mRNA_P-littoralis_Contig692.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig692.19.1
Unique NamemRNA_P-littoralis_Contig692.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig692.19.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 3.000e-49
Identity = 88/182 (48.35%), Postives = 114/182 (62.64%), Query Frame = 1
Query:    7 PKHRSTLIRRQRRSWAAYSKPLLADGTFRSSFRMDHDDFMDLVDMLRPELERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPG 552
            P+ R   +RR+RRSW  Y+KP++ DGTFR  FRMD+ +F  L DMLRP+LERN  MG+LRNG +PVE+Q+   LR+LAGG + ++  G+VIA+STAY    RVI AIN    L+C WPE +   D     +  RSTNGVI  CVGAMDGLF    +  L  H   +      ++GF     G
Sbjct:   39 PQTRDKFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGM-YRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQG 219          
BLAST of mRNA_P-littoralis_Contig692.19.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 4.470e-46
Identity = 81/151 (53.64%), Postives = 106/151 (70.20%), Query Frame = 1
Query:    7 PKHRSTLIRRQRRSWAAYSKPLLADGTFRSSFRMDHDDFMDLVDMLRPELERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGLF 459
            P HR   + R+RRS+  Y +P++ D TFR  FRMD+ DFM L D+LRP+L+R+  MG+LRNGA+PVE+Q+  TLR+LAGG + ++   +VIAKSTAY    RVI AIN    L C+WP    D ++ A  +  RSTNGVI +CVGAMDGLF
Sbjct:   43 PAHRGNFVYRERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGD-DAEAQAELYRRRSTNGVIRRCVGAMDGLF 192          
BLAST of mRNA_P-littoralis_Contig692.19.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 4.030e-44
Identity = 80/150 (53.33%), Postives = 101/150 (67.33%), Query Frame = 1
Query:   10 KHRSTLIRRQRRSWAAYSKPLLADGTFRSSFRMDHDDFMDLVDMLRPELERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGLF 459
            ++RSTL+ R+RR +  Y KP+L D TF   FRM++DDF  LVD LRP L++N   G LRNGA+PVEYQV  TLRWLAGG + +   GHVIA+STAY     VI A+NAC  L C+WPE + D     +   + +   V+ KCVGAMDGLF
Sbjct:   44 RNRSTLVARERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DLPEPPSFSATAALMDVVRKCVGAMDGLF 192          
BLAST of mRNA_P-littoralis_Contig692.19.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 4.410e-43
Identity = 78/150 (52.00%), Postives = 97/150 (64.67%), Query Frame = 1
Query:   10 KHRSTLIRRQRRSWAAYSKPLLADGTFRSSFRMDHDDFMDLVDMLRPELERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGLF 459
            ++RSTL+ R+RR +  + KPLL D TF   FRM++DDF  L+D LRP L +N  MG LR GA+PVEYQ+  TLRWLAGG + +   GHVIA+STAY     VI A+NAC  L C+WPE + D               V+ KCVGAMDGLF
Sbjct:   44 RNRSTLVARERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARMD---------------VVRKCVGAMDGLF 178          
BLAST of mRNA_P-littoralis_Contig692.19.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 3.360e-32
Identity = 65/127 (51.18%), Postives = 78/127 (61.42%), Query Frame = 1
Query:  172 MGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPG 552
            MG LRNGA+PVEYQV  TLRWLAGG + +   GHVIA+STAY     VI A+NAC  L C+WPE + D    A  F +RS+ G   +  G+   L  P  +AE  G   AQL+LQ  QE  R ELPG
Sbjct:    1 MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAAGAAELFRNRSSYGCRPEVRGSHGWLVCPDDQAEREGGRRAQLMLQRAQERLRHELPG 126          
BLAST of mRNA_P-littoralis_Contig692.19.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.460e-28
Identity = 58/94 (61.70%), Postives = 68/94 (72.34%), Query Frame = 1
Query:   16 RSTLIRRQRRSWAAYSKPLLADGTFRSSFRMDHDDFMDLVDMLRPELERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAY 297
            RSTL+ R RR +  Y KP+L D TF   FRM++DDF  LVD LRP L++N  MG LRNGA+PVEYQV  TLRWLAGG   +   GHVIA+STAY
Sbjct:   46 RSTLVARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAY 139          
BLAST of mRNA_P-littoralis_Contig692.19.1 vs. uniprot
Match: G4ZVV4_PHYSP (DDE Tnp4 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZVV4_PHYSP)

HSP 1 Score: 71.2 bits (173), Expect = 8.930e-12
Identity = 44/119 (36.97%), Postives = 63/119 (52.94%), Query Frame = 1
Query:  106 MDHDDFMDLVDMLRPELERNPHMGSLRNGAVPVEYQV--GNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGL 456
            MD   F  LVDMLRP L  +  M + R G  P+  +V    TLR+LAGG  LDI+    ++ ++ Y+   + I AI  C  L  + P    + +  AA F   S+ GV+  CVG +DG+
Sbjct:    1 MDGAHFNRLVDMLRPSLSVDGVMSTRRTGVAPISEEVVLHCTLRYLAGGSYLDIRDVAQLSVASFYRCLNKGIFAILNCTELAIQLPTTPREIECAAAEFAKSSSEGVLDGCVGCVDGM 119          
BLAST of mRNA_P-littoralis_Contig692.19.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.660e-5
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 2
Query:  452 GFFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQA 553
            G FVR ++P++++  EPN +Y+GHKKGFGMNFQA
Sbjct:  179 GLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQA 212          
BLAST of mRNA_P-littoralis_Contig692.19.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 6.350e-5
Identity = 19/31 (61.29%), Postives = 27/31 (87.10%), Query Frame = 2
Query:  458 FVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQ 550
            FVR ++P++++  EPN +Y+GHKKGFGMNFQ
Sbjct:   95 FVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ 125          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig692.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5K3F2_9PHAE3.000e-4948.35DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE4.470e-4653.64DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JJA1_9PHAE4.030e-4453.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS8_9PHAE4.410e-4352.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5J9B3_9PHAE3.360e-3251.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K540_9PHAE1.460e-2861.70DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
G4ZVV4_PHYSP8.930e-1236.97DDE Tnp4 domain-containing protein n=1 Tax=Phytoph... [more]
A0A6H5L6B6_9PHAE1.660e-561.76DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5KD49_9PHAE6.350e-561.29Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig692contigP-littoralis_Contig692:95115..95667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog72019.SARC_10743T0
Model size553
Max annot lvl72019.SARC_10743T0|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.42e-18
EggNOG OGs2D5T8@1|root,2SZJJ@2759|Eukaryota
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791436.5732775-UTR-P-littoralis_Contig692:95114..951691680791436.5732775-UTR-P-littoralis_Contig692:95114..95169Pylaiella littoralis U1_48UTRP-littoralis_Contig692 95115..95169 -
1680791436.5987346-UTR-P-littoralis_Contig692:95562..956671680791436.5987346-UTR-P-littoralis_Contig692:95562..95667Pylaiella littoralis U1_48UTRP-littoralis_Contig692 95563..95667 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791436.583932-CDS-P-littoralis_Contig692:95169..955621680791436.583932-CDS-P-littoralis_Contig692:95169..95562Pylaiella littoralis U1_48CDSP-littoralis_Contig692 95170..95562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig692.19.1prot_P-littoralis_Contig692.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig692 95170..95562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig692.19.1

>prot_P-littoralis_Contig692.19.1 ID=prot_P-littoralis_Contig692.19.1|Name=mRNA_P-littoralis_Contig692.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
MDHDDFMDLVDMLRPELERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQML
DIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNS
RSTNGVIAKCVGAMDGLFRPHPEAELPGHT*
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mRNA from alignment at P-littoralis_Contig692:95115..95667-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig692.19.1 ID=mRNA_P-littoralis_Contig692.19.1|Name=mRNA_P-littoralis_Contig692.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=553bp|location=Sequence derived from alignment at P-littoralis_Contig692:95115..95667- (Pylaiella littoralis U1_48)
CAGAAACCGAAGCACCGCAGCACGCTGATCCGGCGTCAAAGGCGAAGCTG GGCGGCTTACAGCAAGCCCCTCCTGGCAGACGGGACCTTCAGATCGAGTT TCCGCATGGACCACGACGACTTCATGGACCTGGTGGATATGCTCCGCCCT GAACTGGAGAGAAACCCTCACATGGGGAGCCTTCGCAACGGTGCGGTCCC TGTAGAGTACCAGGTCGGGAATACTCTGCGGTGGTTGGCTGGTGGTCAAA TGCTCGACATCAAGCAAGGCCATGTGATCGCGAAGAGCACGGCGTACCAG ACGGCCGTCCGTGTCATCAAGGCGATCAATGCCTGTGAGGCGCTGGAATG CCGATGGCCCGAGAAACAGACGGATTACGACAGCATCGCGGCCGGGTTCA ACAGCCGCAGCACGAACGGTGTGATCGCCAAGTGCGTGGGAGCCATGGAC GGGCTTTTTCGTCCGCACCCTGAGGCCGAACTCCCGGGACACACATGAGC CCAACTCCTTCTACAGTGGCCACAAGAAGGGTTTCGGGATGAACTTCCAG GCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig692:95115..95667-

>mRNA_P-littoralis_Contig692.19.1 ID=mRNA_P-littoralis_Contig692.19.1|Name=mRNA_P-littoralis_Contig692.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig692:95115..95667- (Pylaiella littoralis U1_48)
ATGGACCACGACGACTTCATGGACCTGGTGGATATGCTCCGCCCTGAACT
GGAGAGAAACCCTCACATGGGGAGCCTTCGCAACGGTGCGGTCCCTGTAG
AGTACCAGGTCGGGAATACTCTGCGGTGGTTGGCTGGTGGTCAAATGCTC
GACATCAAGCAAGGCCATGTGATCGCGAAGAGCACGGCGTACCAGACGGC
CGTCCGTGTCATCAAGGCGATCAATGCCTGTGAGGCGCTGGAATGCCGAT
GGCCCGAGAAACAGACGGATTACGACAGCATCGCGGCCGGGTTCAACAGC
CGCAGCACGAACGGTGTGATCGCCAAGTGCGTGGGAGCCATGGACGGGCT
TTTTCGTCCGCACCCTGAGGCCGAACTCCCGGGACACACATGA
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