mRNA_P-littoralis_Contig693.42.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Match: A0A6H5L2U2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2U2_9PHAE) HSP 1 Score: 330 bits (846), Expect = 9.780e-109 Identity = 171/196 (87.24%), Postives = 185/196 (94.39%), Query Frame = 3
Query: 93 ALSYIDKGYDDPQMKQIVHSLIQDEMAAFEPLDYLADKPDPRTRFKSPLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRSLDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNIKRKTSQEVAERTLWNLARKRAEGFDKNLKIQLACEGLRVEVKRLKTL 680
ALSYIDK YDDP+MK+IVHSLI++EMAAFEP DYLADKP P TRFKSPLLKSEWARVRAEK ++ +DTSRYDLQPPQGAAAE+E AWKR+LDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAE VN+KRKTSQE AE+TLWNLARKR+EGFDKN++IQLACEGLR EVKRLK L
Sbjct: 22 ALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRFKSPLLKSEWARVRAEKPLDVIDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAERVNLKRKTSQEAAEKTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLKAL 217
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Match: A0A835YMV2_9STRA (Pre-mRNA-splicing factor SPF27 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMV2_9STRA) HSP 1 Score: 155 bits (391), Expect = 4.880e-41 Identity = 91/205 (44.39%), Postives = 132/205 (64.39%), Query Frame = 3
Query: 69 ASQEQHLSALSYIDKGYDDPQMKQIVHSLIQDEMAAFEPLDYLADKPDPRTRF---KSPLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRSLDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNIKRKTSQEVAERTLWNLARKRAEGFDKNLKIQLACEGLRVEVKRLK 674
AS + AL YIDK YDDP+ +++VH LI++EMA F P +YL D+ K +L +E ARV M +D +RY+++ P GA AE+ AW+ ++ NA+AQ HQ+NR LNLELL NYGA+ WL HNKA G E+ + + KR R+EA+++N +R+ +Q + LW+L R+R E DKNL+I LA L+ ++K+ K
Sbjct: 2 ASDTVFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRPKEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKKYK 206
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Match: W7TEH7_9STRA (Breast carcinoma amplified sequence 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEH7_9STRA) HSP 1 Score: 133 bits (334), Expect = 2.400e-32 Identity = 94/217 (43.32%), Postives = 128/217 (58.99%), Query Frame = 3
Query: 60 TMAASQEQ-HLSALSYIDKGYDDPQMKQIVHSLIQDEMA--AFEPLDYLADKPDPRTRF-KSPLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRSLDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNIKRKTSQEVAERTLWNLARKRAEGFDKNLKIQLACEGLRVEVKRLKTLAQAEAA 698
TM S EQ +L AL YID G DP ++ V LI +EM F DYLAD+P P F KS + +E RV A K M P+D SRY + P + AW+ +L+N RAQ EH NR++N+ELLQN+ +WL +N+ E + + + + R+EAE +N+ RKT QE L NL RKR E NL++Q AC LR+E+KRL+T ++AA
Sbjct: 16 TMHPSLEQLNLDALPYID-GEMDPDIRARVDQLILEEMRNPRFPKRDYLADRPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASKAA 231
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Match: A0A4D9DBM6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBM6_9STRA) HSP 1 Score: 132 bits (332), Expect = 2.750e-29 Identity = 94/216 (43.52%), Postives = 127/216 (58.80%), Query Frame = 3
Query: 63 MAASQEQ-HLSALSYIDKGYDDPQMKQIVHSLIQDEMA--AFEPLDYLADKPDPRTRF-KSPLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRSLDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNIKRKTSQEVAERTLWNLARKRAEGFDKNLKIQLACEGLRVEVKRLKTLAQAEAA 698
M S EQ +L AL YID G DP ++ V LI +EM F DYLAD+P P F KS + +E RV A K M P+D SRY + P + AW+ +L+N RAQ EH NR++N+ELLQN+ +WL +N+ E + + + + R+EAE +N+ RKT QE L NL RKR E NL++Q AC LR+E+KRL+T +EAA
Sbjct: 1 MHPSLEQLNLDALPYID-GEMDPDIRVRVDQLILEEMRNPRFSKRDYLADRPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAECINLSRKTKQEEVAPRLSNLTRKRDEILYTNLELQKACAMLRMEIKRLRTDVASEAA 215
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Match: A0A5J4YGH3_9CHLO (Pre-mRNA-splicing factor SPF27 protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YGH3_9CHLO) HSP 1 Score: 112 bits (280), Expect = 1.290e-24 Identity = 78/199 (39.20%), Postives = 118/199 (59.30%), Query Frame = 3
Query: 87 LSALSYIDKGYDDPQMKQIVHSLIQDEMAAF--EPLDYLADKPD-PRTRFKS-PLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRSLDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNIKRKTSQEVAERTLWNLARKRAEGFDKNLKIQLACEGLRVEVKRL 671
+ AL YID D + + LI++E+ +P DYLA P P +RF+ P+L+ E+ARV+A K ME MDTSR+ L PP + + AW+ + DNA +Q EHQ+NRLLNLELL +G + HNK+ EG + + ++ +++ +S+N +RK SQE R L + ++ KN++I +AC+ L EV L
Sbjct: 20 IDALPYIDGMTSDDRHQ--AEELIKEELKKSNKKPSDYLASFPPLPASRFEGHPILQHEFARVKAGKQMEAMDTSRFHLTPPPASKQNDFSAWRAATDNAHSQLEHQYNRLLNLELLLRFGPNARRVHNKSLEGQVHRLEKEIEQLQQQKDSINRQRKLSQESDGRALQQMEQQYTALVAKNMEINMACQELESEVSEL 216
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Match: A0A3M7PSE4_BRAPC (Pre-mRNA-splicing factor SPF27 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7PSE4_BRAPC) HSP 1 Score: 105 bits (263), Expect = 1.420e-22 Identity = 69/205 (33.66%), Postives = 115/205 (56.10%), Query Frame = 3
Query: 87 LSALSYIDKGYDDPQMKQIVHSLIQDEMAAFEPLDYLADKPDPRT--RFKSPLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRSLDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNIKRKTSQEVAERTLWNLARKRAEGFDKNLKIQLACEGLR---VEVKRLKTLAQ 686
+ AL YID GY++P++KQ+V SLI++E ++P + P F++ +LK+E+ R+ + ME M RY+L PP + AW S++N++AQ EHQ +R++NLELL +YGA+ W +N+ + Q + ++ ++VN+ RK Q A L NL +K KN +I+ A L +++K+ K A+
Sbjct: 7 VDALPYIDSGYEEPEVKQMVFSLIEEECRRYKPTKNYLEVFGPTNLHAFETDILKNEFQRMEQRQPMEMMSMKRYELLPPSSGKQSDVSAWLESVENSQAQLEHQISRIVNLELLSDYGANSWKTYNQTLKSMTDQAEKQLEDLKKNIQNVNLSRKYEQTSAGSKLDNLEKKWIGLVSKNYEIECAIVELEKELIDIKKKKISAE 211
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Match: A0A834YNA2_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834YNA2_9MAGN) HSP 1 Score: 106 bits (264), Expect = 1.740e-22 Identity = 74/204 (36.27%), Postives = 117/204 (57.35%), Query Frame = 3
Query: 72 SQEQHLSALSYIDKGYDDPQMKQIVHSLIQDEM--AAFEPLDYLADKPD-PRTRFKS-PLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRSLDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNIKRKTSQEVAERTLWNLARKRAEGFDKNLKIQLACEGLRVEVKRL 671
S+EQ + AL YID Y DP +K+ V L+++EM + +P D+L D P P++ FK+ P+L E+ RV++ K +D SRY L+PP +E AWK +L+ A+ +HQ RL NL+L+ +GA +W HN+ E + + + A E+ E VN +RK Q+ L L+ + E +KN++IQ AC + ++ L
Sbjct: 25 SKEQIIDALPYIDDDYGDPNVKEDVDRLVEEEMRRSTKKPADFLKDLPPLPKSNFKNHPMLAREYERVKSGKPPVALDMSRYGLEPPPVNKRNDETAWKLALEKAQRLLQHQVVRLENLDLMSKHGADVWKHHNQQLEAFLSRMQAMALGQNEKIEIVNRERKYHQQNTAVELDALSAQWKELCEKNIEIQAACAMIENHIEEL 228
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Match: A0A200R445_9MAGN (Pre-mRNA-splicing factor SPF27 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200R445_9MAGN) HSP 1 Score: 106 bits (264), Expect = 1.810e-22 Identity = 73/207 (35.27%), Postives = 120/207 (57.97%), Query Frame = 3
Query: 78 EQHLSALSYIDKGYDDPQMKQIVHSLIQDEM--AAFEPLDYLADKPD-PRTRFKS-PLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRSLDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNIKRKTSQEVAERTLWN-LARKRAEGFDKNLKIQLACEGLRVEVKRLKTLA 683
++ + +L YID Y DP +K++V L+++EM + +P DYL D P P++ F++ P+L E+ RVRA K ++ SRY L+PP G + AWK L+NA++ +HQ RL NL+L+ +G +W HN+ E + + + A+ E ESVN +RK Q+ N L+ + E +KN++IQ AC + ++ L++ A
Sbjct: 25 QEIIDSLPYIDDDYGDPNVKEVVDKLVEEEMRRSTKKPADYLKDLPPAPKSNFENHPMLAREYERVRAGKPPVTLEMSRYGLEPPPGNKWNDANAWKLHLENAQSSLQHQIVRLENLDLMSKHGGDIWKHHNQRLEAFLSRMQAMAQGYNERIESVNRERKYHQQQNTAVELNALSMQWKELCEKNIEIQSACAAIENHIEGLRSEA 231
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Match: A0A1Y1W5F2_9FUNG (Breast carcinoma amplified sequence 2 n=2 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W5F2_9FUNG) HSP 1 Score: 103 bits (258), Expect = 4.240e-22 Identity = 77/201 (38.31%), Postives = 109/201 (54.23%), Query Frame = 3
Query: 72 SQEQHLSALSYIDKGYDDPQMKQIVHSLIQDEMAAFEPLDYLADKPDPRTRFKS-PLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRSLDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNIKRKTSQEVAERTLWNLARKRAEGFDKNLKIQLACEGLRVEVKRL 671
S + +L YIDK YDDP M+ V SLIQ EM P P T FK+ LL+ E+ RVRA K + D RY L+ P+ + ++ W+ + +NA AQ EHQ+ RL+NLELLQ +GA+ W N +EG + R R+E +VN RK Q A L ++ + EG K ++IQ+A L+ E+ +L
Sbjct: 3 SHSAAIDSLPYIDKEYDDPSMRDQVSSLIQKEMGRMSP----PLLPKSTTLFKNNDLLRKEYERVRAGKPLPEFDIERYKLEAPEDS--DSVGIWRSAAENAAAQLEHQNIRLVNLELLQQFGANSWKLSNYQKEGLLRNIEKATDRHRDEGINVNKARKYEQTEAGIRLRDIEERWTEGVKKCIEIQVASSELKGEIAQL 197
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Match: A0A1Y1I6E7_KLENI (BCAS2 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I6E7_KLENI) HSP 1 Score: 104 bits (259), Expect = 6.810e-22 Identity = 75/204 (36.76%), Postives = 116/204 (56.86%), Query Frame = 3
Query: 78 EQHLSALSYID-KGYDDPQMKQIVHSLIQDEM--AAFEPLDYLADKPD-PRTRFKS-PLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRSLDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNIKRKTSQEVAERTLWNLARKRAEGFDKNLKIQLACEGLRVEVKRLK 674
++ + AL YID +G D K+ V +I DEM + +P DYLA+ P P F++ PLL E+ RV+A K P+D SRY + PP + + AW+ ++ NA+AQ HQ R+ NL+L+ YGA+ WL HN+ + T + + R+E ++ N +RK++QE A + L+ + E KNL I AC+ L +V L+
Sbjct: 25 DEDIDALPYIDMQGVTDQSWKKEVERMIADEMKRSTKKPADYLAELPPAPTLNFENCPLLAKEYERVKAGKPPIPLDNSRYKVDPPIKSRQGDLAAWRSAVANAQAQLRHQEIRIENLDLMLKYGANAWLTHNQHLDATSTRLQGIQEAYRDEIDTTNKQRKSTQESAAFEIDRLSSQWLELVRKNLDISAACQVLEEKVDALR 228 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig693.42.1 >prot_P-littoralis_Contig693.42.1 ID=prot_P-littoralis_Contig693.42.1|Name=mRNA_P-littoralis_Contig693.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=218bp MAASQEQHLSALSYIDKGYDDPQMKQIVHSLIQDEMAAFEPLDYLADKPDback to top mRNA from alignment at P-littoralis_Contig693:119022..122692+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig693.42.1 ID=mRNA_P-littoralis_Contig693.42.1|Name=mRNA_P-littoralis_Contig693.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3671bp|location=Sequence derived from alignment at P-littoralis_Contig693:119022..122692+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig693:119022..122692+ >mRNA_P-littoralis_Contig693.42.1 ID=mRNA_P-littoralis_Contig693.42.1|Name=mRNA_P-littoralis_Contig693.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=654bp|location=Sequence derived from alignment at P-littoralis_Contig693:119022..122692+ (Pylaiella littoralis U1_48)back to top |