mRNA_P-littoralis_Contig692.19.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig692.19.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE) HSP 1 Score: 173 bits (439), Expect = 3.000e-49 Identity = 88/182 (48.35%), Postives = 114/182 (62.64%), Query Frame = 1
Query: 7 PKHRSTLIRRQRRSWAAYSKPLLADGTFRSSFRMDHDDFMDLVDMLRPELERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPG 552
P+ R +RR+RRSW Y+KP++ DGTFR FRMD+ +F L DMLRP+LERN MG+LRNG +PVE+Q+ LR+LAGG + ++ G+VIA+STAY RVI AIN L+C WPE + D + RSTNGVI CVGAMDGLF + L H + ++GF G
Sbjct: 39 PQTRDKFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGM-YRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQG 219
BLAST of mRNA_P-littoralis_Contig692.19.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE) HSP 1 Score: 165 bits (418), Expect = 4.470e-46 Identity = 81/151 (53.64%), Postives = 106/151 (70.20%), Query Frame = 1
Query: 7 PKHRSTLIRRQRRSWAAYSKPLLADGTFRSSFRMDHDDFMDLVDMLRPELERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGLF 459
P HR + R+RRS+ Y +P++ D TFR FRMD+ DFM L D+LRP+L+R+ MG+LRNGA+PVE+Q+ TLR+LAGG + ++ +VIAKSTAY RVI AIN L C+WP D ++ A + RSTNGVI +CVGAMDGLF
Sbjct: 43 PAHRGNFVYRERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGD-DAEAQAELYRRRSTNGVIRRCVGAMDGLF 192
BLAST of mRNA_P-littoralis_Contig692.19.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE) HSP 1 Score: 159 bits (403), Expect = 4.030e-44 Identity = 80/150 (53.33%), Postives = 101/150 (67.33%), Query Frame = 1
Query: 10 KHRSTLIRRQRRSWAAYSKPLLADGTFRSSFRMDHDDFMDLVDMLRPELERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGLF 459
++RSTL+ R+RR + Y KP+L D TF FRM++DDF LVD LRP L++N G LRNGA+PVEYQV TLRWLAGG + + GHVIA+STAY VI A+NAC L C+WPE + D + + + V+ KCVGAMDGLF
Sbjct: 44 RNRSTLVARERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DLPEPPSFSATAALMDVVRKCVGAMDGLF 192
BLAST of mRNA_P-littoralis_Contig692.19.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE) HSP 1 Score: 155 bits (392), Expect = 4.410e-43 Identity = 78/150 (52.00%), Postives = 97/150 (64.67%), Query Frame = 1
Query: 10 KHRSTLIRRQRRSWAAYSKPLLADGTFRSSFRMDHDDFMDLVDMLRPELERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGLF 459
++RSTL+ R+RR + + KPLL D TF FRM++DDF L+D LRP L +N MG LR GA+PVEYQ+ TLRWLAGG + + GHVIA+STAY VI A+NAC L C+WPE + D V+ KCVGAMDGLF
Sbjct: 44 RNRSTLVARERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARMD---------------VVRKCVGAMDGLF 178
BLAST of mRNA_P-littoralis_Contig692.19.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE) HSP 1 Score: 121 bits (304), Expect = 3.360e-32 Identity = 65/127 (51.18%), Postives = 78/127 (61.42%), Query Frame = 1
Query: 172 MGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPG 552
MG LRNGA+PVEYQV TLRWLAGG + + GHVIA+STAY VI A+NAC L C+WPE + D A F +RS+ G + G+ L P +AE G AQL+LQ QE R ELPG
Sbjct: 1 MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAAGAAELFRNRSSYGCRPEVRGSHGWLVCPDDQAEREGGRRAQLMLQRAQERLRHELPG 126
BLAST of mRNA_P-littoralis_Contig692.19.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE) HSP 1 Score: 117 bits (294), Expect = 1.460e-28 Identity = 58/94 (61.70%), Postives = 68/94 (72.34%), Query Frame = 1
Query: 16 RSTLIRRQRRSWAAYSKPLLADGTFRSSFRMDHDDFMDLVDMLRPELERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAY 297
RSTL+ R RR + Y KP+L D TF FRM++DDF LVD LRP L++N MG LRNGA+PVEYQV TLRWLAGG + GHVIA+STAY
Sbjct: 46 RSTLVARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAY 139
BLAST of mRNA_P-littoralis_Contig692.19.1 vs. uniprot
Match: G4ZVV4_PHYSP (DDE Tnp4 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZVV4_PHYSP) HSP 1 Score: 71.2 bits (173), Expect = 8.930e-12 Identity = 44/119 (36.97%), Postives = 63/119 (52.94%), Query Frame = 1
Query: 106 MDHDDFMDLVDMLRPELERNPHMGSLRNGAVPVEYQV--GNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGL 456
MD F LVDMLRP L + M + R G P+ +V TLR+LAGG LDI+ ++ ++ Y+ + I AI C L + P + + AA F S+ GV+ CVG +DG+
Sbjct: 1 MDGAHFNRLVDMLRPSLSVDGVMSTRRTGVAPISEEVVLHCTLRYLAGGSYLDIRDVAQLSVASFYRCLNKGIFAILNCTELAIQLPTTPREIECAAAEFAKSSSEGVLDGCVGCVDGM 119
BLAST of mRNA_P-littoralis_Contig692.19.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 1.660e-5 Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 2
Query: 452 GFFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQA 553
G FVR ++P++++ EPN +Y+GHKKGFGMNFQA
Sbjct: 179 GLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQA 212
BLAST of mRNA_P-littoralis_Contig692.19.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE) HSP 1 Score: 50.8 bits (120), Expect = 6.350e-5 Identity = 19/31 (61.29%), Postives = 27/31 (87.10%), Query Frame = 2
Query: 458 FVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQ 550
FVR ++P++++ EPN +Y+GHKKGFGMNFQ
Sbjct: 95 FVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ 125 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig692.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig692.19.1 >prot_P-littoralis_Contig692.19.1 ID=prot_P-littoralis_Contig692.19.1|Name=mRNA_P-littoralis_Contig692.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp MDHDDFMDLVDMLRPELERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLback to top mRNA from alignment at P-littoralis_Contig692:95115..95667- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig692.19.1 ID=mRNA_P-littoralis_Contig692.19.1|Name=mRNA_P-littoralis_Contig692.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=553bp|location=Sequence derived from alignment at P-littoralis_Contig692:95115..95667- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig692:95115..95667- >mRNA_P-littoralis_Contig692.19.1 ID=mRNA_P-littoralis_Contig692.19.1|Name=mRNA_P-littoralis_Contig692.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig692:95115..95667- (Pylaiella littoralis U1_48)back to top |