mRNA_P-littoralis_Contig69.135.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5KCK7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK7_9PHAE) HSP 1 Score: 147 bits (372), Expect = 6.340e-36 Identity = 79/141 (56.03%), Postives = 101/141 (71.63%), Query Frame = 1
Query: 1 SLRKAGRKGKSLELKQPWMCKDYVSKVSNMGGVDTADHQNSAYAHDHKSCYNHWRRVMDAKFAQMFTNSFLG*KKLVPLLKSEAENRPQKVDNLVSDVAAKLKQTMAELDRLAKLERIMWEEVMATELMGRCNVGSNGGGG 423
SLRKAG+ GKSLEL+QPWM KDYV+ NMGGV+TAD QN ++ HDHKS NHWRRV++ KF + FTN + KK V LL+ +A N+ K L +V KL + + EL RLAK+ER +W+E+++TELM RCNVG GG
Sbjct: 187 SLRKAGQAGKSLELQQPWMRKDYVA---NMGGVETADQQNVSHTHDHKSYTNHWRRVIEGKFERRFTNIVVMFKKYVSLLEDQA-NKRIKGGGLELEVVEKLDRVLVELGRLAKMERAVWDEMLSTELMARCNVGRPNKGG 323
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE) HSP 1 Score: 148 bits (373), Expect = 2.340e-34 Identity = 82/165 (49.70%), Postives = 109/165 (66.06%), Query Frame = 1
Query: 1 SLRKAGRKGKSLELKQPWMCKDYVSKVSNMGGVDTADHQNSAYAHDHKSCYNHWRRVMDAKFAQMFTNSFLG*KKLVPLLKSEAENRPQKVDNLVSDVAAKLKQTMAELDRLAKLERIMWEEVMATELMGRCNVGSNGGGGHQW*RLRKICGEACRLRASVFAGT 495
SLRKAG+ GKSLEL+QPWM KDYV+ NMGGV+TAD QN ++ HDH+S NHWR VM+ KF Q FTN F+ KK V LL+ +A R + + +V KL + + EL RLAK+ER +W+E+++TELM RCNVG GG R ++ G ++ S+ T
Sbjct: 962 SLRKAGQAGKSLELQQPWMRKDYVA---NMGGVNTADRQNGSHTHDHESYTNHWRGVMEGKFKQTFTNIFVMFKKYVSLLEGQANKRIEG-GGVELEVVEKLDRLLVELGRLAKMERAVWDEMLSTELMARCNVGRPNNGG----RPAEVTGAPDKVWGSISVKT 1118
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5KIY7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY7_9PHAE) HSP 1 Score: 130 bits (327), Expect = 2.410e-31 Identity = 74/139 (53.24%), Postives = 95/139 (68.35%), Query Frame = 1
Query: 1 SLRKAGRKGKSLELKQPWMCKDYVSKVSNMGGVDTADHQNSAYAHDHKSCYNHWRRVMDAKFAQMFTNSFLG*KKLVPLLKSEAENRPQKVDNLVSDVAAKLKQTMAELDRLAKLERIMWEEVMATELMGRCNVGSNGG 417
SLRKAG+KGKS+EL+QPWM KDYV+ N+GGVDTAD QN ++AHDH++C N+WRRVM+AK + FTN F+ K V L+ EA++R + VD L DV+ KL+ + EL RLA LER W + RC S GG
Sbjct: 105 SLRKAGQKGKSMELQQPWMRKDYVA---NIGGVDTADQQNGSHAHDHEACTNYWRRVMEAKIEETFTNIFVMFKAFVTFLEDEAKDRLEGVD-LELDVSMKLEGVVDELARLANLERSAWTK--------RCRRSSWGG 231
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE) HSP 1 Score: 112 bits (280), Expect = 1.720e-22 Identity = 63/131 (48.09%), Postives = 76/131 (58.02%), Query Frame = 1
Query: 1 SLRKAGRKGKSLELKQPWMCKDYVSKVSNMGGVDTADHQNSAYAHDHKSCYNHWRRVMDAKFAQMFTNSFLG*KKLVPLLKSEAENRPQKVDNLVSDVAAKLKQTMAELDRLAKLERIMWEEVMATELMGR 393
SLRKAG+ GKSLEL+QPWM KDYV+ NMGGVDTAD QN ++ HDHKS NHWRRVM+ KF Q FTN F+ KKL K+ER +W+E+++TELM R
Sbjct: 1016 SLRKAGQAGKSLELQQPWMRKDYVA---NMGGVDTADQQNGSHTHDHKSYTNHWRRVMEGKFEQTFTNIFVMFKKL------------------------------------GKMERAVWDEMLSTELMAR 1107
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5JMI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI2_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 4.420e-11 Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1
Query: 172 MDAKFAQMFTNSFLG*KKLVPLLKSEAENRPQKVDNLVSDVAAKLKQTMAELDRLAKLERIMWEEVMATELMGRCNVGSNGGGG 423
M+ KF Q FTN F+ KK V LL+ +A N+ K L +V KL + + EL RLAK+ER +W+E+++TELM RCNVG GG
Sbjct: 1 MEGKFEQTFTNIFVMFKKYVSLLEDQA-NKRIKGGGLELEVVEKLDRVLVELGRLAKMERAVWDEMLSTELMARCNVGRPNKGG 83
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5JXZ2_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ2_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 1.270e-7 Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 3
Query: 450 MWGSVSIKS*RLCRHSDCKHKTKNGCNCTLLCNKDCRGGGEGVLMCKRCFDDPGRHEQAGETQRSDGKEGARHRKAVE 683
+WGSV++KS RLC + CK ++ GC+C C RG GVLMC+ C+ P HEQA + DG R+RK E
Sbjct: 360 VWGSVTLKSGRLCLNPTCKTRSTKGCSCKQFCT---RGDKSGVLMCETCWKSPESHEQAAKAYW-DGVAKGRNRKGFE 433
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5KJJ0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ0_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 3.580e-7 Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 3
Query: 450 MWGSVSIKS*RLCRHSDCKHKTKNGCNCTLLCNKDCRGGGEGVLMCKRCFDDPGRHEQAGETQRSDGKEGARHRKAVE 683
+WGSV++KS RLC + CK ++ GC+C C RG GV MC+ C+ P HEQA + DG R+RK E
Sbjct: 452 VWGSVTLKSGRLCLNPTCKTRSTKGCSCEQFCT---RGDESGVFMCETCWKSPESHEQAAKAYW-DGLSKGRNRKGFE 525
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5KCC7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC7_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 1.270e-6 Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 3
Query: 450 MWGSVSIKS*RLCRHSDCKHKTKNGCNCTLLCNKDCRGGGEGVLMCKRCFDDPGRHEQAGETQRSDGKEGARHRKAVE 683
+WGSV++KS RLC + CK ++ C+C +C RG GVLMC+ C+ P HEQA + DG R+RK +
Sbjct: 378 VWGSVTLKSGRLCLNPTCKTRSTKECSCNQVCT---RGDKSGVLMCETCWKSPESHEQAAKAYW-DGVSKGRNRKGFQ 451
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5JER6_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER6_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 3.050e-6 Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 3
Query: 450 MWGSVSIKS*RLCRHSDCKHKTKNGCNCTLLCNKDCRGGGEGVLMCKRCFDDPGRHEQA 626
+WGSV++KS RLC + CK ++ GC+C C RG GVLMC+ C+ P HEQA
Sbjct: 415 VWGSVTLKSGRLCLNPTCKTRSTKGCSCKQFCT---RGDKSGVLMCETCWKSPESHEQA 470
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 2.240e-5 Identity = 32/78 (41.03%), Postives = 42/78 (53.85%), Query Frame = 3
Query: 450 MWGSVSIKS*RLCRHSDCKHKTKNGCNCTLLCNKDCRGGGEGVLMCKRCFDDPGRHEQAGETQRSDGKEGARHRKAVE 683
+WGSV++KS RLC + CK + GC+C C G GVLMC+ C+ P HEQA + EG R+R E
Sbjct: 739 VWGSVTLKSGRLCLNPTCKTTSMKGCSCKQFCTW---GDKAGVLMCETCWKSPESHEQAAKAYWDSVSEG-RNRTGFE 812 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig69.135.1 >prot_P-littoralis_Contig69.135.1 ID=prot_P-littoralis_Contig69.135.1|Name=mRNA_P-littoralis_Contig69.135.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp MCKDYVSKVSNMGGVDTADHQNSAYAHDHKSCYNHWRRVMDAKFAQMFTNback to top mRNA from alignment at P-littoralis_Contig69:547408..548873- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig69.135.1 ID=mRNA_P-littoralis_Contig69.135.1|Name=mRNA_P-littoralis_Contig69.135.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1466bp|location=Sequence derived from alignment at P-littoralis_Contig69:547408..548873- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig69:547408..548873- >mRNA_P-littoralis_Contig69.135.1 ID=mRNA_P-littoralis_Contig69.135.1|Name=mRNA_P-littoralis_Contig69.135.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig69:547408..548873- (Pylaiella littoralis U1_48)back to top |