mRNA_P-littoralis_Contig69.135.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig69.135.1
Unique NamemRNA_P-littoralis_Contig69.135.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5KCK7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK7_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 6.340e-36
Identity = 79/141 (56.03%), Postives = 101/141 (71.63%), Query Frame = 1
Query:    1 SLRKAGRKGKSLELKQPWMCKDYVSKVSNMGGVDTADHQNSAYAHDHKSCYNHWRRVMDAKFAQMFTNSFLG*KKLVPLLKSEAENRPQKVDNLVSDVAAKLKQTMAELDRLAKLERIMWEEVMATELMGRCNVGSNGGGG 423
            SLRKAG+ GKSLEL+QPWM KDYV+   NMGGV+TAD QN ++ HDHKS  NHWRRV++ KF + FTN  +  KK V LL+ +A N+  K   L  +V  KL + + EL RLAK+ER +W+E+++TELM RCNVG    GG
Sbjct:  187 SLRKAGQAGKSLELQQPWMRKDYVA---NMGGVETADQQNVSHTHDHKSYTNHWRRVIEGKFERRFTNIVVMFKKYVSLLEDQA-NKRIKGGGLELEVVEKLDRVLVELGRLAKMERAVWDEMLSTELMARCNVGRPNKGG 323          
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.340e-34
Identity = 82/165 (49.70%), Postives = 109/165 (66.06%), Query Frame = 1
Query:    1 SLRKAGRKGKSLELKQPWMCKDYVSKVSNMGGVDTADHQNSAYAHDHKSCYNHWRRVMDAKFAQMFTNSFLG*KKLVPLLKSEAENRPQKVDNLVSDVAAKLKQTMAELDRLAKLERIMWEEVMATELMGRCNVGSNGGGGHQW*RLRKICGEACRLRASVFAGT 495
            SLRKAG+ GKSLEL+QPWM KDYV+   NMGGV+TAD QN ++ HDH+S  NHWR VM+ KF Q FTN F+  KK V LL+ +A  R +    +  +V  KL + + EL RLAK+ER +W+E+++TELM RCNVG    GG    R  ++ G   ++  S+   T
Sbjct:  962 SLRKAGQAGKSLELQQPWMRKDYVA---NMGGVNTADRQNGSHTHDHESYTNHWRGVMEGKFKQTFTNIFVMFKKYVSLLEGQANKRIEG-GGVELEVVEKLDRLLVELGRLAKMERAVWDEMLSTELMARCNVGRPNNGG----RPAEVTGAPDKVWGSISVKT 1118          
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5KIY7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY7_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.410e-31
Identity = 74/139 (53.24%), Postives = 95/139 (68.35%), Query Frame = 1
Query:    1 SLRKAGRKGKSLELKQPWMCKDYVSKVSNMGGVDTADHQNSAYAHDHKSCYNHWRRVMDAKFAQMFTNSFLG*KKLVPLLKSEAENRPQKVDNLVSDVAAKLKQTMAELDRLAKLERIMWEEVMATELMGRCNVGSNGG 417
            SLRKAG+KGKS+EL+QPWM KDYV+   N+GGVDTAD QN ++AHDH++C N+WRRVM+AK  + FTN F+  K  V  L+ EA++R + VD L  DV+ KL+  + EL RLA LER  W +        RC   S GG
Sbjct:  105 SLRKAGQKGKSMELQQPWMRKDYVA---NIGGVDTADQQNGSHAHDHEACTNYWRRVMEAKIEETFTNIFVMFKAFVTFLEDEAKDRLEGVD-LELDVSMKLEGVVDELARLANLERSAWTK--------RCRRSSWGG 231          
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.720e-22
Identity = 63/131 (48.09%), Postives = 76/131 (58.02%), Query Frame = 1
Query:    1 SLRKAGRKGKSLELKQPWMCKDYVSKVSNMGGVDTADHQNSAYAHDHKSCYNHWRRVMDAKFAQMFTNSFLG*KKLVPLLKSEAENRPQKVDNLVSDVAAKLKQTMAELDRLAKLERIMWEEVMATELMGR 393
            SLRKAG+ GKSLEL+QPWM KDYV+   NMGGVDTAD QN ++ HDHKS  NHWRRVM+ KF Q FTN F+  KKL                                     K+ER +W+E+++TELM R
Sbjct: 1016 SLRKAGQAGKSLELQQPWMRKDYVA---NMGGVDTADQQNGSHTHDHKSYTNHWRRVMEGKFEQTFTNIFVMFKKL------------------------------------GKMERAVWDEMLSTELMAR 1107          
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5JMI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI2_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.420e-11
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1
Query:  172 MDAKFAQMFTNSFLG*KKLVPLLKSEAENRPQKVDNLVSDVAAKLKQTMAELDRLAKLERIMWEEVMATELMGRCNVGSNGGGG 423
            M+ KF Q FTN F+  KK V LL+ +A N+  K   L  +V  KL + + EL RLAK+ER +W+E+++TELM RCNVG    GG
Sbjct:    1 MEGKFEQTFTNIFVMFKKYVSLLEDQA-NKRIKGGGLELEVVEKLDRVLVELGRLAKMERAVWDEMLSTELMARCNVGRPNKGG 83          
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5JXZ2_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ2_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.270e-7
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 3
Query:  450 MWGSVSIKS*RLCRHSDCKHKTKNGCNCTLLCNKDCRGGGEGVLMCKRCFDDPGRHEQAGETQRSDGKEGARHRKAVE 683
            +WGSV++KS RLC +  CK ++  GC+C   C    RG   GVLMC+ C+  P  HEQA +    DG    R+RK  E
Sbjct:  360 VWGSVTLKSGRLCLNPTCKTRSTKGCSCKQFCT---RGDKSGVLMCETCWKSPESHEQAAKAYW-DGVAKGRNRKGFE 433          
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5KJJ0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ0_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.580e-7
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 3
Query:  450 MWGSVSIKS*RLCRHSDCKHKTKNGCNCTLLCNKDCRGGGEGVLMCKRCFDDPGRHEQAGETQRSDGKEGARHRKAVE 683
            +WGSV++KS RLC +  CK ++  GC+C   C    RG   GV MC+ C+  P  HEQA +    DG    R+RK  E
Sbjct:  452 VWGSVTLKSGRLCLNPTCKTRSTKGCSCEQFCT---RGDESGVFMCETCWKSPESHEQAAKAYW-DGLSKGRNRKGFE 525          
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5KCC7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC7_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.270e-6
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 3
Query:  450 MWGSVSIKS*RLCRHSDCKHKTKNGCNCTLLCNKDCRGGGEGVLMCKRCFDDPGRHEQAGETQRSDGKEGARHRKAVE 683
            +WGSV++KS RLC +  CK ++   C+C  +C    RG   GVLMC+ C+  P  HEQA +    DG    R+RK  +
Sbjct:  378 VWGSVTLKSGRLCLNPTCKTRSTKECSCNQVCT---RGDKSGVLMCETCWKSPESHEQAAKAYW-DGVSKGRNRKGFQ 451          
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5JER6_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER6_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.050e-6
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 3
Query:  450 MWGSVSIKS*RLCRHSDCKHKTKNGCNCTLLCNKDCRGGGEGVLMCKRCFDDPGRHEQA 626
            +WGSV++KS RLC +  CK ++  GC+C   C    RG   GVLMC+ C+  P  HEQA
Sbjct:  415 VWGSVTLKSGRLCLNPTCKTRSTKGCSCKQFCT---RGDKSGVLMCETCWKSPESHEQA 470          
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.240e-5
Identity = 32/78 (41.03%), Postives = 42/78 (53.85%), Query Frame = 3
Query:  450 MWGSVSIKS*RLCRHSDCKHKTKNGCNCTLLCNKDCRGGGEGVLMCKRCFDDPGRHEQAGETQRSDGKEGARHRKAVE 683
            +WGSV++KS RLC +  CK  +  GC+C   C     G   GVLMC+ C+  P  HEQA +       EG R+R   E
Sbjct:  739 VWGSVTLKSGRLCLNPTCKTTSMKGCSCKQFCTW---GDKAGVLMCETCWKSPESHEQAAKAYWDSVSEG-RNRTGFE 812          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KCK7_9PHAE6.340e-3656.03DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ecto... [more]
A0A6H5JJP9_9PHAE2.340e-3449.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIY7_9PHAE2.410e-3153.24DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JW40_9PHAE1.720e-2248.09HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5JMI2_9PHAE4.420e-1148.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXZ2_9PHAE1.270e-743.59DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KJJ0_9PHAE3.580e-742.31DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KCC7_9PHAE1.270e-641.03DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JER6_9PHAE3.050e-647.46DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A6H5LEE0_9PHAE2.240e-541.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig69contigP-littoralis_Contig69:547408..548873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1466
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791433.1398458-UTR-P-littoralis_Contig69:547407..5486541680791433.1398458-UTR-P-littoralis_Contig69:547407..548654Pylaiella littoralis U1_48UTRP-littoralis_Contig69 547408..548654 -
1680791433.161668-UTR-P-littoralis_Contig69:548819..5488731680791433.161668-UTR-P-littoralis_Contig69:548819..548873Pylaiella littoralis U1_48UTRP-littoralis_Contig69 548820..548873 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791433.1509023-CDS-P-littoralis_Contig69:548654..5488191680791433.1509023-CDS-P-littoralis_Contig69:548654..548819Pylaiella littoralis U1_48CDSP-littoralis_Contig69 548655..548819 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig69.135.1prot_P-littoralis_Contig69.135.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig69 548655..548819 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig69.135.1

>prot_P-littoralis_Contig69.135.1 ID=prot_P-littoralis_Contig69.135.1|Name=mRNA_P-littoralis_Contig69.135.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
MCKDYVSKVSNMGGVDTADHQNSAYAHDHKSCYNHWRRVMDAKFAQMFTN
SFLG*
back to top

mRNA from alignment at P-littoralis_Contig69:547408..548873-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig69.135.1 ID=mRNA_P-littoralis_Contig69.135.1|Name=mRNA_P-littoralis_Contig69.135.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1466bp|location=Sequence derived from alignment at P-littoralis_Contig69:547408..548873- (Pylaiella littoralis U1_48)
AGCCTCCGCAAAGCTGGGCGCAAGGGGAAAAGCTTGGAGCTGAAGCAGCC ATGGATGTGTAAGGATTACGTTTCCAAAGTTTCCAACATGGGGGGGGTGG ACACGGCCGATCATCAAAACAGTGCTTACGCCCACGACCACAAGTCGTGT TATAATCACTGGCGACGAGTCATGGACGCCAAGTTTGCACAGATGTTCAC AAACTCATTTTTGGGTTGAAAGAAGTTGGTGCCCCTTTTGAAGAGTGAAG CAGAAAACAGGCCCCAGAAAGTAGACAATCTAGTCTCTGATGTGGCCGCA AAGTTAAAACAAACGATGGCAGAGCTAGACAGATTAGCCAAGTTGGAGAG GATCATGTGGGAGGAAGTGATGGCCACTGAGCTTATGGGCAGGTGCAACG TTGGTAGCAACGGGGGTGGAGGCCACCAGTGGTGACGGCTGAGAAAAATA TGTGGGGAAGCGTGTCGATTAAGAGCTAGCGTCTTTGCAGGCACTCTGAC TGCAAACATAAAACCAAGAACGGGTGCAACTGCACTTTACTATGCAATAA GGACTGTAGAGGGGGTGGTGAGGGCGTCTTGATGTGCAAGCGGTGCTTCG ATGACCCTGGCAGGCATGAGCAGGCCGGCGAAACTCAGCGGAGTGACGGC AAAGAAGGTGCTCGACACCGAAAGGCCGTGGAGTGATGCTCGTGAGTGTG CCTTGTTCTACCTGCTCTTTTCACTGAGGTTGTCTATGCATTCTTGGTAG TTGTGTGAAAGGTGTACTGTTCGGTCGGTTCCATTCGACGCTCCTCATGG GATAGGTTCTTGCGTAATTGTAATTTGTTTTGTATCTCTGGTTTCGTGGA GAAACATGCACCCCTGGTCAAATCGGCGCAGCTCTCAAGCTTTTTTGTCT TGTTGGAATTCATTTGGTGCGCCAACGGGAGTCTTCCGATGTTGATAATT TTGTTGGTCACTCATACTCGTACAGTAGTTGGCGTCGTACTGCTTTTTTT CAGCTACAGGCGTTGTTTTGTTTTATGTGGAGAGGTGTGTGGAAACGTTG TCACCGAAAGGCCGTAGAGTGGTGCTCGTGAGTGTGCCTTGGTCTACCTG CTACTTCCACTGAGGTTTTATGCATTCTTGGTAGTAGTGTGAACGGTGTG CTGTTCGGTCGGTTCCATTCGACGCTACTCATGGGGTAGGTTCTCATGTA GTTGAAATTTGTTTTTCGTCTTTGGTTTCGTGGAGAAACATGCACCACTG GTCAAATCGGTGCAGCTCTCAAGCTTTTTTACCTTGTTGAATGTCATTTT GTGCGCCGACGAGAGTCTTTCGATTTTGAAATTTTTGTGGGTCACTCATA TACTCGTACAATGGTTGGTGTCAGCTGTCAGCAGCAGAACAACAAGCGTT GTTTTGTTTTGTTTGGAAGGGTGTGCGGAAACGTTGTCGAACATTAAAAG GGTTCGGGTGTTGCGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig69:547408..548873-

>mRNA_P-littoralis_Contig69.135.1 ID=mRNA_P-littoralis_Contig69.135.1|Name=mRNA_P-littoralis_Contig69.135.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig69:547408..548873- (Pylaiella littoralis U1_48)
ATGTGTAAGGATTACGTTTCCAAAGTTTCCAACATGGGGGGGGTGGACAC
GGCCGATCATCAAAACAGTGCTTACGCCCACGACCACAAGTCGTGTTATA
ATCACTGGCGACGAGTCATGGACGCCAAGTTTGCACAGATGTTCACAAAC
TCATTTTTGGGTTGA
back to top