mRNA_P-littoralis_Contig1172.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1172.5.1
Unique NamemRNA_P-littoralis_Contig1172.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Match: A0A6H5JNV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV8_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.820e-29
Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = 1
Query:    1 SVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMQEDLEAFDIVVEKKEG-WEASAKRAHEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRE 330
            ++EATVRKRRLCFAGFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  EK+ G W+ SAK +  WY+++++GA  F  +W ++E + S  R+R RE
Sbjct:   63 TIEATVRKRRLCFAGFVLRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRARE 173          
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Match: A0A6H5L2Q0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q0_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 6.510e-28
Identity = 57/108 (52.78%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 SVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMQEDLEAFDIVVEKKEG-WEASAKRAHEWYDRIDEGARRFTDEWLKKEGDLSETRRR 321
            ++EATVRKRRLCFAGFV RM+D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  EK+ G W+ SAK    WY+++++GA  F  +W ++E + S  R+R
Sbjct:   79 TIEATVRKRRLCFAGFVMRMKDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKRQR 186          
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Match: A0A6H5LD24_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD24_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 4.420e-27
Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = 1
Query:    1 SVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMQEDLEAFDIVVEKKEG-WEASAKRAHEWYDRIDEGARRFTDEWLKKEGDLSETRRRKR 327
            ++EATVRKRRLCFAGFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF +  EK+ G W+ SAK    WYD+I++GA  F  +W ++E + S  R+R R
Sbjct:  373 TIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAEASAKRQRAR 482          
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 7.240e-27
Identity = 58/114 (50.88%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    1 SVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMQEDLEAFDIVVEKKEG-WEASAKRAHEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRERDA 339
            ++EATVRKRRLCFAGFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  EK+ G W+ SAK    WY+++++ A  F  +W ++E + S   +R RE +A
Sbjct:   79 TIEATVRKRRLCFAGFVMRMEDSRLPKHMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDVATWFMRKWHRQEAETSAKHQRAREAEA 192          
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Match: A0A6H5JYX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX0_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 9.270e-27
Identity = 60/115 (52.17%), Postives = 79/115 (68.70%), Query Frame = 1
Query:    1 SVEATVRKRRLCFAGFVA-RMRDERLPKIALLGELQGGARYLGGQEFDWLRRMQEDLEAFDIVVEKKEG-WEASAKRAHEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRERDA 339
            ++EATVRKRRLCFAGFV  RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  EK+ G W+ SAK    WY++I++GA     +W ++E + S  R+R RE +A
Sbjct:   77 TIEATVRKRRLCFAGFVVVRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKGPEVWYNKIEDGAAWLMRKWHRQEAEASAKRQRARETEA 191          
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.060e-26
Identity = 59/114 (51.75%), Postives = 80/114 (70.18%), Query Frame = 1
Query:    1 SVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMQEDLEAFDIVVEKKEG-WEASAKRAHEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRERDA 339
            ++EATVRKRRLCFAGFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  EK+ G W+ SAK    WY+++++GA  F  +W ++E + S  R+R +E +A
Sbjct:  697 TIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMSDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAKEAEA 810          
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Match: A0A6H5K0C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C0_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.220e-26
Identity = 55/102 (53.92%), Postives = 73/102 (71.57%), Query Frame = 1
Query:    1 SVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMQEDLEAFDIVVEKKEG-WEASAKRAHEWYDRIDEGARRFTDEWLKKEGDL 303
            ++EATVRKRRLCFAGFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  EK+ G W+ SAK    WY+++ +GA RF  +W ++E ++
Sbjct:  227 TIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVKDGAARFMRKWHRQEAEV 328          
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.450e-26
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 1
Query:    1 SVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMQEDLEAFDIVVEKKEG-WEASAKRAHEWYDRIDEGARRFTDEWLKKEGD 300
            ++EATVRKRRLCFAGFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF +  EK+ G W+ SAK    WYD+I++GA  F  +W ++E +
Sbjct:  164 TIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAE 264          
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Match: A0A6H5JUA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA0_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.710e-26
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 1
Query:    1 SVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMQEDLEAFDIVVEKKEG-WEASAKRAHEWYDRIDEGARRFTDEWLKKEGDLS 306
            ++EATVRKRRLCFAGFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  EK+ G W+ SAK    WY+++++GA  F  +W ++E + S
Sbjct:  139 TIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKGPEVWYNKVEDGAAWFMRKWHRQEAEAS 241          
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Match: A0A6H5L649_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L649_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.810e-26
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    1 SVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMQEDLEAFDIVVEKKEG-WEASAKRAHEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRE 330
            ++EATVRKRRLCFAGFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  EK+ G W+ SAK    WY ++++GA  F  +W ++E + S  R+R+ E
Sbjct:  183 TIEATVRKRRLCFAGFVMRMEDNRLPKHILLGAMAGGVGYRGGQEDDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYHKVEDGAAWFMRKWHRQEAEESAKRQREGE 293          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNV8_9PHAE2.820e-2953.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2Q0_9PHAE6.510e-2852.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LD24_9PHAE4.420e-2754.55Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KGF6_9PHAE7.240e-2750.88Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYX0_9PHAE9.270e-2752.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGX2_9PHAE1.060e-2651.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0C0_9PHAE1.220e-2653.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSH7_9PHAE1.450e-2655.45Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUA0_9PHAE1.710e-2653.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L649_9PHAE1.810e-2652.25Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1172contigP-littoralis_Contig1172:59782..60138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog28377.ENSACAP00000022069
Model size357
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.49e-06
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria,48EZY@7711|Chordata,49BMJ@7742|Vertebrata
DescriptionRibonuclease H protein
Cds size357
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789491.382131-CDS-P-littoralis_Contig1172:59781..601381680789491.382131-CDS-P-littoralis_Contig1172:59781..60138Pylaiella littoralis U1_48CDSP-littoralis_Contig1172 59782..60138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1172.5.1prot_P-littoralis_Contig1172.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1172 59782..60138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1172.5.1

>prot_P-littoralis_Contig1172.5.1 ID=prot_P-littoralis_Contig1172.5.1|Name=mRNA_P-littoralis_Contig1172.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
SVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLR
RMQEDLEAFDIVVEKKEGWEASAKRAHEWYDRIDEGARRFTDEWLKKEGD
LSETRRRKRERDAAERQAL
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mRNA from alignment at P-littoralis_Contig1172:59782..60138+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1172.5.1 ID=mRNA_P-littoralis_Contig1172.5.1|Name=mRNA_P-littoralis_Contig1172.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig1172:59782..60138+ (Pylaiella littoralis U1_48)
AGCGTTGAGGCCACCGTGCGCAAGCGGCGACTGTGCTTCGCAGGATTCGT TGCGCGCATGAGAGACGAGAGACTCCCGAAAATTGCTCTATTGGGAGAAT TGCAGGGGGGAGCGAGGTATCTGGGGGGGCAAGAGTTTGACTGGCTGAGG CGAATGCAGGAGGACCTCGAAGCGTTCGACATCGTGGTCGAAAAAAAGGA GGGGTGGGAGGCAAGTGCCAAGAGAGCTCACGAGTGGTACGACAGGATCG ACGAGGGTGCGCGGCGGTTCACGGACGAGTGGCTCAAGAAAGAGGGAGAC CTATCAGAGACACGTCGACGGAAAAGGGAGAGGGACGCGGCTGAAAGGCA GGCCTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1172:59782..60138+

>mRNA_P-littoralis_Contig1172.5.1 ID=mRNA_P-littoralis_Contig1172.5.1|Name=mRNA_P-littoralis_Contig1172.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig1172:59782..60138+ (Pylaiella littoralis U1_48)
AGCGTTGAGGCCACCGTGCGCAAGCGGCGACTGTGCTTCGCAGGATTCGT
TGCGCGCATGAGAGACGAGAGACTCCCGAAAATTGCTCTATTGGGAGAAT
TGCAGGGGGGAGCGAGGTATCTGGGGGGGCAAGAGTTTGACTGGCTGAGG
CGAATGCAGGAGGACCTCGAAGCGTTCGACATCGTGGTCGAAAAAAAGGA
GGGGTGGGAGGCAAGTGCCAAGAGAGCTCACGAGTGGTACGACAGGATCG
ACGAGGGTGCGCGGCGGTTCACGGACGAGTGGCTCAAGAAAGAGGGAGAC
CTATCAGAGACACGTCGACGGAAAAGGGAGAGGGACGCGGCTGAAAGGCA
GGCCTTG
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