mRNA_P-littoralis_Contig1176.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1176.12.1
Unique NamemRNA_P-littoralis_Contig1176.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Match: D7FY49_ECTSI (Similar to collagen, partial n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY49_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 3.300e-27
Identity = 66/120 (55.00%), Postives = 86/120 (71.67%), Query Frame = 1
Query:    1 VDADTQIKVGTIISLGIVAGQELLDAAPEASTSFMVVTTDGLSNGGTLAAADAAREVGTILFAVGVGPYTSEDTLLEIAGDEDNIFSLDNFDELDVALEGILSSLSGTVPCPATDASITL 360
            VDAD +   GT I  GI  G+ELL A+P A+TSFM+VTTDG +       ADAAR  GTIL+AVGVG   S++ LL I GDE N+F +DNF+ELD+AL+ I+S+  G+VPC AT A++T+
Sbjct:  142 VDADVKHSGGTDIIDGIAKGRELLSASP-AATSFMIVTTDGAAPD-PQDEADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEELDLALDDIVSTSGGSVPCAATGATVTV 259          
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Match: A0A6H5JRK3_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 5.770e-27
Identity = 67/120 (55.83%), Postives = 86/120 (71.67%), Query Frame = 1
Query:    1 VDADTQIKVGTIISLGIVAGQELLDAAPEASTSFMVVTTDGLSNGGTLAAADAAREVGTILFAVGVGPYTSEDTLLEIAGDEDNIFSLDNFDELDVALEGILSSLSGTVPCPATDASITL 360
            VDAD +   GT I  GI  G+ELL A+P A+TSFM+VTTDG +       ADAAR  GTIL+AVGVG   S++ LL I GDE N+F +DNF+ELD+ALE I+S+  G+VPC AT A++T+
Sbjct:  159 VDADAKYSGGTDIIDGIAKGRELLSASP-AATSFMIVTTDGAAPD-PQDEADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEELDLALEDIVSASGGSVPCAATGATVTV 276          
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Match: D8LLU2_ECTSI (Similar to integrin alpha Hr1-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU2_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.690e-26
Identity = 66/121 (54.55%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 VDADTQIKVG-TIISLGIVAGQELLDAAPEASTSFMVVTTDGLSNGGTLAAADAAREVGTILFAVGVGPYTSEDTLLEIAGDEDNIFSLDNFDELDVALEGILSSLSGTVPCPATDASITL 360
            VD +T+   G T I  GI  G+ELL A+P A+TSFM+VTTDG S+    A ADAAR+ GTI++AVGVG   +++ LL+I G+E N+F +D FDELDVAL GILS+   +VPC AT A++T+
Sbjct:  128 VDGNTKYSSGGTDIIDGIAKGRELLKASP-ATTSFMIVTTDGQSSS-PKAEADAARDEGTIVYAVGVGTGPTQEILLDIGGEEANVFDVDGFDELDVALAGILSASGSSVPCAATGATVTV 246          
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Match: D7FHN6_ECTSI (Glycin-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 2.860e-26
Identity = 65/120 (54.17%), Postives = 86/120 (71.67%), Query Frame = 1
Query:    1 VDADTQIKVGTIISLGIVAGQELLDAAPEASTSFMVVTTDGLSNGGTLAAADAAREVGTILFAVGVGPYTSEDTLLEIAGDEDNIFSLDNFDELDVALEGILSSLSGTVPCPATDASITL 360
            VDAD +   GT I  GI  G+ELL A+P  +TSFM+VTTDG++       ADAAR  GTIL+AVGVG   S++ LL I GDE N+F +DNF+ELD+AL+ I+S+  G+VPC AT A++T+
Sbjct:  149 VDADAKYSGGTDIIDGIAKGRELLSASPT-TTSFMIVTTDGVAPD-PQDEADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEELDLALDDIVSASGGSVPCAATGATVTV 266          
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Match: A0A6H5JR61_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR61_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 3.190e-24
Identity = 63/123 (51.22%), Postives = 85/123 (69.11%), Query Frame = 1
Query:    1 VDADTQIKV---GTIISLGIVAGQELLDAAPEASTSFMVVTTDGLSNGGTLAAADAAREVGTILFAVGVGPYTSEDTLLEIAGDEDNIFSLDNFDELDVALEGILSSLSGTVPCPATDASITL 360
            VDA+T+       T I  GI  G+ELL A+P  +TS+M+VTTDG ++      ADAAR  GTI++AVGVG   + +TLL I GDE N+F +DNF+ELDV LE I+S+  G+VPC AT A++T+
Sbjct:  176 VDAETKYATFGGSTNIISGIAKGRELLGASPT-TTSYMIVTTDGEADS-PQDEADAARAEGTIMYAVGVGSVPTAETLLAIGGDEANVFDVDNFEELDVVLEDIVSASGGSVPCAATAATVTV 296          
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Match: A0A6H5JNZ2_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.670e-21
Identity = 63/121 (52.07%), Postives = 83/121 (68.60%), Query Frame = 1
Query:    1 VDADTQIKV-GTIISLGIVAGQELLDAAPEASTSFMVVTTDGLSNGGTLAAADAAREVGTILFAVGVGPYTSEDTLLEIAGDEDNIFSLDNFDELDVALEGILSSLSGTVPCPATDASITL 360
            VD  T+ +  GT I  GI  G+ELL+A+P  +TSFM+V TDG S+      ADAAR  GTI++AVGVG   +E  LL+IAGD+ N FS+D+FDELD    GILS+   +VPC AT A++T+
Sbjct:  128 VDGSTKYQSQGTNIIAGIAKGRELLNASPT-TTSFMIVITDGQSSS-PKDEADAARAEGTIVYAVGVGSGPTESVLLDIAGDDSNKFSVDDFDELD----GILSASGSSVPCAATGATVTV 242          
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Match: D7G513_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G513_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 3.960e-19
Identity = 57/122 (46.72%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 VDADTQIKVGTIISLGIVAGQELLDAAPEASTSFMVVTTDGLSN--GGTLAAADAAREVGTILFAVGVGPYTSEDTLLEIAGDEDNIFSLDNFDELDVALEGILSSLSGTVPCPATDASITL 360
            VD  + I+  T I  G+  G+ELL       TSF+++ TDG  N  G     ADAAR+ GTI++AVGVGP  SE TLL I GD  N+F   NF ELD  L+ I+S+   ++PC ATDA I++
Sbjct:  137 VDNASWIEGDTNIEAGLSKGRELLANGTSTRTSFLILITDGDWNRGGDPQIEADAARDEGTIVYAVGVGPDVSEATLLSIGGDLTNVFDASNFTELDNTLDEIVSTSVDSIPCAATDAVISV 258          
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Match: A0A6H5KCW7_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW7_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 6.040e-15
Identity = 58/122 (47.54%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 VDADTQIKVGTIISLGIVAGQELLDAAPEASTSFMVVTTDGLSNGGTLAAADAAR-EVGTILFAVGVGPYTSEDTLLEIAGDEDNIFSLDNFDELDVALEGILSSLSGTV-PCPATDASITL 360
            VD+  Q    T I+ GI+AG+ LL+  P AS SFMV+ TDG S      AA   R +  T +FAVGVG   S +TLL+IAG+E N+FS+ NF  L+ A+E I      TV  CPAT+ SIT+
Sbjct:  118 VDSVIQWGGDTDIADGIIAGRALLNENP-ASFSFMVLITDGESYTDPSTAAQETRADNTTTIFAVGVGSQISTETLLDIAGEESNVFSVTNFSSLEAAVEDIEVIADQTVLSCPATNVSITV 238          
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Match: A0A8C3ZTJ3_9TELE (Collagen, type XXI, alpha 1 n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3ZTJ3_9TELE)

HSP 1 Score: 53.5 bits (127), Expect = 8.760e-6
Identity = 36/93 (38.71%), Postives = 49/93 (52.69%), Query Frame = 1
Query:   67 LLDAAPEASTSFMVVTTDGLSNGGTLAAADAAREVGTILFAVGVGPYTSEDTLLEIAGDEDN--IFSLDNFDELDVALEGILSSLSGTVPCPA 339
            L +  P+      VV TDG S    LAAA+AAR+ G ILFA+GVG  T ED L  IA    +  +FS+ +++ +    E I   L     CP+
Sbjct:  152 LSERGPKGIAKIAVVLTDGKSQDEVLAAAEAARKKGIILFAIGVGSETEEDELRMIANKPSSTYVFSVVDYEAISKIREVIRQKLCEETVCPS 244          
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Match: UPI0010A4976F (collagen alpha-1(XXI) chain-like isoform X1 n=2 Tax=Denticeps clupeoides TaxID=299321 RepID=UPI0010A4976F)

HSP 1 Score: 53.5 bits (127), Expect = 8.920e-6
Identity = 36/93 (38.71%), Postives = 49/93 (52.69%), Query Frame = 1
Query:   67 LLDAAPEASTSFMVVTTDGLSNGGTLAAADAAREVGTILFAVGVGPYTSEDTLLEIAGDEDN--IFSLDNFDELDVALEGILSSLSGTVPCPA 339
            L +  P+      VV TDG S    LAAA+AAR+ G ILFA+GVG  T ED L  IA    +  +FS+ +++ +    E I   L     CP+
Sbjct:  193 LSERGPKGIAKIAVVLTDGKSQDEVLAAAEAARKKGIILFAIGVGSETEEDELRMIANKPSSTYVFSVVDYEAISKIREVIRQKLCEETVCPS 285          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FY49_ECTSI3.300e-2755.00Similar to collagen, partial n=2 Tax=Ectocarpus si... [more]
A0A6H5JRK3_9PHAE5.770e-2755.83VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LLU2_ECTSI1.690e-2654.55Similar to integrin alpha Hr1-like n=1 Tax=Ectocar... [more]
D7FHN6_ECTSI2.860e-2654.17Glycin-rich protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JR61_9PHAE3.190e-2451.22VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JNZ2_9PHAE2.670e-2152.07VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G513_ECTSI3.960e-1946.72VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KCW7_9PHAE6.040e-1547.54VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A8C3ZTJ3_9TELE8.760e-638.71Collagen, type XXI, alpha 1 n=1 Tax=Denticeps clup... [more]
UPI0010A4976F8.920e-638.71collagen alpha-1(XXI) chain-like isoform X1 n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1176contigP-littoralis_Contig1176:26100..27237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHN6
PFAMsCollagen
Model size363
Max annot lvl2759|Eukaryota
KEGG koko:K19720
KEGG Pathwayko04611,ko04926,ko04933,ko04974,ko05146,map04611,map04926,map04933,map04974,map05146
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.69e-27
EggNOG OGsKOG3544@1|root,KOG3544@2759|Eukaryota
Descriptionstructural constituent of cuticle
Cds size360
COG categoryD
BRITEko00000,ko00001,ko00536
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789492.1871488-CDS-P-littoralis_Contig1176:26100..261741680789492.1871488-CDS-P-littoralis_Contig1176:26100..26174Pylaiella littoralis U1_48CDSP-littoralis_Contig1176 26101..26174 -
1680789492.1997995-CDS-P-littoralis_Contig1176:26532..266741680789492.1997995-CDS-P-littoralis_Contig1176:26532..26674Pylaiella littoralis U1_48CDSP-littoralis_Contig1176 26533..26674 -
1680789492.2166464-CDS-P-littoralis_Contig1176:27093..272371680789492.2166464-CDS-P-littoralis_Contig1176:27093..27237Pylaiella littoralis U1_48CDSP-littoralis_Contig1176 27094..27237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1176.12.1prot_P-littoralis_Contig1176.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1176 26101..27237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1176.12.1

>prot_P-littoralis_Contig1176.12.1 ID=prot_P-littoralis_Contig1176.12.1|Name=mRNA_P-littoralis_Contig1176.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
VDADTQIKVGTIISLGIVAGQELLDAAPEASTSFMVVTTDGLSNGGTLAA
ADAAREVGTILFAVGVGPYTSEDTLLEIAGDEDNIFSLDNFDELDVALEG
ILSSLSGTVPCPATDASITL
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mRNA from alignment at P-littoralis_Contig1176:26100..27237-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1176.12.1 ID=mRNA_P-littoralis_Contig1176.12.1|Name=mRNA_P-littoralis_Contig1176.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1138bp|location=Sequence derived from alignment at P-littoralis_Contig1176:26100..27237- (Pylaiella littoralis U1_48)
GTCGACGCGGACACACAGATAAAGGTCGGGACGATCATCTCGTTGGGTAT CGTCGCCGGGCAGGAGCTGCTCGACGCTGCACCTGAAGCATCCACGTCGT TCATGGTGGTCACCACCGACGGATTATCCAACGGGGGCACGTTGGTGCGT CATATGGCTTGCTTTGCTCTCGAATCCACACGGTTCTTCGTCCGTACTTT ACGCTCTGTCTTGATAGTTTTCCTAGATCAATTCCTTGAACAGGTCCTTT AGCAACATGGTACCCGGGTGTGTCGTTGTTGCCAGTCAATCGTGTTCGAC GATGGAACCGTAGGTTTTCGAAGGTTGGTTCGGTTCGGTTCTACTCCGTC GGGAGGGGAGGATGGCCGCTACAAAAGCGTGCAGGTCATGGATCCTCTCA TCACCCAAACGAAATGCCCGACCCACGCTGAGTCGCACCACCGGCCCTGA GTTTGGTCGTGTGCCCTCAAGAACATCTCTCACGATTTTCCTGCTCTCAA TGCTATATACTTACTGTTTCCGTCATTATCCCTGGCGGAATGACATGTGC GGCTCCTCTTCAGGCTGCGGCAGATGCGGCTCGGGAGGTAGGAACCATCC TTTTCGCCGTTGGCGTGGGTCCCTACACCTCTGAGGACACACTCCTGGAG ATCGCAGGAGACGAAGACAACATCTTCAGTTTGGACAACTTCGACGAACT GGACGGTGAGTTGTGAACATAGTTGTTCGTTGTACCTTTTCTCGATTTTT CCGGCGCCTTGCTGTAGGCGGTGAGCTGCTGCTCTACACGTCTTGCTGCA GATCGTCCACGCGTTTGGTGGCCGCTTGCCGTCCCTCTCTTTTGTGTAGT GCTTCCTTGCAGTGCTGGAGACGAAGTGGGCTTGCCAGCCGCCAGAAGAA TTCTGCGCCCATGCTGTGCGATTCTCTGTCCGATCGGGCCCGAGAACGGT GAAGAAGATCCTTGAACGAACGCGCCATGTACAACATGTAGACGAATTCG ACCCTTACTCTCACCTTTGCTTTCGCCGGACCCGACTACCCCCGCTTCCG CCCCCCGCCCCAGTCGCCCTCGAGGGCATCCTGTCGTCGCTTAGCGGCAC CGTCCCGTGCCCCGCCACCGACGCGTCGATCACCCTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1176:26100..27237-

>mRNA_P-littoralis_Contig1176.12.1 ID=mRNA_P-littoralis_Contig1176.12.1|Name=mRNA_P-littoralis_Contig1176.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig1176:26100..27237- (Pylaiella littoralis U1_48)
GTCGACGCGGACACACAGATAAAGGTCGGGACGATCATCTCGTTGGGTAT
CGTCGCCGGGCAGGAGCTGCTCGACGCTGCACCTGAAGCATCCACGTCGT
TCATGGTGGTCACCACCGACGGATTATCCAACGGGGGCACGTTGGCTGCG
GCAGATGCGGCTCGGGAGGTAGGAACCATCCTTTTCGCCGTTGGCGTGGG
TCCCTACACCTCTGAGGACACACTCCTGGAGATCGCAGGAGACGAAGACA
ACATCTTCAGTTTGGACAACTTCGACGAACTGGACGTCGCCCTCGAGGGC
ATCCTGTCGTCGCTTAGCGGCACCGTCCCGTGCCCCGCCACCGACGCGTC
GATCACCCTC
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