mRNA_P-littoralis_Contig1172.5.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Match: A0A6H5JNV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV8_9PHAE) HSP 1 Score: 114 bits (285), Expect = 2.820e-29 Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = 1
Query: 1 SVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMQEDLEAFDIVVEKKEG-WEASAKRAHEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRE 330
++EATVRKRRLCFAGFV RM D RLPK LLG + GG Y GGQE DW+ R+ EDL AF++ EK+ G W+ SAK + WY+++++GA F +W ++E + S R+R RE
Sbjct: 63 TIEATVRKRRLCFAGFVLRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRARE 173
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Match: A0A6H5L2Q0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q0_9PHAE) HSP 1 Score: 111 bits (277), Expect = 6.510e-28 Identity = 57/108 (52.78%), Postives = 77/108 (71.30%), Query Frame = 1
Query: 1 SVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMQEDLEAFDIVVEKKEG-WEASAKRAHEWYDRIDEGARRFTDEWLKKEGDLSETRRR 321
++EATVRKRRLCFAGFV RM+D RLPK LLG + GG Y GGQE DW+ R+ EDL AF++ EK+ G W+ SAK WY+++++GA F +W ++E + S R+R
Sbjct: 79 TIEATVRKRRLCFAGFVMRMKDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKRQR 186
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Match: A0A6H5LD24_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD24_9PHAE) HSP 1 Score: 113 bits (283), Expect = 4.420e-27 Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = 1
Query: 1 SVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMQEDLEAFDIVVEKKEG-WEASAKRAHEWYDRIDEGARRFTDEWLKKEGDLSETRRRKR 327
++EATVRKRRLCFAGFV RM D RLPK LLG + GG Y GGQE DW+ R+ EDL AF + EK+ G W+ SAK WYD+I++GA F +W ++E + S R+R R
Sbjct: 373 TIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAEASAKRQRAR 482
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE) HSP 1 Score: 108 bits (270), Expect = 7.240e-27 Identity = 58/114 (50.88%), Postives = 78/114 (68.42%), Query Frame = 1
Query: 1 SVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMQEDLEAFDIVVEKKEG-WEASAKRAHEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRERDA 339
++EATVRKRRLCFAGFV RM D RLPK LLG + GG Y GGQE DW+ R+ EDL AF++ EK+ G W+ SAK WY+++++ A F +W ++E + S +R RE +A
Sbjct: 79 TIEATVRKRRLCFAGFVMRMEDSRLPKHMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDVATWFMRKWHRQEAETSAKHQRAREAEA 192
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Match: A0A6H5JYX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX0_9PHAE) HSP 1 Score: 107 bits (268), Expect = 9.270e-27 Identity = 60/115 (52.17%), Postives = 79/115 (68.70%), Query Frame = 1
Query: 1 SVEATVRKRRLCFAGFVA-RMRDERLPKIALLGELQGGARYLGGQEFDWLRRMQEDLEAFDIVVEKKEG-WEASAKRAHEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRERDA 339
++EATVRKRRLCFAGFV RM D RLPK LLG + GG Y GGQE DW+ R+ EDL AF++ EK+ G W+ SAK WY++I++GA +W ++E + S R+R RE +A
Sbjct: 77 TIEATVRKRRLCFAGFVVVRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKGPEVWYNKIEDGAAWLMRKWHRQEAEASAKRQRARETEA 191
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE) HSP 1 Score: 113 bits (282), Expect = 1.060e-26 Identity = 59/114 (51.75%), Postives = 80/114 (70.18%), Query Frame = 1
Query: 1 SVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMQEDLEAFDIVVEKKEG-WEASAKRAHEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRERDA 339
++EATVRKRRLCFAGFV RM D RLPK LLG + GG Y GGQE DW+ R+ EDL AF++ EK+ G W+ SAK WY+++++GA F +W ++E + S R+R +E +A
Sbjct: 697 TIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMSDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAKEAEA 810
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Match: A0A6H5K0C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C0_9PHAE) HSP 1 Score: 110 bits (274), Expect = 1.220e-26 Identity = 55/102 (53.92%), Postives = 73/102 (71.57%), Query Frame = 1
Query: 1 SVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMQEDLEAFDIVVEKKEG-WEASAKRAHEWYDRIDEGARRFTDEWLKKEGDL 303
++EATVRKRRLCFAGFV RM D RLPK LLG + GG Y GGQE DW+ R+ EDL AF++ EK+ G W+ SAK WY+++ +GA RF +W ++E ++
Sbjct: 227 TIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVKDGAARFMRKWHRQEAEV 328
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE) HSP 1 Score: 109 bits (273), Expect = 1.450e-26 Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 1
Query: 1 SVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMQEDLEAFDIVVEKKEG-WEASAKRAHEWYDRIDEGARRFTDEWLKKEGD 300
++EATVRKRRLCFAGFV RM D RLPK LLG + GG Y GGQE DW+ R+ EDL AF + EK+ G W+ SAK WYD+I++GA F +W ++E +
Sbjct: 164 TIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAE 264
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Match: A0A6H5JUA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA0_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.710e-26 Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 1
Query: 1 SVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMQEDLEAFDIVVEKKEG-WEASAKRAHEWYDRIDEGARRFTDEWLKKEGDLS 306
++EATVRKRRLCFAGFV RM D RLPK LLG + GG Y GGQE DW+ R+ EDL AF++ EK+ G W+ SAK WY+++++GA F +W ++E + S
Sbjct: 139 TIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKGPEVWYNKVEDGAAWFMRKWHRQEAEAS 241
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Match: A0A6H5L649_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L649_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.810e-26 Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 1
Query: 1 SVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMQEDLEAFDIVVEKKEG-WEASAKRAHEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRE 330
++EATVRKRRLCFAGFV RM D RLPK LLG + GG Y GGQE DW+ R+ EDL AF++ EK+ G W+ SAK WY ++++GA F +W ++E + S R+R+ E
Sbjct: 183 TIEATVRKRRLCFAGFVMRMEDNRLPKHILLGAMAGGVGYRGGQEDDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYHKVEDGAAWFMRKWHRQEAEESAKRQREGE 293 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1172.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1172.5.1 >prot_P-littoralis_Contig1172.5.1 ID=prot_P-littoralis_Contig1172.5.1|Name=mRNA_P-littoralis_Contig1172.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp SVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRback to top mRNA from alignment at P-littoralis_Contig1172:59782..60138+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1172.5.1 ID=mRNA_P-littoralis_Contig1172.5.1|Name=mRNA_P-littoralis_Contig1172.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig1172:59782..60138+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1172:59782..60138+ >mRNA_P-littoralis_Contig1172.5.1 ID=mRNA_P-littoralis_Contig1172.5.1|Name=mRNA_P-littoralis_Contig1172.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig1172:59782..60138+ (Pylaiella littoralis U1_48)back to top |