prot_P-littoralis_Contig69.133.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig69.133.1
Unique Nameprot_P-littoralis_Contig69.133.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length271
Homology
BLAST of mRNA_P-littoralis_Contig69.133.1 vs. uniprot
Match: A0A6H5KRW3_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW3_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.960e-40
Identity = 95/199 (47.74%), Postives = 128/199 (64.32%), Query Frame = 0
Query:   17 KARAVPNDTRLIDPEGMAVSGQLEPGLIVHACPVTEVGRRLPGI-------TQKTEVLAINSGQG------GGSAEPTLGPETPGSGVAQEYNSDEARRFGERLCEITASEWAVEENKDPTASLALTIIAAGNTVEDIPTRSLPSSVVEDEVKRLVAQGTIIKLTDSKQLLVWRSSRVPTDRPNRRPGKYERLLGEEPV 202
            K  A+ ++T L+DP  M VSGQ E GLI+HA P+TEVGR L G+        ++  V+ INS +G      G  AEP +   + GS + + +NS EA+ FGERLCE TAS+W   + KD TA  AL +I     V  I    +P  V  D+VKRLVAQGTI+ L DS++LLV R++R P++RPNR PG+++RLLG+EPV
Sbjct:  495 KHYALKDETPLVDPGKMVVSGQWESGLILHAVPMTEVGRCLLGMGVIKKQRDKRKRVMVINSNEGXXXXXXGSEAEPVM--RSQGSQL-EGWNSKEAKEFGERLCEKTASDWVEAQYKDLTAKAALQLITDEVEVHKIGENDIPEGVDIDDVKRLVAQGTIMVLADSRKLLVRRATREPSNRPNRNPGQFDRLLGDEPV 690          
BLAST of mRNA_P-littoralis_Contig69.133.1 vs. uniprot
Match: A0A6H5JWR4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR4_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 5.520e-34
Identity = 79/162 (48.77%), Postives = 105/162 (64.81%), Query Frame = 0
Query:   72 GQGG-GSAEPTLGPETPGSGVAQEYNSDEAR---RFGERLCEITASEWAVEENKDPTASLALTIIAAGNTVEDIPTRSLPSSVVED--EVKRLVAQGTIIKLTDSKQLLVWRSSRVPTDRPNRRPGKYERLLGEEPVRTYVPLELRPWVMDCAHKEVVHLDD 227
            G GG G A P L P+ P     QEY+ ++ +    FGE+LC+ TAS+WA  + +D TA LA+T I      + +    +P  V  D  E+KRLV+QGT++ L +SK LLV +  + P + PNR PG++ER +GEEPVRTYVP  LRPWVMDCAHKE VHL +
Sbjct:  350 GSGGRGPAAPPL-PQIP----LQEYDEEQTQAAIEFGEKLCDKTASDWADIQEEDDTARLAITAIEGHADPKRMKEGDIPEGVDVDLDELKRLVSQGTLLVLPNSKHLLVRKELKAPAENPNRNPGQFERWVGEEPVRTYVPRMLRPWVMDCAHKEAVHLGE 506          
BLAST of mRNA_P-littoralis_Contig69.133.1 vs. uniprot
Match: A0A6H5JKZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ8_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.260e-16
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 0
Query:  181 VPTDRPNRRPGKYERLLGEEPVRTYVPLELRPWVMDCAHKEVVHLDD 227
            +P +RPNR PG+YERLLGEEPVRTYVP+ LRPWVMDCAHKE +HL +
Sbjct:    1 MPAERPNRNPGEYERLLGEEPVRTYVPMLLRPWVMDCAHKEAIHLGE 47          
BLAST of mRNA_P-littoralis_Contig69.133.1 vs. uniprot
Match: A0A6H5KAM4_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM4_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.670e-15
Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = 0
Query:  121 KDPTASLALTIIAAGNTVEDIPTRSLPSSVVED--EVKRLVAQGTIIKLTDSKQLLVWRSSRVPTDRPNRRPGKYERLLGEEPVRTYVPLELRP 212
            KD TA LA+T I      + +    +P  V  D  E+KRLV+QGT++ L +SK LLV +  + P + PNR PG++ERL+GE+PVRTYVP  LRP
Sbjct:  478 KDDTARLAITAIEGHADPKRMKEGDIPEGVDVDLDELKRLVSQGTLLVLPNSKHLLVRKELKAPAENPNRNPGQFERLVGEQPVRTYVPRMLRP 571          
BLAST of mRNA_P-littoralis_Contig69.133.1 vs. uniprot
Match: A0A6H5J755_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J755_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 5.630e-7
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 0
Query:  173 LLVWRSSRVPTDRPNRRPG-KYERLLGEEPVRTYVPLELRPWVMDCAHKEVVHLDD 227
            LL+ + S  PT R  R  G K+ERLLG+EPVR YVP  LRPW ++  H E  HL +
Sbjct:   43 LLIKKPSEAPTSRAQRHSGGKFERLLGDEPVRLYVPFLLRPWALNAVHTEGCHLGE 98          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.133.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KRW3_9PHAE1.960e-4047.74Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JWR4_9PHAE5.520e-3448.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKZ8_9PHAE4.260e-1676.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAM4_9PHAE2.670e-1548.94RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J755_9PHAE5.630e-751.79Integrase catalytic domain-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 246..270
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 225..270

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig69contigP-littoralis_Contig69:538177..539515 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig69.133.1mRNA_P-littoralis_Contig69.133.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig69 538005..540283 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig69.133.1 ID=prot_P-littoralis_Contig69.133.1|Name=mRNA_P-littoralis_Contig69.133.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=271bp
MEYLAGYGVLEKQRPAKARAVPNDTRLIDPEGMAVSGQLEPGLIVHACPV
TEVGRRLPGITQKTEVLAINSGQGGGSAEPTLGPETPGSGVAQEYNSDEA
RRFGERLCEITASEWAVEENKDPTASLALTIIAAGNTVEDIPTRSLPSSV
VEDEVKRLVAQGTIIKLTDSKQLLVWRSSRVPTDRPNRRPGKYERLLGEE
PVRTYVPLELRPWVMDCAHKEVVHLDDQNRERHNRLNPSQAAEQEGSRQR
RAKGQRDGRREGGEERARGR*
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