mRNA_P-littoralis_Contig693.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig693.1.1
Unique NamemRNA_P-littoralis_Contig693.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig693.1.1 vs. uniprot
Match: A0A6F8U1X0_9GAMM (Cell division protein Fic n=1 Tax=Halomonas hydrothermalis TaxID=115561 RepID=A0A6F8U1X0_9GAMM)

HSP 1 Score: 302 bits (774), Expect = 1.510e-102
Identity = 151/174 (86.78%), Postives = 157/174 (90.23%), Query Frame = 3
Query:   45 GSENGVLENLVEITDPTEMNIAETELLEALYMQVFDAFPETLTFPTICRWHRPLAG*CVYRWAGQYRTVDMSKPNIRFASPLQIQRLTKEFEDQYLSRFAELPEMADEQLVAFLAETHVEFILIHPFREGNGRISRLLLDVMAVKAGAQPLDYSLWNRNKEYYFKAIQAGQGRD 566
            GSEN VL NL+ ITDP E+NIAETELLEALYMQVFD FPE LTF TICRWHR   G  VYRWAGQYRTVDMSKPNIRFASP+QIQRLTKEFE+QYLS FAELPE+ DEQLV FLAETHVEFILIHPFREGNGRISRLLLDVMAVKAGAQPLDYSLWN +KEYYFKAIQAGQG D
Sbjct:   16 GSENKVLGNLIGITDPAEINIAETELLEALYMQVFDDFPEALTFQTICRWHRAWLG-NVYRWAGQYRTVDMSKPNIRFASPIQIQRLTKEFEEQYLSHFAELPEVGDEQLVTFLAETHVEFILIHPFREGNGRISRLLLDVMAVKAGAQPLDYSLWNEHKEYYFKAIQAGQGHD 188          
BLAST of mRNA_P-littoralis_Contig693.1.1 vs. uniprot
Match: A0A060B417_9GAMM (Cell division protein Fic n=2 Tax=Halomonas TaxID=2745 RepID=A0A060B417_9GAMM)

HSP 1 Score: 296 bits (759), Expect = 2.910e-100
Identity = 148/175 (84.57%), Postives = 159/175 (90.86%), Query Frame = 3
Query:   42 TGSENGVLENLVEITDPTEMNIAETELLEALYMQVFDAFPETLTFPTICRWHRPLAG*CVYRWAGQYRTVDMSKPNIRFASPLQIQRLTKEFEDQYLSRFAELPEMADEQLVAFLAETHVEFILIHPFREGNGRISRLLLDVMAVKAGAQPLDYSLWNRNKEYYFKAIQAGQGRD 566
            TGSEN VL NLVEITDPTEMN+AETELLE LY+QVFD FPETLTF TIC+WHR   G  VYRWAGQYRTVDMSKPNIRFASP+QIQ+L +EFED+YLSRFA+LPEM DEQLVAFLAE HVEFILIHPFREGNGRISRLLLDVMAVKAGAQPLDYSLWN +K+YYFKAIQAG+  D
Sbjct:   15 TGSENRVLGNLVEITDPTEMNVAETELLEDLYIQVFDDFPETLTFQTICQWHRTWLG-NVYRWAGQYRTVDMSKPNIRFASPIQIQKLAQEFEDRYLSRFAKLPEMDDEQLVAFLAEMHVEFILIHPFREGNGRISRLLLDVMAVKAGAQPLDYSLWNEHKDYYFKAIQAGRDGD 188          
BLAST of mRNA_P-littoralis_Contig693.1.1 vs. uniprot
Match: A0A1U9R541_9GAMM (Cell filamentation protein Fic n=1 Tax=Halomonas sp. 'Soap Lake #7' TaxID=1962264 RepID=A0A1U9R541_9GAMM)

HSP 1 Score: 296 bits (758), Expect = 4.130e-100
Identity = 150/174 (86.21%), Postives = 156/174 (89.66%), Query Frame = 3
Query:   45 GSENGVLENLVEITDPTEMNIAETELLEALYMQVFDAFPETLTFPTICRWHRPLAG*CVYRWAGQYRTVDMSKPNIRFASPLQIQRLTKEFEDQYLSRFAELPEMADEQLVAFLAETHVEFILIHPFREGNGRISRLLLDVMAVKAGAQPLDYSLWNRNKEYYFKAIQAGQGRD 566
            GSEN VL NLV IT PTEMNIAETELLEALY+QVFDAFPE LTF  IC+WHR   G  VYRWAGQYRTVDMSKPNIRFASP+QIQRLTKEFEDQ LSRFAELPEM DEQLVAFLAETHVEFILIHPFREGNGRISRLLLDVM VKAGAQPLDYSLWN +K+YYFKAIQAG+  D
Sbjct:   16 GSENRVLGNLVGITSPTEMNIAETELLEALYIQVFDAFPEMLTFQAICQWHRAWLG-NVYRWAGQYRTVDMSKPNIRFASPIQIQRLTKEFEDQCLSRFAELPEMGDEQLVAFLAETHVEFILIHPFREGNGRISRLLLDVMVVKAGAQPLDYSLWNEHKDYYFKAIQAGRDGD 188          
BLAST of mRNA_P-littoralis_Contig693.1.1 vs. uniprot
Match: A0A2M9TGB1_9GAMM (Cell filamentation protein Fic n=6 Tax=Halomonadaceae TaxID=28256 RepID=A0A2M9TGB1_9GAMM)

HSP 1 Score: 262 bits (670), Expect = 1.030e-86
Identity = 132/170 (77.65%), Postives = 145/170 (85.29%), Query Frame = 3
Query:   45 GSENGVLENLVEITDPTEMNIAETELLEALYMQVFDAFPETLTFPTICRWHRPLAG*CVYRWAGQYRTVDMSKPNIRFASPLQIQRLTKEFEDQYLSRFAELPEMADEQLVAFLAETHVEFILIHPFREGNGRISRLLLDVMAVKAGAQPLDYSLWNRNKEYYFKAIQAG 554
            GSE+ VL+NL  I DP +MNIAETELL ALY+QVFD FPET+ F  I  WHR   G  VY WAGQYRTVDMSKP+IRFASPLQI RL + FE+QYL+RFA LPEM DEQLV+FLAE HVEFILIHPFREGNGRISRLLLD+MAVKAGAQPLDYSLWN +K+YYFKAIQAG
Sbjct:   16 GSEDKVLKNLAGIDDPADMNIAETELLAALYIQVFDTFPETVDFKRIRHWHRAWLG-NVYDWAGQYRTVDMSKPDIRFASPLQIHRLAQAFENQYLARFATLPEMGDEQLVSFLAEMHVEFILIHPFREGNGRISRLLLDMMAVKAGAQPLDYSLWNEHKDYYFKAIQAG 184          
BLAST of mRNA_P-littoralis_Contig693.1.1 vs. uniprot
Match: A1U633_MARN8 (Filamentation induced by cAMP protein Fic n=4 Tax=Marinobacter TaxID=2742 RepID=A1U633_MARN8)

HSP 1 Score: 262 bits (670), Expect = 1.060e-86
Identity = 130/174 (74.71%), Postives = 147/174 (84.48%), Query Frame = 3
Query:   45 GSENGVLENLVEITDPTEMNIAETELLEALYMQVFDAFPETLTFPTICRWHRPLAG*CVYRWAGQYRTVDMSKPNIRFASPLQIQRLTKEFEDQYLSRFAELPEMADEQLVAFLAETHVEFILIHPFREGNGRISRLLLDVMAVKAGAQPLDYSLWNRNKEYYFKAIQAGQGRD 566
            GS+N VL NL  ITDP EMNI ET+LLE LY+QVFD FPE LTF T+C+WHR   G  VY WAGQ RTVDMSKPNIRFASP+QI +L ++FE +YL RFAELPEM DE+LVAFLAE HVEFILIHPFREGNGRISRLLLDVMA KAGA+PLDYSLW+ +K++YFKAIQAG+  D
Sbjct:   16 GSDNKVLRNLPGITDPEEMNIVETDLLEDLYLQVFDNFPEELTFETLCQWHRAWLG-NVYSWAGQSRTVDMSKPNIRFASPVQIPKLAEKFEARYLPRFAELPEMTDEELVAFLAEVHVEFILIHPFREGNGRISRLLLDVMAAKAGAEPLDYSLWDEHKDFYFKAIQAGRDGD 188          
BLAST of mRNA_P-littoralis_Contig693.1.1 vs. uniprot
Match: A0A2E5SED9_9GAMM (Cell filamentation protein Fic n=1 Tax=Oceanospirillales bacterium TaxID=1914300 RepID=A0A2E5SED9_9GAMM)

HSP 1 Score: 260 bits (665), Expect = 6.140e-86
Identity = 127/174 (72.99%), Postives = 147/174 (84.48%), Query Frame = 3
Query:   45 GSENGVLENLVEITDPTEMNIAETELLEALYMQVFDAFPETLTFPTICRWHRPLAG*CVYRWAGQYRTVDMSKPNIRFASPLQIQRLTKEFEDQYLSRFAELPEMADEQLVAFLAETHVEFILIHPFREGNGRISRLLLDVMAVKAGAQPLDYSLWNRNKEYYFKAIQAGQGRD 566
            GS N VL NL+E+TDP EMNIAETELL+ LY+QVFD FPE L+  T+C WHR   G  +Y WAGQYRTVDMSKP+I FASPLQI RL ++FE+ YL+RF  LP+M DE L+ FLAE+HVEFILIHPFREGNGRISRLLLDVMAVKAGAQPLDYSLW++NKE+YFK+IQAG+  D
Sbjct:   16 GSGNRVLRNLIEVTDPVEMNIAETELLQDLYIQVFDNFPEALSLHTLCEWHRLWLG-NIYSWAGQYRTVDMSKPDIFFASPLQIPRLARQFEENYLTRFDGLPDMDDEALITFLAESHVEFILIHPFREGNGRISRLLLDVMAVKAGAQPLDYSLWDKNKEFYFKSIQAGRDGD 188          
BLAST of mRNA_P-littoralis_Contig693.1.1 vs. uniprot
Match: A0A1Y0CZS2_9GAMM (Cell filamentation protein Fic n=1 Tax=Oceanisphaera avium TaxID=1903694 RepID=A0A1Y0CZS2_9GAMM)

HSP 1 Score: 252 bits (644), Expect = 9.610e-83
Identity = 124/174 (71.26%), Postives = 143/174 (82.18%), Query Frame = 3
Query:   45 GSENGVLENLVEITDPTEMNIAETELLEALYMQVFDAFPETLTFPTICRWHRPLAG*CVYRWAGQYRTVDMSKPNIRFASPLQIQRLTKEFEDQYLSRFAELPEMADEQLVAFLAETHVEFILIHPFREGNGRISRLLLDVMAVKAGAQPLDYSLWNRNKEYYFKAIQAGQGRD 566
            GS N VL N+++ITDP EM++AETELL  LY  VFD FP+ L+FP +  WHR   G  +Y WAGQYR+VDMSKPNIRFASPLQI +L + FE QYL+RF ELP   D+QLVAFLAE HVEFIL+HPFREGNGRISRLLLDVMAVKAGAQPLDYSLW+ +K++YFKAIQAG  RD
Sbjct:   16 GSNNQVLSNMLDITDPAEMSVAETELLAQLYFYVFDDFPQALSFPMLSFWHRAWLG-NLYPWAGQYRSVDMSKPNIRFASPLQIAKLAQSFEAQYLARFNELPTFNDQQLVAFLAEAHVEFILLHPFREGNGRISRLLLDVMAVKAGAQPLDYSLWDEHKDFYFKAIQAGLARD 188          
BLAST of mRNA_P-littoralis_Contig693.1.1 vs. uniprot
Match: A0A7Z1HJV0_9GAMM (Cell filamentation protein Fic n=8 Tax=Pseudoalteromonadaceae TaxID=267888 RepID=A0A7Z1HJV0_9GAMM)

HSP 1 Score: 187 bits (474), Expect = 6.340e-57
Identity = 96/177 (54.24%), Postives = 121/177 (68.36%), Query Frame = 3
Query:   45 GSENGVLENLVEITDPTEMNIAETELLEALYMQVF---DAFPETLTFPTICRWHRPLAG*CVYRWAGQYRTVDMSKPNIRFASPLQIQRLTKEFEDQYLSRFAELPEMADEQLVAFLAETHVEFILIHPFREGNGRISRLLLDVMAVKAGAQPLDYSLWNRNKEYYFKAIQAGQGRD 566
            GSE  VL N + I D  EM+  E  LL  LY ++F   +   +  +F  +  WHR   G  VY WAG+ R+VDM K   +F SPLQI+R    FED+YLSRF  LPEM DE+LV+FLA++HVEFILIHPFREGNGR+SRLL+D +  KAG   LDYSLW+ +K++Y K+IQAG  RD
Sbjct:   16 GSEKLVLANKLAIVDAAEMDDVEAILLVKLYEKIFTTPEPEEDVFSFQNVANWHRQWLG-NVYEWAGKIRSVDMGKGGFQFMSPLQIERHISVFEDEYLSRFNNLPEMTDEELVSFLAQSHVEFILIHPFREGNGRVSRLLMDFLCSKAGKGTLDYSLWDEHKDFYIKSIQAGVNRD 191          
BLAST of mRNA_P-littoralis_Contig693.1.1 vs. uniprot
Match: A0A8E2Q2D9_9GAMM (Cell filamentation protein Fic n=6 Tax=Pseudoalteromonas TaxID=53246 RepID=A0A8E2Q2D9_9GAMM)

HSP 1 Score: 186 bits (473), Expect = 8.980e-57
Identity = 96/177 (54.24%), Postives = 124/177 (70.06%), Query Frame = 3
Query:   45 GSENGVLENLVEITDPTEMNIAETELLEALYMQVF---DAFPETLTFPTICRWHRPLAG*CVYRWAGQYRTVDMSKPNIRFASPLQIQRLTKEFEDQYLSRFAELPEMADEQLVAFLAETHVEFILIHPFREGNGRISRLLLDVMAVKAGAQPLDYSLWNRNKEYYFKAIQAGQGRD 566
            GSE  VL N + I D TEM+  E  LL  LY ++F   D+   T +F  I  WHR   G  VY WAG+ R++DM K   +F SPLQI++  + FE +YLSRF  LPEM DE+LV+F+A++HVEFILIHPFREGNGRISRLL+D +  KAG   LDYSLW+ +K++YFK+IQAG  ++
Sbjct:   16 GSERLVLANKLAIVDETEMDDIEAVLLVKLYEKIFTTTDSKNGTFSFQNIANWHRQWLG-NVYEWAGKIRSIDMGKGGFQFMSPLQIEKNIRLFEGEYLSRFNNLPEMTDEELVSFIAQSHVEFILIHPFREGNGRISRLLMDFLCSKAGKGTLDYSLWDEHKDFYFKSIQAGVNKN 191          
BLAST of mRNA_P-littoralis_Contig693.1.1 vs. uniprot
Match: UPI0004001D36 (Fic family protein n=1 Tax=Oceanobacter kriegii TaxID=64972 RepID=UPI0004001D36)

HSP 1 Score: 186 bits (472), Expect = 1.200e-56
Identity = 91/168 (54.17%), Postives = 125/168 (74.40%), Query Frame = 3
Query:   51 ENGVLENLVEITDPTEMNIAETELLEALYMQVFDAFPETLTFPTICRWHRPLAG*CVYRWAGQYRTVDMSKPNIRFASPLQIQRLTKEFEDQYLSRFAELPEMADEQLVAFLAETHVEFILIHPFREGNGRISRLLLDVMAVKAGAQPLDYSLWNRNKEYYFKAIQAG 554
            E+GVL+N + +T   +++IAETELLEALY  V +  P+ LTF  IC WHR   G  +Y WAG+ R+V+MSK +  FA+  Q+QRL + FE +YL  F  L +M D+ LV +LA +HVEFILIHPFREGNGR+SRLLL+V  V+AG +P+D+ LW+ +K++YF++IQAG
Sbjct:   18 EDGVLKNSLGLTLKEDIDIAETELLEALYFGVLNDVPDELTFSDICTWHRRWLG-NLYEWAGKLRSVNMSKGDFHFAAAGQLQRLCEGFESEYLQNFGSLFQMDDDSLVGYLARSHVEFILIHPFREGNGRLSRLLLNVQLVQAGLEPMDFQLWDDHKDFYFRSIQAG 184          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig693.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6F8U1X0_9GAMM1.510e-10286.78Cell division protein Fic n=1 Tax=Halomonas hydrot... [more]
A0A060B417_9GAMM2.910e-10084.57Cell division protein Fic n=2 Tax=Halomonas TaxID=... [more]
A0A1U9R541_9GAMM4.130e-10086.21Cell filamentation protein Fic n=1 Tax=Halomonas s... [more]
A0A2M9TGB1_9GAMM1.030e-8677.65Cell filamentation protein Fic n=6 Tax=Halomonadac... [more]
A1U633_MARN81.060e-8674.71Filamentation induced by cAMP protein Fic n=4 Tax=... [more]
A0A2E5SED9_9GAMM6.140e-8672.99Cell filamentation protein Fic n=1 Tax=Oceanospiri... [more]
A0A1Y0CZS2_9GAMM9.610e-8371.26Cell filamentation protein Fic n=1 Tax=Oceanisphae... [more]
A0A7Z1HJV0_9GAMM6.340e-5754.24Cell filamentation protein Fic n=8 Tax=Pseudoalter... [more]
A0A8E2Q2D9_9GAMM8.980e-5754.24Cell filamentation protein Fic n=6 Tax=Pseudoalter... [more]
UPI0004001D361.200e-5654.17Fic family protein n=1 Tax=Oceanobacter kriegii Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig693contigP-littoralis_Contig693:1..566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog351348.Maqu_3381
Preferred namefic
PFAMsFic
Model size566
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K04095
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.88e-52
EggNOG OGsCOG2184@1|root,COG2184@2|Bacteria,1QREW@1224|Proteobacteria,1RNED@1236|Gammaproteobacteria,46DN4@72275|Alteromonadaceae
DescriptionFic/DOC family
Cds size312
COG categoryD
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791436.981197-CDS-P-littoralis_Contig693:0..3121680791436.981197-CDS-P-littoralis_Contig693:0..312Pylaiella littoralis U1_48CDSP-littoralis_Contig693 1..312 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791436.9964085-UTR-P-littoralis_Contig693:312..5661680791436.9964085-UTR-P-littoralis_Contig693:312..566Pylaiella littoralis U1_48UTRP-littoralis_Contig693 313..566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig693.1.1prot_P-littoralis_Contig693.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig693 1..312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig693.1.1

>prot_P-littoralis_Contig693.1.1 ID=prot_P-littoralis_Contig693.1.1|Name=mRNA_P-littoralis_Contig693.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MSKPNIRFASPLQIQRLTKEFEDQYLSRFAELPEMADEQLVAFLAETHVE
FILIHPFREGNGRISRLLLDVMAVKAGAQPLDYSLWNRNKEYYFKAIQAG
QGRD
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mRNA from alignment at P-littoralis_Contig693:1..566-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig693.1.1 ID=mRNA_P-littoralis_Contig693.1.1|Name=mRNA_P-littoralis_Contig693.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=566bp|location=Sequence derived from alignment at P-littoralis_Contig693:1..566- (Pylaiella littoralis U1_48)
ATGAGTCGCTATGTTGTTTCTGGCAGTGAAGGCGAGTATCAACCGGCTCG GAAAATGGGGTGCTAGAAAACCTCGTTGAAATCACTGACCCAACAGAGAT GAATATTGCAGAAACGGAGCTGCTTGAGGCTCTCTATATGCAGGTCTTTG ACGCCTTTCCTGAAACGCTCACTTTCCCGACAATTTGTCGGTGGCATAGG CCTTTGGCTGGGTAATGTGTGTATCGTTGGGCGGGGCAATATCGAACCGT TGATATGTCCAAGCCGAATATTCGGTTTGCATCGCCGCTACAGATTCAAA GGCTGACAAAAGAGTTTGAGGATCAGTATCTCTCACGCTTTGCTGAACTA CCGGAGATGGCTGACGAACAACTGGTCGCATTTCTTGCCGAAACCCATGT TGAGTTCATACTGATTCACCCATTCCGAGAGGGCAACGGACGCATATCAC GTTTGCTGCTGGATGTGATGGCCGTCAAAGCGGGTGCTCAACCACTCGAT TACAGCTTATGGAATAGGAACAAGGAGTACTACTTCAAAGCGATTCAGGC CGGGCAAGGCCGTGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig693:1..566-

>mRNA_P-littoralis_Contig693.1.1 ID=mRNA_P-littoralis_Contig693.1.1|Name=mRNA_P-littoralis_Contig693.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig693:1..566- (Pylaiella littoralis U1_48)
ATGTCCAAGCCGAATATTCGGTTTGCATCGCCGCTACAGATTCAAAGGCT
GACAAAAGAGTTTGAGGATCAGTATCTCTCACGCTTTGCTGAACTACCGG
AGATGGCTGACGAACAACTGGTCGCATTTCTTGCCGAAACCCATGTTGAG
TTCATACTGATTCACCCATTCCGAGAGGGCAACGGACGCATATCACGTTT
GCTGCTGGATGTGATGGCCGTCAAAGCGGGTGCTCAACCACTCGATTACA
GCTTATGGAATAGGAACAAGGAGTACTACTTCAAAGCGATTCAGGCCGGG
CAAGGCCGTGAC
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