mRNA_P-littoralis_Contig693.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig693.42.1
Unique NamemRNA_P-littoralis_Contig693.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Match: A0A6H5L2U2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2U2_9PHAE)

HSP 1 Score: 330 bits (846), Expect = 9.780e-109
Identity = 171/196 (87.24%), Postives = 185/196 (94.39%), Query Frame = 3
Query:   93 ALSYIDKGYDDPQMKQIVHSLIQDEMAAFEPLDYLADKPDPRTRFKSPLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRSLDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNIKRKTSQEVAERTLWNLARKRAEGFDKNLKIQLACEGLRVEVKRLKTL 680
            ALSYIDK YDDP+MK+IVHSLI++EMAAFEP DYLADKP P TRFKSPLLKSEWARVRAEK ++ +DTSRYDLQPPQGAAAE+E AWKR+LDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAE VN+KRKTSQE AE+TLWNLARKR+EGFDKN++IQLACEGLR EVKRLK L
Sbjct:   22 ALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRFKSPLLKSEWARVRAEKPLDVIDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAERVNLKRKTSQEAAEKTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLKAL 217          
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Match: A0A835YMV2_9STRA (Pre-mRNA-splicing factor SPF27 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMV2_9STRA)

HSP 1 Score: 155 bits (391), Expect = 4.880e-41
Identity = 91/205 (44.39%), Postives = 132/205 (64.39%), Query Frame = 3
Query:   69 ASQEQHLSALSYIDKGYDDPQMKQIVHSLIQDEMAAFEPLDYLADKPDPRTRF---KSPLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRSLDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNIKRKTSQEVAERTLWNLARKRAEGFDKNLKIQLACEGLRVEVKRLK 674
            AS    + AL YIDK YDDP+ +++VH LI++EMA F P +YL D+          K  +L +E ARV     M  +D +RY+++ P GA AE+  AW+ ++ NA+AQ  HQ+NR LNLELL NYGA+ WL HNKA  G E+ + +  KR R+EA+++N +R+ +Q    + LW+L R+R E  DKNL+I LA   L+ ++K+ K
Sbjct:    2 ASDTVFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRPKEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKKYK 206          
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Match: W7TEH7_9STRA (Breast carcinoma amplified sequence 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEH7_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.400e-32
Identity = 94/217 (43.32%), Postives = 128/217 (58.99%), Query Frame = 3
Query:   60 TMAASQEQ-HLSALSYIDKGYDDPQMKQIVHSLIQDEMA--AFEPLDYLADKPDPRTRF-KSPLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRSLDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNIKRKTSQEVAERTLWNLARKRAEGFDKNLKIQLACEGLRVEVKRLKTLAQAEAA 698
            TM  S EQ +L AL YID G  DP ++  V  LI +EM    F   DYLAD+P P   F KS  + +E  RV A K M P+D SRY  + P      +  AW+ +L+N RAQ EH  NR++N+ELLQN+   +WL +N+  E  +  +  + +  R+EAE +N+ RKT QE     L NL RKR E    NL++Q AC  LR+E+KRL+T   ++AA
Sbjct:   16 TMHPSLEQLNLDALPYID-GEMDPDIRARVDQLILEEMRNPRFPKRDYLADRPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASKAA 231          
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Match: A0A4D9DBM6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBM6_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.750e-29
Identity = 94/216 (43.52%), Postives = 127/216 (58.80%), Query Frame = 3
Query:   63 MAASQEQ-HLSALSYIDKGYDDPQMKQIVHSLIQDEMA--AFEPLDYLADKPDPRTRF-KSPLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRSLDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNIKRKTSQEVAERTLWNLARKRAEGFDKNLKIQLACEGLRVEVKRLKTLAQAEAA 698
            M  S EQ +L AL YID G  DP ++  V  LI +EM    F   DYLAD+P P   F KS  + +E  RV A K M P+D SRY  + P      +  AW+ +L+N RAQ EH  NR++N+ELLQN+   +WL +N+  E  +  +  + +  R+EAE +N+ RKT QE     L NL RKR E    NL++Q AC  LR+E+KRL+T   +EAA
Sbjct:    1 MHPSLEQLNLDALPYID-GEMDPDIRVRVDQLILEEMRNPRFSKRDYLADRPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAECINLSRKTKQEEVAPRLSNLTRKRDEILYTNLELQKACAMLRMEIKRLRTDVASEAA 215          
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Match: A0A5J4YGH3_9CHLO (Pre-mRNA-splicing factor SPF27 protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YGH3_9CHLO)

HSP 1 Score: 112 bits (280), Expect = 1.290e-24
Identity = 78/199 (39.20%), Postives = 118/199 (59.30%), Query Frame = 3
Query:   87 LSALSYIDKGYDDPQMKQIVHSLIQDEMAAF--EPLDYLADKPD-PRTRFKS-PLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRSLDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNIKRKTSQEVAERTLWNLARKRAEGFDKNLKIQLACEGLRVEVKRL 671
            + AL YID    D + +     LI++E+     +P DYLA  P  P +RF+  P+L+ E+ARV+A K ME MDTSR+ L PP  +   +  AW+ + DNA +Q EHQ+NRLLNLELL  +G +    HNK+ EG    +  + ++ +++ +S+N +RK SQE   R L  + ++      KN++I +AC+ L  EV  L
Sbjct:   20 IDALPYIDGMTSDDRHQ--AEELIKEELKKSNKKPSDYLASFPPLPASRFEGHPILQHEFARVKAGKQMEAMDTSRFHLTPPPASKQNDFSAWRAATDNAHSQLEHQYNRLLNLELLLRFGPNARRVHNKSLEGQVHRLEKEIEQLQQQKDSINRQRKLSQESDGRALQQMEQQYTALVAKNMEINMACQELESEVSEL 216          
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Match: A0A3M7PSE4_BRAPC (Pre-mRNA-splicing factor SPF27 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7PSE4_BRAPC)

HSP 1 Score: 105 bits (263), Expect = 1.420e-22
Identity = 69/205 (33.66%), Postives = 115/205 (56.10%), Query Frame = 3
Query:   87 LSALSYIDKGYDDPQMKQIVHSLIQDEMAAFEPLDYLADKPDPRT--RFKSPLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRSLDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNIKRKTSQEVAERTLWNLARKRAEGFDKNLKIQLACEGLR---VEVKRLKTLAQ 686
            + AL YID GY++P++KQ+V SLI++E   ++P     +   P     F++ +LK+E+ R+   + ME M   RY+L PP      +  AW  S++N++AQ EHQ +R++NLELL +YGA+ W  +N+  +        Q +  ++  ++VN+ RK  Q  A   L NL +K      KN +I+ A   L    +++K+ K  A+
Sbjct:    7 VDALPYIDSGYEEPEVKQMVFSLIEEECRRYKPTKNYLEVFGPTNLHAFETDILKNEFQRMEQRQPMEMMSMKRYELLPPSSGKQSDVSAWLESVENSQAQLEHQISRIVNLELLSDYGANSWKTYNQTLKSMTDQAEKQLEDLKKNIQNVNLSRKYEQTSAGSKLDNLEKKWIGLVSKNYEIECAIVELEKELIDIKKKKISAE 211          
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Match: A0A834YNA2_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834YNA2_9MAGN)

HSP 1 Score: 106 bits (264), Expect = 1.740e-22
Identity = 74/204 (36.27%), Postives = 117/204 (57.35%), Query Frame = 3
Query:   72 SQEQHLSALSYIDKGYDDPQMKQIVHSLIQDEM--AAFEPLDYLADKPD-PRTRFKS-PLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRSLDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNIKRKTSQEVAERTLWNLARKRAEGFDKNLKIQLACEGLRVEVKRL 671
            S+EQ + AL YID  Y DP +K+ V  L+++EM  +  +P D+L D P  P++ FK+ P+L  E+ RV++ K    +D SRY L+PP      +E AWK +L+ A+   +HQ  RL NL+L+  +GA +W  HN+  E   + + + A    E+ E VN +RK  Q+     L  L+ +  E  +KN++IQ AC  +   ++ L
Sbjct:   25 SKEQIIDALPYIDDDYGDPNVKEDVDRLVEEEMRRSTKKPADFLKDLPPLPKSNFKNHPMLAREYERVKSGKPPVALDMSRYGLEPPPVNKRNDETAWKLALEKAQRLLQHQVVRLENLDLMSKHGADVWKHHNQQLEAFLSRMQAMALGQNEKIEIVNRERKYHQQNTAVELDALSAQWKELCEKNIEIQAACAMIENHIEEL 228          
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Match: A0A200R445_9MAGN (Pre-mRNA-splicing factor SPF27 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200R445_9MAGN)

HSP 1 Score: 106 bits (264), Expect = 1.810e-22
Identity = 73/207 (35.27%), Postives = 120/207 (57.97%), Query Frame = 3
Query:   78 EQHLSALSYIDKGYDDPQMKQIVHSLIQDEM--AAFEPLDYLADKPD-PRTRFKS-PLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRSLDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNIKRKTSQEVAERTLWN-LARKRAEGFDKNLKIQLACEGLRVEVKRLKTLA 683
            ++ + +L YID  Y DP +K++V  L+++EM  +  +P DYL D P  P++ F++ P+L  E+ RVRA K    ++ SRY L+PP G    +  AWK  L+NA++  +HQ  RL NL+L+  +G  +W  HN+  E   + + + A+   E  ESVN +RK  Q+       N L+ +  E  +KN++IQ AC  +   ++ L++ A
Sbjct:   25 QEIIDSLPYIDDDYGDPNVKEVVDKLVEEEMRRSTKKPADYLKDLPPAPKSNFENHPMLAREYERVRAGKPPVTLEMSRYGLEPPPGNKWNDANAWKLHLENAQSSLQHQIVRLENLDLMSKHGGDIWKHHNQRLEAFLSRMQAMAQGYNERIESVNRERKYHQQQNTAVELNALSMQWKELCEKNIEIQSACAAIENHIEGLRSEA 231          
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Match: A0A1Y1W5F2_9FUNG (Breast carcinoma amplified sequence 2 n=2 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W5F2_9FUNG)

HSP 1 Score: 103 bits (258), Expect = 4.240e-22
Identity = 77/201 (38.31%), Postives = 109/201 (54.23%), Query Frame = 3
Query:   72 SQEQHLSALSYIDKGYDDPQMKQIVHSLIQDEMAAFEPLDYLADKPDPRTRFKS-PLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRSLDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNIKRKTSQEVAERTLWNLARKRAEGFDKNLKIQLACEGLRVEVKRL 671
            S    + +L YIDK YDDP M+  V SLIQ EM    P       P   T FK+  LL+ E+ RVRA K +   D  RY L+ P+ +  ++   W+ + +NA AQ EHQ+ RL+NLELLQ +GA+ W   N  +EG    +     R R+E  +VN  RK  Q  A   L ++  +  EG  K ++IQ+A   L+ E+ +L
Sbjct:    3 SHSAAIDSLPYIDKEYDDPSMRDQVSSLIQKEMGRMSP----PLLPKSTTLFKNNDLLRKEYERVRAGKPLPEFDIERYKLEAPEDS--DSVGIWRSAAENAAAQLEHQNIRLVNLELLQQFGANSWKLSNYQKEGLLRNIEKATDRHRDEGINVNKARKYEQTEAGIRLRDIEERWTEGVKKCIEIQVASSELKGEIAQL 197          
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Match: A0A1Y1I6E7_KLENI (BCAS2 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I6E7_KLENI)

HSP 1 Score: 104 bits (259), Expect = 6.810e-22
Identity = 75/204 (36.76%), Postives = 116/204 (56.86%), Query Frame = 3
Query:   78 EQHLSALSYID-KGYDDPQMKQIVHSLIQDEM--AAFEPLDYLADKPD-PRTRFKS-PLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRSLDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNIKRKTSQEVAERTLWNLARKRAEGFDKNLKIQLACEGLRVEVKRLK 674
            ++ + AL YID +G  D   K+ V  +I DEM  +  +P DYLA+ P  P   F++ PLL  E+ RV+A K   P+D SRY + PP  +   +  AW+ ++ NA+AQ  HQ  R+ NL+L+  YGA+ WL HN+  + T   +    +  R+E ++ N +RK++QE A   +  L+ +  E   KNL I  AC+ L  +V  L+
Sbjct:   25 DEDIDALPYIDMQGVTDQSWKKEVERMIADEMKRSTKKPADYLAELPPAPTLNFENCPLLAKEYERVKAGKPPIPLDNSRYKVDPPIKSRQGDLAAWRSAVANAQAQLRHQEIRIENLDLMLKYGANAWLTHNQHLDATSTRLQGIQEAYRDEIDTTNKQRKSTQESAAFEIDRLSSQWLELVRKNLDISAACQVLEEKVDALR 228          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig693.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2U2_9PHAE9.780e-10987.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YMV2_9STRA4.880e-4144.39Pre-mRNA-splicing factor SPF27 n=1 Tax=Tribonema m... [more]
W7TEH7_9STRA2.400e-3243.32Breast carcinoma amplified sequence 2 n=1 Tax=Nann... [more]
A0A4D9DBM6_9STRA2.750e-2943.52Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A5J4YGH3_9CHLO1.290e-2439.20Pre-mRNA-splicing factor SPF27 protein n=1 Tax=Tre... [more]
A0A3M7PSE4_BRAPC1.420e-2233.66Pre-mRNA-splicing factor SPF27 n=1 Tax=Brachionus ... [more]
A0A834YNA2_9MAGN1.740e-2236.27Uncharacterized protein n=1 Tax=Tetracentron sinen... [more]
A0A200R445_9MAGN1.810e-2235.27Pre-mRNA-splicing factor SPF27 n=1 Tax=Macleaya co... [more]
A0A1Y1W5F2_9FUNG4.240e-2238.31Breast carcinoma amplified sequence 2 n=2 Tax=Lind... [more]
A0A1Y1I6E7_KLENI6.810e-2236.76BCAS2 n=1 Tax=Klebsormidium nitens TaxID=105231 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig693contigP-littoralis_Contig693:119022..122692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQA4
Preferred nameBCAS2
PFAMsBCAS2
Model size1403
Max annot lvl2759|Eukaryota
KEGG koko:K12861,ko:K13336,ko:K20161
KEGG TC3.A.20.1,9.A.17.1
KEGG Pathwayko03040,ko04146,map03040,map04146
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005730,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009870,GO:0009987,GO:0010204,GO:0010467,GO:0015630,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0023052,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045089,GO:0045292,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0070013,GO:0071007,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0080134,GO:0090304,GO:0098542,GO:1901360,GO:1902494,GO:1990904
Exons3
Evalue3.63e-106
EggNOG OGsKOG3096@1|root,KOG3096@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_005540.1
DescriptionmRNA processing
Cds size654
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041,ko03400,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791438.5496173-UTR-P-littoralis_Contig693:119021..1190831680791438.5496173-UTR-P-littoralis_Contig693:119021..119083Pylaiella littoralis U1_48UTRP-littoralis_Contig693 119022..119083 +
1680791438.6026654-UTR-P-littoralis_Contig693:122005..1226921680791438.6026654-UTR-P-littoralis_Contig693:122005..122692Pylaiella littoralis U1_48UTRP-littoralis_Contig693 122006..122692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791438.562425-CDS-P-littoralis_Contig693:119083..1194241680791438.562425-CDS-P-littoralis_Contig693:119083..119424Pylaiella littoralis U1_48CDSP-littoralis_Contig693 119084..119424 +
1680791438.5742016-CDS-P-littoralis_Contig693:121421..1215181680791438.5742016-CDS-P-littoralis_Contig693:121421..121518Pylaiella littoralis U1_48CDSP-littoralis_Contig693 121422..121518 +
1680791438.5862906-CDS-P-littoralis_Contig693:121789..1220051680791438.5862906-CDS-P-littoralis_Contig693:121789..122005Pylaiella littoralis U1_48CDSP-littoralis_Contig693 121790..122005 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig693.42.1prot_P-littoralis_Contig693.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig693 119084..122005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig693.42.1

>prot_P-littoralis_Contig693.42.1 ID=prot_P-littoralis_Contig693.42.1|Name=mRNA_P-littoralis_Contig693.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=218bp
MAASQEQHLSALSYIDKGYDDPQMKQIVHSLIQDEMAAFEPLDYLADKPD
PRTRFKSPLLKSEWARVRAEKAMEPMDTSRYDLQPPQGAAAENEVAWKRS
LDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRA
REEAESVNIKRKTSQEVAERTLWNLARKRAEGFDKNLKIQLACEGLRVEV
KRLKTLAQAEAAKGSPA*
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mRNA from alignment at P-littoralis_Contig693:119022..122692+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig693.42.1 ID=mRNA_P-littoralis_Contig693.42.1|Name=mRNA_P-littoralis_Contig693.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3671bp|location=Sequence derived from alignment at P-littoralis_Contig693:119022..122692+ (Pylaiella littoralis U1_48)
CAGGAAACAGACCAGTGGTGAGCCATCACACCTTGCTTGTGTTGTGGCGA AACCTTACCACCATGGCAGCATCGCAGGAGCAACACCTCTCGGCGTTGTC GTACATCGATAAGGGCTACGACGATCCGCAAATGAAGCAAATAGTGCACT CCCTCATCCAGGACGAGATGGCTGCTTTCGAGCCTCTCGACTACCTCGCA GACAAACCCGACCCCAGGACACGATTCAAAAGTCCTCTTCTCAAGTCGGA GTGGGCTCGTGTTCGAGCGGAGAAGGCCATGGAGCCCATGGACACCTCGC GTTACGATCTCCAGCCTCCGCAGGGTGCGGCGGCAGAGAATGAGGTGGCG TGGAAACGTTCGTTGGATAACGCGCGGGCGCAAACGGAACACCAGCACAA TAGGTATGTGCAGTGTGCCCTCTGCGGAGACTCTGTATCCATCCGGGTCC ACGACTGCCGCTTCTGTAGTCGCACATGTAGCATCATAGCCGCAGCAGGG AGAAGCACGCTATGCGCGATAATCAGTGTGCGATGTGTGCGGTGTGTGCT ACTGCTTTGTGGTGTTTTCCCCTCACTCTCCGCGTTACGACTACAGAGCG TGTACGGCGGTGGGTACTGGGTAATTTGCACTTCGAAGACAGCTTCAGGT AAATCGGGCTGCGGCGGGTATCATACGCGGTTGCTGATGACGGACCGATT TTCGAAGCTCGGTTACTCTCCAGCTACAAGTTGACATGCTGTCGCAGCTA GCAGGAGCGTCGGTGCCGAATAGGGAGCTGCTGGGATAACCGGTATCTCG TCGAGAGCTTTCCGAATGTGTCTCGTTTATGTTGGTGCAGCAGTCCATTT TGTTGTTTCGAAAATCGAACTTCGGTCCGGGGCCCCGTGTACGGGAGACG GTAAACGAACCCCACCCTGGGGCTATGAGTTTTGTTGTTGTTCATGACTC GCTCATGACTCCATGCTGCTCACAGAGTTCTCAAAGAAGAGTATGGTAGA TGGAACACACACGCCCATACGTTTTATGACTCTAACCCTAACCCTAATCC CAAAGCCCGTAGCTAGGATGCTGTACCGTGGTGGATTGGCTAGGATGCTG TACAGTGGCGGATTGGCTAGGATGCTGTACAGTGGCGGATTGGCGAGGAT GCTGTACCGCGGTGGATTGGCTAGGATGCTATACCGTGGCGGATTGGCTA GGATGCTGTACCGTAGCGAATTGGCTAGGATGCTATACCGTGGCGGACTG CTCTGCCTCGTTACCCATGTAGCTACAAGCCGTCATTATTGCTGCTTCCA ACGACGTTTCGCACTTTCTTCTATACTGTCAAATTTCGAAAACCTACTGC TTTCGTCTGCGCCAAGTGAACAAAAATGGAACAAACTTCGCTCTCTATAC CTGGTATCATTTATGTATATCATATCTGTCTTCGTTTTTCACACAAGCCC CAGGGTGGGGTTCGTTTCAAAACGAACCCCGTGGGGTTCGTTTACCGTCT GCCATGATATACCGTATTCTACACGAGATACCACACCCCGTGTTAAGCTT TTTGCATTCCGTATAGCTCCACTACCAGGAGGGTGCCACTGCCGAAAAGG GTGGTTTTGGAAAGATCTCGTCGAGAGCTTTCGTATGACGGGCTGTTTGG TGTTCGCACCCTCCTGGTTGTGGAGCAATACGGAATGCAAAAATCCTAAC ACGGGGTGTGGTATCTTGTGTAGAATACGGTAACTAGGTGGCTGTAACCG GTATTTTGCATAACACGTACCTGTGGTATTGTGTACCCTGGTAGGGTCCA CACCCATCCTCGTTTTCGTGCAGAAGTCTTGTACAAGTTCACATGTGGTG TTGCCAATAATGTCACTAGTGCTGTGCAAGGAGCTGAAGACATATTTCAC ACGAGACATCACGTACACGCAAGACCTATTGCTGTGCGAAATACGGAGTA TTAATATTTGTTGAGCAGCATGTCCTCCACTAAAGTTGGTCCGGCGGTAC CGCTGTTGTCTCGAAACTCGAATGATCTGATATCGCACGTACTGGTACAT CTTTGCTGTGATTTGAGCCCATTTCACTAGCCAGATTCGCACGGAGCAGA AGATTATGTCACGCATTATACACCTTTGCTCTACAAGCTTGACCCGGCCG GACCAGGACGGAAATATGATACAAGTACGCAGTTGGTGGAAGGTTTTGAA TCTGTTGTTAGAAGCAGCACTTCTCGTAGCTTCGGTCATAGACTTGTTTC TCCCAACCGCCATGAGCTTGTATGTACGACGTCGTTGATGCGTACCCGAG CTTTGTACTGCTTGCCGACGCGAGTTGTAGCTTACTCTTTCGTTTTCCTA CAATCTCGTATCATGTCACATGTATTTGTTCCAACACAATGTGCGAACAG GCTACTCAACTTGGAGCTGCTGCAAAATTACGGCGCCAGCATGTGGTTAG GGCACAACAAGGCGGAAGAGGGAACCGAAGCAGCGGTAGCATCGCAGGTT TGTGTGTGTGTGTGTGTTCCCAAACAAGACCACCAACTGCTGTACGCTTT TGCAGTAGTTCAATTCTGGGTGATTCTCGTCCATGCAGAACTTCCCCGAT CTTTCCCCTACGGAGGCGTCAAGGGATTTCCATCTATCCGCGAGCGCATG GTCAAAGCAGTTTCACATACATTCGGACCTCCATTTTTGGTCGCTCGTGT TTCGAACCCGATCCACGTGTTGCATTTCAACCCCCTCGCCCTCTCCTCGT TGTTCGAAAACTCCAAAGGCAAAACGAGCACGCGAAGAGGCGGAGAGTGT GAACATCAAGCGAAAAACCTCGCAAGAGGTGGCGGAGAGGACCTTGTGGA ATTTGGCACGCAAACGAGCAGAGGGTTTTGACAAGAATCTCAAGATTCAG CTGGCGTGTGAGGGGTTAAGGGTGGAGGTGAAGCGGCTCAAGACTCTGGC GCAGGCGGAGGCAGCGAAGGGATCACCGGCATGAAAATGGGGGCGGGGAA TGAGAGCAGGGGGTGGCGGGGGGCGAGCAAAGGATCACTCCGTCGCATAT CAAACAGACCCTTTTAGCAGAAGGAGGCCCGAAAGAAGACATTGTGGGTT CAAATGTCCACGAGATAAATGGAAATTTTGTGCTCGTCCAGCCTCTGCTC GACTTAAGTCTCAAAAGCATGTAGAACTTGGTTCACCTCACATGGCTAAC CATGGAGCCTTAGGCGGGAGTATAGTTTAAGGTTCTTGTGGGAGAACTGG TACTGCTGTGTTGTGTACAGGAATGAGAGATCTTTGTTGTACGGCTGTTT TCCGCGTGTTTCAGAGGTGCCGGTGTGTAGTCGTGACCCGAATAGATGCA CATCAAGTTATACATGTAAAACGGTGGGAATACGAAGACTTGACACTGTC GGAGTGAGGGCGAGAGTATCGGAGGGAAAACATAAAAAATCGCAAGAGAG TTAGTTACGCTGGAACACCCGGCGATGGTGTGTGTGTTGTGTGTTGTCAT CCCATTTATTCTGGGCACCAGCCTACATCTCTCGGTATGAGGTGGGTGCA TCAGCCGGGGTCACGCAGAAAGGTCACACACGAGCTTTTTCACTTTTCAT TTTGTTCTACTGCCCAAACCTTCCTCCTGCGGTACGCGCCTTTGGTTTTT AATGCGAGTCGAGTGCAGCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig693:119022..122692+

>mRNA_P-littoralis_Contig693.42.1 ID=mRNA_P-littoralis_Contig693.42.1|Name=mRNA_P-littoralis_Contig693.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=654bp|location=Sequence derived from alignment at P-littoralis_Contig693:119022..122692+ (Pylaiella littoralis U1_48)
ATGGCAGCATCGCAGGAGCAACACCTCTCGGCGTTGTCGTACATCGATAA
GGGCTACGACGATCCGCAAATGAAGCAAATAGTGCACTCCCTCATCCAGG
ACGAGATGGCTGCTTTCGAGCCTCTCGACTACCTCGCAGACAAACCCGAC
CCCAGGACACGATTCAAAAGTCCTCTTCTCAAGTCGGAGTGGGCTCGTGT
TCGAGCGGAGAAGGCCATGGAGCCCATGGACACCTCGCGTTACGATCTCC
AGCCTCCGCAGGGTGCGGCGGCAGAGAATGAGGTGGCGTGGAAACGTTCG
TTGGATAACGCGCGGGCGCAAACGGAACACCAGCACAATAGGCTACTCAA
CTTGGAGCTGCTGCAAAATTACGGCGCCAGCATGTGGTTAGGGCACAACA
AGGCGGAAGAGGGAACCGAAGCAGCGGTAGCATCGCAGGCAAAACGAGCA
CGCGAAGAGGCGGAGAGTGTGAACATCAAGCGAAAAACCTCGCAAGAGGT
GGCGGAGAGGACCTTGTGGAATTTGGCACGCAAACGAGCAGAGGGTTTTG
ACAAGAATCTCAAGATTCAGCTGGCGTGTGAGGGGTTAAGGGTGGAGGTG
AAGCGGCTCAAGACTCTGGCGCAGGCGGAGGCAGCGAAGGGATCACCGGC
ATGA
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