCGTAAACTAGCGAGAGGAAGAGTACTCTAA
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