mRNA_P-littoralis_Contig1176.12.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Match: D7FY49_ECTSI (Similar to collagen, partial n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY49_ECTSI) HSP 1 Score: 112 bits (279), Expect = 3.300e-27 Identity = 66/120 (55.00%), Postives = 86/120 (71.67%), Query Frame = 1
Query: 1 VDADTQIKVGTIISLGIVAGQELLDAAPEASTSFMVVTTDGLSNGGTLAAADAAREVGTILFAVGVGPYTSEDTLLEIAGDEDNIFSLDNFDELDVALEGILSSLSGTVPCPATDASITL 360
VDAD + GT I GI G+ELL A+P A+TSFM+VTTDG + ADAAR GTIL+AVGVG S++ LL I GDE N+F +DNF+ELD+AL+ I+S+ G+VPC AT A++T+
Sbjct: 142 VDADVKHSGGTDIIDGIAKGRELLSASP-AATSFMIVTTDGAAPD-PQDEADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEELDLALDDIVSTSGGSVPCAATGATVTV 259
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Match: A0A6H5JRK3_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE) HSP 1 Score: 114 bits (284), Expect = 5.770e-27 Identity = 67/120 (55.83%), Postives = 86/120 (71.67%), Query Frame = 1
Query: 1 VDADTQIKVGTIISLGIVAGQELLDAAPEASTSFMVVTTDGLSNGGTLAAADAAREVGTILFAVGVGPYTSEDTLLEIAGDEDNIFSLDNFDELDVALEGILSSLSGTVPCPATDASITL 360
VDAD + GT I GI G+ELL A+P A+TSFM+VTTDG + ADAAR GTIL+AVGVG S++ LL I GDE N+F +DNF+ELD+ALE I+S+ G+VPC AT A++T+
Sbjct: 159 VDADAKYSGGTDIIDGIAKGRELLSASP-AATSFMIVTTDGAAPD-PQDEADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEELDLALEDIVSASGGSVPCAATGATVTV 276
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Match: D8LLU2_ECTSI (Similar to integrin alpha Hr1-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU2_ECTSI) HSP 1 Score: 110 bits (274), Expect = 1.690e-26 Identity = 66/121 (54.55%), Postives = 88/121 (72.73%), Query Frame = 1
Query: 1 VDADTQIKVG-TIISLGIVAGQELLDAAPEASTSFMVVTTDGLSNGGTLAAADAAREVGTILFAVGVGPYTSEDTLLEIAGDEDNIFSLDNFDELDVALEGILSSLSGTVPCPATDASITL 360
VD +T+ G T I GI G+ELL A+P A+TSFM+VTTDG S+ A ADAAR+ GTI++AVGVG +++ LL+I G+E N+F +D FDELDVAL GILS+ +VPC AT A++T+
Sbjct: 128 VDGNTKYSSGGTDIIDGIAKGRELLKASP-ATTSFMIVTTDGQSSS-PKAEADAARDEGTIVYAVGVGTGPTQEILLDIGGEEANVFDVDGFDELDVALAGILSASGSSVPCAATGATVTV 246
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Match: D7FHN6_ECTSI (Glycin-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI) HSP 1 Score: 112 bits (279), Expect = 2.860e-26 Identity = 65/120 (54.17%), Postives = 86/120 (71.67%), Query Frame = 1
Query: 1 VDADTQIKVGTIISLGIVAGQELLDAAPEASTSFMVVTTDGLSNGGTLAAADAAREVGTILFAVGVGPYTSEDTLLEIAGDEDNIFSLDNFDELDVALEGILSSLSGTVPCPATDASITL 360
VDAD + GT I GI G+ELL A+P +TSFM+VTTDG++ ADAAR GTIL+AVGVG S++ LL I GDE N+F +DNF+ELD+AL+ I+S+ G+VPC AT A++T+
Sbjct: 149 VDADAKYSGGTDIIDGIAKGRELLSASPT-TTSFMIVTTDGVAPD-PQDEADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEELDLALDDIVSASGGSVPCAATGATVTV 266
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Match: A0A6H5JR61_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR61_9PHAE) HSP 1 Score: 104 bits (260), Expect = 3.190e-24 Identity = 63/123 (51.22%), Postives = 85/123 (69.11%), Query Frame = 1
Query: 1 VDADTQIKV---GTIISLGIVAGQELLDAAPEASTSFMVVTTDGLSNGGTLAAADAAREVGTILFAVGVGPYTSEDTLLEIAGDEDNIFSLDNFDELDVALEGILSSLSGTVPCPATDASITL 360
VDA+T+ T I GI G+ELL A+P +TS+M+VTTDG ++ ADAAR GTI++AVGVG + +TLL I GDE N+F +DNF+ELDV LE I+S+ G+VPC AT A++T+
Sbjct: 176 VDAETKYATFGGSTNIISGIAKGRELLGASPT-TTSYMIVTTDGEADS-PQDEADAARAEGTIMYAVGVGSVPTAETLLAIGGDEANVFDVDNFEELDVVLEDIVSASGGSVPCAATAATVTV 296
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Match: A0A6H5JNZ2_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 2.670e-21 Identity = 63/121 (52.07%), Postives = 83/121 (68.60%), Query Frame = 1
Query: 1 VDADTQIKV-GTIISLGIVAGQELLDAAPEASTSFMVVTTDGLSNGGTLAAADAAREVGTILFAVGVGPYTSEDTLLEIAGDEDNIFSLDNFDELDVALEGILSSLSGTVPCPATDASITL 360
VD T+ + GT I GI G+ELL+A+P +TSFM+V TDG S+ ADAAR GTI++AVGVG +E LL+IAGD+ N FS+D+FDELD GILS+ +VPC AT A++T+
Sbjct: 128 VDGSTKYQSQGTNIIAGIAKGRELLNASPT-TTSFMIVITDGQSSS-PKDEADAARAEGTIVYAVGVGSGPTESVLLDIAGDDSNKFSVDDFDELD----GILSASGSSVPCAATGATVTV 242
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Match: D7G513_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G513_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 3.960e-19 Identity = 57/122 (46.72%), Postives = 75/122 (61.48%), Query Frame = 1
Query: 1 VDADTQIKVGTIISLGIVAGQELLDAAPEASTSFMVVTTDGLSN--GGTLAAADAAREVGTILFAVGVGPYTSEDTLLEIAGDEDNIFSLDNFDELDVALEGILSSLSGTVPCPATDASITL 360
VD + I+ T I G+ G+ELL TSF+++ TDG N G ADAAR+ GTI++AVGVGP SE TLL I GD N+F NF ELD L+ I+S+ ++PC ATDA I++
Sbjct: 137 VDNASWIEGDTNIEAGLSKGRELLANGTSTRTSFLILITDGDWNRGGDPQIEADAARDEGTIVYAVGVGPDVSEATLLSIGGDLTNVFDASNFTELDNTLDEIVSTSVDSIPCAATDAVISV 258
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Match: A0A6H5KCW7_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW7_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 6.040e-15 Identity = 58/122 (47.54%), Postives = 75/122 (61.48%), Query Frame = 1
Query: 1 VDADTQIKVGTIISLGIVAGQELLDAAPEASTSFMVVTTDGLSNGGTLAAADAAR-EVGTILFAVGVGPYTSEDTLLEIAGDEDNIFSLDNFDELDVALEGILSSLSGTV-PCPATDASITL 360
VD+ Q T I+ GI+AG+ LL+ P AS SFMV+ TDG S AA R + T +FAVGVG S +TLL+IAG+E N+FS+ NF L+ A+E I TV CPAT+ SIT+
Sbjct: 118 VDSVIQWGGDTDIADGIIAGRALLNENP-ASFSFMVLITDGESYTDPSTAAQETRADNTTTIFAVGVGSQISTETLLDIAGEESNVFSVTNFSSLEAAVEDIEVIADQTVLSCPATNVSITV 238
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Match: A0A8C3ZTJ3_9TELE (Collagen, type XXI, alpha 1 n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3ZTJ3_9TELE) HSP 1 Score: 53.5 bits (127), Expect = 8.760e-6 Identity = 36/93 (38.71%), Postives = 49/93 (52.69%), Query Frame = 1
Query: 67 LLDAAPEASTSFMVVTTDGLSNGGTLAAADAAREVGTILFAVGVGPYTSEDTLLEIAGDEDN--IFSLDNFDELDVALEGILSSLSGTVPCPA 339
L + P+ VV TDG S LAAA+AAR+ G ILFA+GVG T ED L IA + +FS+ +++ + E I L CP+
Sbjct: 152 LSERGPKGIAKIAVVLTDGKSQDEVLAAAEAARKKGIILFAIGVGSETEEDELRMIANKPSSTYVFSVVDYEAISKIREVIRQKLCEETVCPS 244
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Match: UPI0010A4976F (collagen alpha-1(XXI) chain-like isoform X1 n=2 Tax=Denticeps clupeoides TaxID=299321 RepID=UPI0010A4976F) HSP 1 Score: 53.5 bits (127), Expect = 8.920e-6 Identity = 36/93 (38.71%), Postives = 49/93 (52.69%), Query Frame = 1
Query: 67 LLDAAPEASTSFMVVTTDGLSNGGTLAAADAAREVGTILFAVGVGPYTSEDTLLEIAGDEDN--IFSLDNFDELDVALEGILSSLSGTVPCPA 339
L + P+ VV TDG S LAAA+AAR+ G ILFA+GVG T ED L IA + +FS+ +++ + E I L CP+
Sbjct: 193 LSERGPKGIAKIAVVLTDGKSQDEVLAAAEAARKKGIILFAIGVGSETEEDELRMIANKPSSTYVFSVVDYEAISKIREVIRQKLCEETVCPS 285 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1176.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1176.12.1 >prot_P-littoralis_Contig1176.12.1 ID=prot_P-littoralis_Contig1176.12.1|Name=mRNA_P-littoralis_Contig1176.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp VDADTQIKVGTIISLGIVAGQELLDAAPEASTSFMVVTTDGLSNGGTLAAback to top mRNA from alignment at P-littoralis_Contig1176:26100..27237- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1176.12.1 ID=mRNA_P-littoralis_Contig1176.12.1|Name=mRNA_P-littoralis_Contig1176.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1138bp|location=Sequence derived from alignment at P-littoralis_Contig1176:26100..27237- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1176:26100..27237- >mRNA_P-littoralis_Contig1176.12.1 ID=mRNA_P-littoralis_Contig1176.12.1|Name=mRNA_P-littoralis_Contig1176.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig1176:26100..27237- (Pylaiella littoralis U1_48)back to top |