mRNA_P-littoralis_Contig7.170.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.170.1
Unique NamemRNA_P-littoralis_Contig7.170.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig7.170.1 vs. uniprot
Match: A0A6H5JJM4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM4_9PHAE)

HSP 1 Score: 444 bits (1141), Expect = 1.740e-147
Identity = 235/330 (71.21%), Postives = 239/330 (72.42%), Query Frame = 1
Query:    1 PRTAAVIMTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKT---------------KIFLPKTEAQKKMKGRKFGTGLDKKKYPVGTRVTSGSPLLGLNKGGEQMLKEMG--------------------------------------------------------------------RQRCCMERVFSDLGAFKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPRALSGVPLEHIRAWSRGVAIH*SVRRRDGGL 741
            PRTAAVIMTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKT               KIFLPKTEAQKKMKGRKFGTGLDKKKYPVGTRVTSGSPLLGLNKGGEQMLKEMG                                                                    RQRCCMERVFSDLGAFKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPRALSGVPLEHIRAWSR V ++  +   D G+
Sbjct:  494 PRTAAVIMTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDKKKYPVGTRVTSGSPLLGLNKGGEQMLKEMGLWRLDGERAKGLVKCCNKCKADNAASRQAIAAFNKGGEQRERVLEQARREQQSSPAEGPAAEGRAAARRQRCCMERVFSDLGAFKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPRALSGVPLEHIRAWSRVVWLY--IEAYDDGM 821          
BLAST of mRNA_P-littoralis_Contig7.170.1 vs. uniprot
Match: A0A6H5K550_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K550_9PHAE)

HSP 1 Score: 342 bits (876), Expect = 6.990e-108
Identity = 184/288 (63.89%), Postives = 192/288 (66.67%), Query Frame = 1
Query:    1 PRTAAVIMTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKT---------------KIFLPKTEAQKKMKGRKFGTGLDKKKYPVGTRVTSGSPLLGLNKGGEQMLKEMG--------------------------RQ------------------------------------------RCCMERVFSDLGAFKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCE 615
            PRTA VIMTVGKQ DGYWTSDRMCAQLPAA+A FEL+NGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEK ALRVFEDDNG+                KIFLPKT  QKK+KGRK GTGLDKK+YPVGT+VT GSPLLGL+KGGEQMLKEMG                          RQ                                          RCCMERVFSDL AFKAQLNKV+QIFK AGHVCIFLPKYHPELNAIE YWGYVKH LRLHCE
Sbjct:  546 PRTAVVIMTVGKQQDGYWTSDRMCAQLPAALATFELTNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKTALRVFEDDNGRMVHPTFQDGDTLLTDKKIFLPKTPEQKKIKGRKHGTGLDKKQYPVGTKVTHGSPLLGLSKGGEQMLKEMGLWRLDGERAKGLVKCCNKCKAENAASRQAIAAFNKGGEERERVLEQARXXXXXXXXXXXXXXXXXXXXXXRCCMERVFSDLRAFKAQLNKVEQIFKKAGHVCIFLPKYHPELNAIELYWGYVKHYLRLHCE 833          
BLAST of mRNA_P-littoralis_Contig7.170.1 vs. uniprot
Match: A0A6H5JD27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD27_9PHAE)

HSP 1 Score: 335 bits (858), Expect = 5.810e-107
Identity = 189/313 (60.38%), Postives = 207/313 (66.13%), Query Frame = 1
Query:    1 PRTAAVIMTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKT---------------KIFLPKTEAQKKMKGRKFGTGLDKKKYPVGTRVTSGSPLLGLNKGGEQMLKEMGRQRC-------------CM--------------------ERVF-----------------SDLGAFK-AQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPRALSGVPLEHIRAWSRGVAIH*SVRRRDGGL 741
            P+TAAVIM VG+QHDGYWTSD MCAQLPA IAM EL++GPHRQGVFIFDNSTGHN YD DALLAH I+LAPGGEK ALRVFED +GK                KIFLPKTE QKK K RK GT LDK K+PVGT+V   SPLLGLNKGGEQML+EMG  R              C                     ERV                  S  G +K A LNKV+QIFK+AGHVCIFLPKYHPELNAIERYWG +KHVLRLHCE SLTHML+IL  A+SGVPL+HIRAWSR V ++  V   D GL
Sbjct:  361 PQTAAVIMPVGQQHDGYWTSDDMCAQLPAIIAMAELTSGPHRQGVFIFDNSTGHNPYDADALLAHNINLAPGGEKVALRVFEDVDGKKVYPTFQLGDTLLTDRKIFLPKTEEQKKNKKRKSGTALDKDKFPVGTKVVLRSPLLGLNKGGEQMLREMGLWRLRGEKRGLVKGCNKCKADNAAARQAIAAFNKGGEERERVLEQAWWEQQKFFHRGSRGSGRGCWKEAALNKVEQIFKEAGHVCIFLPKYHPELNAIERYWGSIKHVLRLHCEISLTHMLEILRGAMSGVPLDHIRAWSRVVWLY--VEAYDDGL 671          
BLAST of mRNA_P-littoralis_Contig7.170.1 vs. uniprot
Match: D7FZS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS5_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 4.780e-78
Identity = 122/159 (76.73%), Postives = 129/159 (81.13%), Query Frame = 1
Query:   22 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKT---------------KIFLPKTEAQKKMKGRKFGTGLDKKKYPVGTRVTSGSPLLGLNKGGEQMLKEMGRQRCCMERV 453
            MTVGKQHDGYWTSDRMCAQLPAAIA FEL++GPHRQGV IFDNSTGHN YDDDALLAHK+SLAPGGEK ALRVFEDDNG+T               KIFLPKTEAQ+K KGRKFGTGLDKK+YP GT+ T GSPLLGLNKGGEQMLK MG  R   ER 
Sbjct:    1 MTVGKQHDGYWTSDRMCAQLPAAIATFELTHGPHRQGVSIFDNSTGHNTYDDDALLAHKMSLAPGGEKTALRVFEDDNGRTVHPTPQLGGTLLTDKKIFLPKTEAQEKTKGRKFGTGLDKKQYPFGTKATPGSPLLGLNKGGEQMLKGMGLWRLDGERA 159          
BLAST of mRNA_P-littoralis_Contig7.170.1 vs. uniprot
Match: A0A6H5L669_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L669_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 1.550e-69
Identity = 142/347 (40.92%), Postives = 180/347 (51.87%), Query Frame = 1
Query:    1 PRTAAVIMTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGK---------------TKIFLPKTE----AQKKM------------KGRKFGTGLDKKKYPVGTRVTSGSP-LLGLNKGGEQMLKEMG--------------------------------------------------------------------RQRCCMERVFSDLGAFKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPRALSGVPLEHIRAWSRGVAIH*SVRRRDGGL 741
            P TAAVIMTVG+  DGYW   RM  Q+P  IA+ EL++ PHRQ V +FDNSTGH+A+   AL+   ++L PGG + ALR FEDD G                T +F PKTE    A+KK             K +K G  L K K     + T  +  L+GL KGG+Q+L EMG                                                                    R+RCC+ RV S+L AF+ +LN V+++FK  GH+C+FLPKYHPELN+IERYWGY+KH+LRLHCEYSL HML++LP ALSGVP   IRAWSR   ++  +   D GL
Sbjct:  353 PSTAAVIMTVGQHQDGYWNCARMLEQIPGLIAIHELTSEPHRQLVMVFDNSTGHSAFGAGALVGEHVALRPGGAQGALRNFEDDEGNPVHTTFRVGDKLRFTTNVFAPKTEEELEAEKKAAEEAEEKGLPVKKSKKNGKNLGKFKKDDEVKATGPTAVLIGLPKGGKQLLMEMGLWEGEPTLRVHECSACRAEKAATRQAITAFNRGGEGRQQVVDNTGQGEEDGGEDXXXXXXXXXXXXXKRRRCCVVRVLSELKAFREELNMVEKLFKAHGHLCMFLPKYHPELNSIERYWGYIKHLLRLHCEYSLRHMLQVLPGALSGVPARFIRAWSRVTWLY--IEAYDEGL 697          
BLAST of mRNA_P-littoralis_Contig7.170.1 vs. uniprot
Match: A0A6H5JT56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT56_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 7.750e-69
Identity = 140/337 (41.54%), Postives = 174/337 (51.63%), Query Frame = 1
Query:    1 PRTAAVIMTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGK---------------TKIFLPKT---------EAQKK---MKGRKFGTGLDKKKYPVGTRV-TSG--SPLLGLNKGGEQMLKEMG---------------------------------------------------------------------------RQRCCMERVFSDLGAFKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPRALSGVPLEHIRAWSR 696
            PRT AVIMTVG+  DGYWT+DRMC Q+P  IA+ EL++ PHR  V +FDNSTGH AY++ AL+A  I   PGG +  L  F DD G                T ++  KT         EA KK    K  K G+ L    +  G +V T+G  S L+G  KGG+Q+L EMG                                                                           R+RCC+ +VF++L AFK +LNK++++FK AGH+CIFL KYHPELNAIERYWGY KH+LRL CEYSL HML+ILP ALSGVPL  +R WSR
Sbjct:   84 PRTGAVIMTVGQNSDGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDDFLDDQGNLVHATFREGDTVLFDTHVYAAKTPEQLEEEEREAAKKDPKYKRPKIGSSLGD--FNAGEKVRTTGRTSGLIGQAKGGQQLLMEMGLWDVPGQAPIRVLECKACKEERKAIKAAITAFNRGGEARQQALDDAAREDQDGGGDGASPEEGTEGGAAGNRVGMRRRCCIRKVFAELKAFKMELNKIEKMFKKAGHICIFLAKYHPELNAIERYWGYAKHILRLSCEYSLPHMLEILPGALSGVPLGFVRGWSR 418          
BLAST of mRNA_P-littoralis_Contig7.170.1 vs. uniprot
Match: A0A6H5KE66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE66_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 1.690e-67
Identity = 129/249 (51.81%), Postives = 145/249 (58.23%), Query Frame = 1
Query:    1 PRTAAVIMTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTKIFLPKTEAQKKMKGRKFGTGLDKKKYPVGTRVTSGSPLLGLNKGGEQMLKEMG----------------------------------------------------------------------RQRCCMERVFSDLGAFKAQLNKVQQIFKDAGHVCIFL 537
            P TAAVIMTVG+QHD YWTSDRMCA+LPA IAM EL++GPHRQ V IFDNSTGHNAY +DALLAHKI++APGGEK ALRVFEDDNG T         +KK K RK GT LDKKK+ VGT+V +GSPLLG+NKG EQML+EMG                                                                      RQRCC  RVFSDL A K QLNKV++IFK AGH   +L
Sbjct:  353 PWTAAVIMTVGQQHDRYWTSDRMCARLPAIIAMVELTSGPHRQDVLIFDNSTGHNAYGEDALLAHKINMAPGGEKGALRVFEDDNGNT--------VEKKQKERKNGTALDKKKFSVGTKVVAGSPLLGVNKGAEQMLREMGLWRLGGERKEGLLQICKKCKANNAASRQEITAFNKRGGGEGEGSRASAAGAAEFFHRGAHYSGRGGWNATRQRCCAYRVFSDLRALKEQLNKVEEIFKKAGHAVAWL 593          
BLAST of mRNA_P-littoralis_Contig7.170.1 vs. uniprot
Match: A0A6H5K659_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K659_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 2.090e-67
Identity = 141/335 (42.09%), Postives = 172/335 (51.34%), Query Frame = 1
Query:    1 PRTAAVIMTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGK---------------TKIFLPKT---------EAQKK---MKGRKFGTGLDKKKYPVGTRVTSG-SPLLGLNKGGEQMLKEMG---------------------------------------------------------------------------RQRCCMERVFSDLGAFKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPRALSGVPLEHIRAWSR 696
            PRT AVIMTVG+  DGYWT+DRMC Q+P  IA+ EL++ PHR  V +FDNSTGH AY++ AL+A  I   PGG +  L  F DD G                T ++  KT         EA KK    K  KFG+ L   K     R T   S L+G  KGG+Q+L EMG                                                                           R+RCC+ +VF++L AFK +LNK++++FK AGH+CIFL KYHPELNAIERYWGYVKH+LRL CEYSL HML+ILP ALSGVPL  +R WSR
Sbjct:  517 PRTGAVIMTVGQNSDGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDDFLDDQGNLVHATFREGDTVLFDTHVYAAKTPEQLEEEEREAAKKDPKYKRPKFGSSLGDFKAGEKVRTTGRTSGLIGQAKGGQQLLMEMGLWDVPGQAPIRVLECKACKEERKAIKAAITAFNRGGEARQQALDDAAREDQDGGGDGASPEEGTEGGAAGNRVGMRRRCCIRKVFAELKAFKMELNKIEKMFKKAGHICIFLAKYHPELNAIERYWGYVKHLLRLSCEYSLPHMLEILPGALSGVPLGFVRGWSR 851          
BLAST of mRNA_P-littoralis_Contig7.170.1 vs. uniprot
Match: A0A6H5JJ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ42_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 1.210e-66
Identity = 137/334 (41.02%), Postives = 172/334 (51.50%), Query Frame = 1
Query:    1 PRTAAVIMTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNG---------------KTKIFLPKTEAQKKM---------KGRKFGTGLDKKKYPVGTRVTSG---SPLLGLNKGGEQMLKEMG---------------------------------------------------------------------------RQRCCMERVFSDLGAFKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPRALSGVPLEHIRAWSR 696
            P T AVIMTVG+  DG+W ++RMC Q+P  IA+ EL++ PHR  V +FDNSTGH AY+  AL+A  I+  PGG +A L  F DD G               K +++  KT  Q K          K +K   G +  ++  GT + +    S L+G  KGG+QML EMG                                                                           R RCC+ RVF++L AFK +LNK++++FK AGH+CIFL KYHPELNAIERYWGYVKH+LRLHCEYSL HMLKILP ALSGVPL  +R WSR
Sbjct:  927 PSTGAVIMTVGQNQDGFWNNERMCKQIPGLIAIHELTSEPHRPLVMVFDNSTGHAAYETSALVASHINKGPGGGQAILDDFLDDEGNLVRTTFRAGDKLLFKAQVYAAKTPEQLKAEEEELKRNPKYKKPRNGDNLGEFAAGTEIRASGRTSRLIGQAKGGQQMLMEMGLWDVPGEDPVRVLECKACKGERAATRAAITSFNRGGEGRQQALDDAARRDETDGESAGSPGEGAAGGAAGNHVGTRSRCCIGRVFAELKAFKMELNKIEKMFKKAGHICIFLAKYHPELNAIERYWGYVKHLLRLHCEYSLKHMLKILPGALSGVPLRFMRGWSR 1260          
BLAST of mRNA_P-littoralis_Contig7.170.1 vs. uniprot
Match: A0A6H5K344_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K344_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 4.050e-54
Identity = 118/319 (36.99%), Postives = 158/319 (49.53%), Query Frame = 1
Query:    4 RTAAVIMTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKT---------------KIFLPKTEAQ---KKMKGRKFGTGLDKKKYPVGT---RVTSGSPLLGLNKGGEQMLKEMG-------------------------------------------------------------------RQRCCMERVFSDLGAFKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPRALSGVPLEHIRAWSR 696
            R+A +I+ VGK  DGYW S+R+C QL A  A FE+S  P RQ + +FDNSTGHNAY  DAL A  I  +PGGE+   R FE  NG+T                 F  KTEA+   KK  G++ G       +P+GT   R TS   L+G+ KG +++L++MG                                                                    +RCC +R+ S++ AFK Q+N+V+++F+ AGH CIFL KYHPELNAIER+WGY K + R  C+YS+  +L  LP  LS V L   R W+R
Sbjct:  193 RSARIILRVGKNLDGYWDSNRLCVQLEAIFAAFEISREPGRQMLAVFDNSTGHNAYSPDALRAQNIRASPGGEQIPPRNFEY-NGRTIYTTFREGDVLCFRSSPFARKTEAEAVAKKRHGKRLGV------FPIGTVVKRGTSSEKLIGVAKGMKEILEDMGLYKLASETKAPPLLCQRCKDEAKAKRDKSTMYNKGGESRQQALEGEGDSDDSDXXSEEGGARDAARTSRRCCCQRIISEVKAFKEQMNRVEELFEAAGHACIFLAKYHPELNAIERFWGYTKSIERRVCDYSVLSLLARLPMTLSTVSLSLCRKWAR 504          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJM4_9PHAE1.740e-14771.21Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K550_9PHAE6.990e-10863.89Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD27_9PHAE5.810e-10760.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZS5_ECTSI4.780e-7876.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L669_9PHAE1.550e-6940.92Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT56_9PHAE7.750e-6941.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE66_9PHAE1.690e-6751.81Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K659_9PHAE2.090e-6742.09Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ42_9PHAE1.210e-6641.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K344_9PHAE4.050e-5436.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:696156..697185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZS5
Model size781
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.91e-79
EggNOG OGs2D16T@1|root,2SGXK@2759|Eukaryota
Cds size693
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791455.002013-UTR-P-littoralis_Contig7:696155..6961761680791455.002013-UTR-P-littoralis_Contig7:696155..696176Pylaiella littoralis U1_48UTRP-littoralis_Contig7 696156..696176 +
1680791455.0701742-UTR-P-littoralis_Contig7:697118..6971851680791455.0701742-UTR-P-littoralis_Contig7:697118..697185Pylaiella littoralis U1_48UTRP-littoralis_Contig7 697119..697185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791455.021912-CDS-P-littoralis_Contig7:696176..6964191680791455.021912-CDS-P-littoralis_Contig7:696176..696419Pylaiella littoralis U1_48CDSP-littoralis_Contig7 696177..696419 +
1680791455.0417051-CDS-P-littoralis_Contig7:696464..6966251680791455.0417051-CDS-P-littoralis_Contig7:696464..696625Pylaiella littoralis U1_48CDSP-littoralis_Contig7 696465..696625 +
1680791455.0527148-CDS-P-littoralis_Contig7:696829..6971181680791455.0527148-CDS-P-littoralis_Contig7:696829..697118Pylaiella littoralis U1_48CDSP-littoralis_Contig7 696830..697118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.170.1prot_P-littoralis_Contig7.170.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 696177..697118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.170.1

>prot_P-littoralis_Contig7.170.1 ID=prot_P-littoralis_Contig7.170.1|Name=mRNA_P-littoralis_Contig7.170.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=231bp
MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAY
DDDALLAHKISLAPGGEKAALRVFEDDNGKTKIFLPKTEAQKKMKGRKFG
TGLDKKKYPVGTRVTSGSPLLGLNKGGEQMLKEMGRQRCCMERVFSDLGA
FKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYS
LTHMLKILPRALSGVPLEHIRAWSRGVAIH*
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mRNA from alignment at P-littoralis_Contig7:696156..697185+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.170.1 ID=mRNA_P-littoralis_Contig7.170.1|Name=mRNA_P-littoralis_Contig7.170.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1030bp|location=Sequence derived from alignment at P-littoralis_Contig7:696156..697185+ (Pylaiella littoralis U1_48)
CCACGGACGGCTGCTGTCATCATGACTGTTGGGAAGCAGCATGATGGCTA CTGGACGAGCGACCGCATGTGCGCCCAACTACCGGCGGCTATCGCTATGT TCGAGCTGTCGAACGGGCCGCACCGCCAGGGTGTCTTCATCTTCGACAAT TCCACTGGGCACAACGCCTACGACGACGACGCGTTGCTGGCCCACAAGAT CAGCTTGGCGCCGGGTGGGGAGAAGGCCGCGCTCAGGGTGTTCGAGGATG ACAACGGGAAAACGGTACACCCTACATTTCAGGTTGGTGACACCCTGCTC ACCGACAAGAAGATATTCTTACCGAAGACAGAGGCGCAGAAGAAGATGAA AGGGCGCAAATTTGGAACGGGGCTTGACAAAAAGAAGTACCCCGTCGGAA CCAGAGTCACGTCTGGATCGCCGCTGCTCGGGCTCAACAAAGGAGGTGAG CAGATGCTCAAGGAGATGGGGTTGTGGCGGCTTGACGGCGAGAGGGCGAA GGGGCTCGTCAAGTGCTGCAACAAGTGCAAGGCCGACAACGCGGCCTCAC GGCAAGCGATCGCAGCATTCAACAAAGGCGGCGAGCAGCGTGAGAGGGTT CTAGAGCAAGCGCGGCGGGAGCAGCAGAGTTCTCCTGCCGAAGGCCCCGC GGCAGAGGGAAGGGCGGCCGCAAGGAGGCAGCGATGCTGCATGGAAAGGG TCTTCTCCGACCTGGGGGCTTTCAAGGCCCAGCTCAACAAAGTCCAGCAG ATCTTCAAGGACGCCGGTCACGTGTGCATCTTCCTTCCCAAGTACCACCC TGAGCTCAATGCCATTGAGCGGTACTGGGGATACGTCAAGCACGTCCTTC GGCTTCACTGCGAGTACTCCCTCACCCACATGCTCAAGATTCTGCCGAGG GCGTTGAGTGGGGTGCCTTTGGAACACATCCGCGCGTGGAGCAGGGGTGT GGCTATACATTGAAGCGTACGACGACGGGATGGTGGGCTACCTCAAGAAC CGCGAACTCAAGGAGTGGCACACGCACCGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig7:696156..697185+

>mRNA_P-littoralis_Contig7.170.1 ID=mRNA_P-littoralis_Contig7.170.1|Name=mRNA_P-littoralis_Contig7.170.1|organism=Pylaiella littoralis U1_48|type=CDS|length=693bp|location=Sequence derived from alignment at P-littoralis_Contig7:696156..697185+ (Pylaiella littoralis U1_48)
ATGACTGTTGGGAAGCAGCATGATGGCTACTGGACGAGCGACCGCATGTG
CGCCCAACTACCGGCGGCTATCGCTATGTTCGAGCTGTCGAACGGGCCGC
ACCGCCAGGGTGTCTTCATCTTCGACAATTCCACTGGGCACAACGCCTAC
GACGACGACGCGTTGCTGGCCCACAAGATCAGCTTGGCGCCGGGTGGGGA
GAAGGCCGCGCTCAGGGTGTTCGAGGATGACAACGGGAAAACGAAGATAT
TCTTACCGAAGACAGAGGCGCAGAAGAAGATGAAAGGGCGCAAATTTGGA
ACGGGGCTTGACAAAAAGAAGTACCCCGTCGGAACCAGAGTCACGTCTGG
ATCGCCGCTGCTCGGGCTCAACAAAGGAGGTGAGCAGATGCTCAAGGAGA
TGGGGAGGCAGCGATGCTGCATGGAAAGGGTCTTCTCCGACCTGGGGGCT
TTCAAGGCCCAGCTCAACAAAGTCCAGCAGATCTTCAAGGACGCCGGTCA
CGTGTGCATCTTCCTTCCCAAGTACCACCCTGAGCTCAATGCCATTGAGC
GGTACTGGGGATACGTCAAGCACGTCCTTCGGCTTCACTGCGAGTACTCC
CTCACCCACATGCTCAAGATTCTGCCGAGGGCGTTGAGTGGGGTGCCTTT
GGAACACATCCGCGCGTGGAGCAGGGGTGTGGCTATACATTGA
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