mRNA_P-littoralis_Contig1170.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1170.7.1
Unique NamemRNA_P-littoralis_Contig1170.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1170.7.1 vs. uniprot
Match: A0A7C7IX81_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A7C7IX81_9FLAO)

HSP 1 Score: 258 bits (660), Expect = 3.870e-83
Identity = 123/131 (93.89%), Postives = 127/131 (96.95%), Query Frame = 1
Query:    1 LVAAPVVNPNGGNLAVGTTIYNTALTTNGANDVSPGIYSWDGTKWITQHLREDYRRYVQTGGCQRTTIRETTGNPNPNDVDVVTGLSSQVFTPKYSGRYRIEVGTNFSGGAIDDFTSDDEISLATTEGAFF 393
            LVAAPVVNPNGGNLA+GTTIYNTALT NGANDVSPGIYSWDGTKWITQHLREDYRRY QTGGCQRTTIRETTGNPNPNDVDVVTGLSSQVFTPKYSGRYRIEVGTNFS GAI+DFTS DEISLAT+EG+FF
Sbjct:   56 LVAAPVVNPNGGNLAIGTTIYNTALTANGANDVSPGIYSWDGTKWITQHLREDYRRYAQTGGCQRTTIRETTGNPNPNDVDVVTGLSSQVFTPKYSGRYRIEVGTNFSAGAIEDFTSQDEISLATSEGSFF 186          
BLAST of mRNA_P-littoralis_Contig1170.7.1 vs. uniprot
Match: A0A6G6GP17_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriaceae bacterium RR4-40 TaxID=2744027 RepID=A0A6G6GP17_9FLAO)

HSP 1 Score: 229 bits (583), Expect = 1.740e-71
Identity = 109/131 (83.21%), Postives = 116/131 (88.55%), Query Frame = 1
Query:    1 LVAAPVVNPNGGNLAVGTTIYNTALTTNGANDVSPGIYSWDGTKWITQHLREDYRRYVQTGGCQRTTIRETTGNPNPNDVDVVTGLSSQVFTPKYSGRYRIEVGTNFSGGAIDDFTSDDEISLATTEGAFF 393
            LVAAPVVNP GG LAVGTT+YNT LTTNGANDVSPGIYSWDGTKWITQHLREDY+RY QT  CQRTTIRE+T NPNPNDVDVV GL ++VF PKYSGRYRIEVG NFS G I DFTS DEISLAT+EG+FF
Sbjct:   56 LVAAPVVNPAGGTLAVGTTVYNTELTTNGANDVSPGIYSWDGTKWITQHLREDYKRYTQTNVCQRTTIRESTSNPNPNDVDVVAGLDNEVFRPKYSGRYRIEVGVNFSAGEIADFTSQDEISLATSEGSFF 186          
BLAST of mRNA_P-littoralis_Contig1170.7.1 vs. uniprot
Match: A0A7Y2EJR5_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A7Y2EJR5_9FLAO)

HSP 1 Score: 187 bits (476), Expect = 2.240e-55
Identity = 85/130 (65.38%), Postives = 106/130 (81.54%), Query Frame = 1
Query:   10 APVVNPNGGNLAVGTTIYNTALTTNGANDVSPGIYSWDGTKWITQHLREDYRRYVQTGGCQRTTIRETTGNPNPNDVDVVTGLSSQVFTPKYSGRYRIEVGTNFSGGAIDDFTS--DDEISLATTEGAFF 393
            +PV+NPNGG L +GTT+YNTA TT+GANDV PGIYSWDGT+W+TQ+ +++Y+++ QTGGCQRTTIRE+  NPNP+D D V GL++Q FTP +SG YR+EV TN   G I DFTS  + EISLAT EGAFF
Sbjct:   55 SPVINPNGGALEIGTTVYNTATTTSGANDVHPGIYSWDGTRWLTQYYKKEYQKFEQTGGCQRTTIRESNSNPNPSDADNVAGLTNQTFTPTFSGTYRVEVRTNLGAGRIQDFTSGTESEISLATMEGAFF 184          
BLAST of mRNA_P-littoralis_Contig1170.7.1 vs. uniprot
Match: A0A3L9YAC0_9FLAO (Uncharacterized protein n=2 Tax=Ulvibacter antarcticus TaxID=442714 RepID=A0A3L9YAC0_9FLAO)

HSP 1 Score: 182 bits (462), Expect = 2.920e-53
Identity = 85/130 (65.38%), Postives = 101/130 (77.69%), Query Frame = 1
Query:    4 VAAPVVNPNGGNLAVGTTIYNTALTTNGANDVSPGIYSWDGTKWITQHLREDYRRYVQTGGCQRTTIRETTGNPNPNDVDVVTGLSSQVFTPKYSGRYRIEVGTNFSGGAIDDFTSDDEISLATTEGAFF 393
            V+APV NPNGG++  GT ++NT LTTNGANDVSPG+Y+W G  W+ Q    D ++Y QT GCQRTTIRE+ GNP P D D V GL+SQ FTPKYSG YRIEV TNF+ G ID FTS D+ISLAT+EG+FF
Sbjct:   57 VSAPVTNPNGGSIVSGTVVFNTNLTTNGANDVSPGVYAWSGAIWLPQFTLTDRKKYEQTSGCQRTTIRESHGNPEPTDSDDVAGLNSQTFTPKYSGIYRIEVKTNFAAGEIDPFTSSDKISLATSEGSFF 186          
BLAST of mRNA_P-littoralis_Contig1170.7.1 vs. uniprot
Match: A0A2D8FVC2_9FLAO (Uncharacterized protein n=2 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A2D8FVC2_9FLAO)

HSP 1 Score: 176 bits (446), Expect = 9.180e-51
Identity = 82/133 (61.65%), Postives = 104/133 (78.20%), Query Frame = 1
Query:    1 LVAAPVVNPNGGNLAVGTTIYNTALTTNGANDVSPGIYSWDGTKWITQHLREDYRRYVQTGGCQRTTIRETTGNPNPNDVDVVTGLSSQVFTPKYSGRYRIEVGTNFSGGAIDDFTS--DDEISLATTEGAFF 393
            ++A+PV+NPNGG L  GTTIYNT+ TTNGANDVSPGIYSW G+ W  Q  +++Y ++ QTGGCQRTTIRE+ G PNP+  D + GL+++ F P YSG Y++EV TNF  G I+DFTS  + EISLAT+EGAFF
Sbjct:   61 ILASPVINPNGGALEPGTTIYNTSNTTNGANDVSPGIYSWTGSSWEPQFFKKEYEKFEQTGGCQRTTIRESFGTPNPSAADNIAGLTARTFVPTYSGVYKVEVRTNFGAGKIEDFTSGTESEISLATSEGAFF 193          
BLAST of mRNA_P-littoralis_Contig1170.7.1 vs. uniprot
Match: A0A1A9LBU4_9FLAO (Uncharacterized protein n=1 Tax=Aequorivita soesokkakensis TaxID=1385699 RepID=A0A1A9LBU4_9FLAO)

HSP 1 Score: 173 bits (439), Expect = 9.220e-50
Identity = 80/128 (62.50%), Postives = 101/128 (78.91%), Query Frame = 1
Query:   13 PVVNPNGGNLAVGTTIYNTALTTNGANDVSPGIYSWDGTKWITQHLREDYRRYVQTGGCQRTTIRETTGNPNPNDVDVVTGLSSQVFTPKYSGRYRIEVGTNFSGGAIDDFT-SDDEISLATTEGAFF 393
            PV NP GGNL  GT +YNT+LTTNG+ND+ PG+Y+WDG+ W  Q + E+Y++Y QTGGCQRTTIRE+ G+P P+  D V GL++Q FTPKYSG Y+IEV TNF  G + +FT S D+ISLAT+EGAFF
Sbjct:   62 PVANPVGGNLVAGTVVYNTSLTTNGSNDLYPGLYAWDGSSWKPQFIMEEYKKYSQTGGCQRTTIRESYGDPRPDHADNVAGLTNQTFTPKYSGTYKIEVRTNFGAGEMTNFTGSYDKISLATSEGAFF 189          
BLAST of mRNA_P-littoralis_Contig1170.7.1 vs. uniprot
Match: A0A5C6YSP6_9FLAO (Uncharacterized protein n=1 Tax=Aequorivita lipolytica TaxID=153267 RepID=A0A5C6YSP6_9FLAO)

HSP 1 Score: 166 bits (419), Expect = 9.110e-47
Identity = 79/127 (62.20%), Postives = 95/127 (74.80%), Query Frame = 1
Query:   13 PVVNPNGGNLAVGTTIYNTALTTNGANDVSPGIYSWDGTKWITQHLREDYRRYVQTGGCQRTTIRETTGNPNPNDVDVVTGLSSQVFTPKYSGRYRIEVGTNFSGGAIDDFTSDDEISLATTEGAFF 393
            PV+NPNG NL  GT +YNT+ T  GANDV PGIY+W G++W  Q + E+Y++Y QTG  Q TTIR+    P P+D D V GL++QVF PKYSG YRIEV TNFS G I+DFTS D+ISLAT EGAFF
Sbjct:   62 PVINPNGSNLVEGTVVYNTSKTKLGANDVYPGIYAWSGSEWNPQFIMEEYKKYTQTGSYQLTTIRDGYRTPRPDDADNVAGLTNQVFKPKYSGTYRIEVKTNFSAGKINDFTSLDKISLATMEGAFF 188          
BLAST of mRNA_P-littoralis_Contig1170.7.1 vs. uniprot
Match: UPI001890E9CC (hypothetical protein n=1 Tax=Nonlabens antarcticus TaxID=392714 RepID=UPI001890E9CC)

HSP 1 Score: 161 bits (408), Expect = 4.820e-45
Identity = 77/130 (59.23%), Postives = 95/130 (73.08%), Query Frame = 1
Query:    4 VAAPVVNPNGGNLAVGTTIYNTALTTNGANDVSPGIYSWDGTKWITQHLREDYRRYVQTGGCQRTTIRETTGNPNPNDVDVVTGLSSQVFTPKYSGRYRIEVGTNFSGGAIDDFTSDDEISLATTEGAFF 393
            + +PV NPN G L  GT +YNT+ T +G+NDV PGIY+WDG +W  Q   E+Y ++ QTGG QRTTIRE   +PNPN+ D + GLS   F PKYSG Y+IEV TNFSGG + DF++ DEISLAT EGAFF
Sbjct:   59 IESPVKNPNTGPLVQGTIVYNTSKTKSGSNDVYPGIYAWDGFQWQPQFYMEEYEKFTQTGGDQRTTIRENLFDPNPNNADPIDGLSGVGFIPKYSGFYKIEVKTNFSGGKVADFSNIDEISLATAEGAFF 188          
BLAST of mRNA_P-littoralis_Contig1170.7.1 vs. uniprot
Match: A0A7K0EYH3_9FLAO (Uncharacterized protein n=1 Tax=Aequorivita lutea TaxID=2610884 RepID=A0A7K0EYH3_9FLAO)

HSP 1 Score: 157 bits (396), Expect = 2.490e-43
Identity = 69/108 (63.89%), Postives = 91/108 (84.26%), Query Frame = 3
Query:  384 SFLFALNGTGVNMDPTSTTFDYEQGWIYTHSYSTHNSIESPALEDNTVPHFATVVYYRYLLAGHNYTFTLSNNINTGNDYFVNNGDSGTGQGHIGHDQPCSVEFTYLG 707
            +F F ++G+GVN++P S TFDY++GW+YTHSYS  N+IESP++E + VPHF  VV+Y +LLAG NYTF+L+N   TG+ +FVNNGD+G GQGHIGHDQPCSVEFT++G
Sbjct:  187 AFFFKISGSGVNINPASGTFDYKRGWMYTHSYSALNTIESPSIESHLVPHFEGVVHYLHLLAGENYTFSLTNCTITGDQFFVNNGDTGDGQGHIGHDQPCSVEFTFIG 294          
BLAST of mRNA_P-littoralis_Contig1170.7.1 vs. uniprot
Match: A0A2N0ETF5_9FLAO (Uncharacterized protein n=1 Tax=Ulvibacter sp. MAR_2010_11 TaxID=1250229 RepID=A0A2N0ETF5_9FLAO)

HSP 1 Score: 152 bits (385), Expect = 1.090e-41
Identity = 67/107 (62.62%), Postives = 88/107 (82.24%), Query Frame = 3
Query:  384 SFLFALNGTGVNMDPTSTTFDYEQGWIYTHSYSTHNSIESPALEDNTVPHFATVVYYRYLLAGHNYTFTLSNNINTGNDYFVNNGDSGTGQGHIGHDQPCSVEFTYL 704
            SF F ++GTGV+++P S+++DY +GW+YTHSYSTHNS +SPAL+DNT  H A++VYY YL+ G  Y F LS  I TG+ YF+NNGD+G G+GH+GHD+PCSVEFTYL
Sbjct:  186 SFFFTMSGTGVDINPASSSYDYMEGWLYTHSYSTHNSNDSPALQDNTYLHNASLVYYLYLVGGTAYNFNLSICITTGHSYFLNNGDTGEGRGHVGHDRPCSVEFTYL 292          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1170.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C7IX81_9FLAO3.870e-8393.89Uncharacterized protein n=1 Tax=Flavobacteriaceae ... [more]
A0A6G6GP17_9FLAO1.740e-7183.21Uncharacterized protein n=1 Tax=Flavobacteriaceae ... [more]
A0A7Y2EJR5_9FLAO2.240e-5565.38Uncharacterized protein n=1 Tax=Flavobacteriaceae ... [more]
A0A3L9YAC0_9FLAO2.920e-5365.38Uncharacterized protein n=2 Tax=Ulvibacter antarct... [more]
A0A2D8FVC2_9FLAO9.180e-5161.65Uncharacterized protein n=2 Tax=Flavobacteriaceae ... [more]
A0A1A9LBU4_9FLAO9.220e-5062.50Uncharacterized protein n=1 Tax=Aequorivita soesok... [more]
A0A5C6YSP6_9FLAO9.110e-4762.20Uncharacterized protein n=1 Tax=Aequorivita lipoly... [more]
UPI001890E9CC4.820e-4559.23hypothetical protein n=1 Tax=Nonlabens antarcticus... [more]
A0A7K0EYH3_9FLAO2.490e-4363.89Uncharacterized protein n=1 Tax=Aequorivita lutea ... [more]
A0A2N0ETF5_9FLAO1.090e-4162.62Uncharacterized protein n=1 Tax=Ulvibacter sp. MAR... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1170contigP-littoralis_Contig1170:59425..60131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1223410.KN050846_gene1385
Model size707
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.05e-31
EggNOG OGsCOG5295@1|root,COG5295@2|Bacteria,4PPPB@976|Bacteroidetes,1IKRZ@117743|Flavobacteriia
DescriptionHep Hag repeat protein
Cds size417
COG categoryUW
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789490.8856006-CDS-P-littoralis_Contig1170:59424..598411680789490.8856006-CDS-P-littoralis_Contig1170:59424..59841Pylaiella littoralis U1_48CDSP-littoralis_Contig1170 59425..59841 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789490.8967638-UTR-P-littoralis_Contig1170:59841..601311680789490.8967638-UTR-P-littoralis_Contig1170:59841..60131Pylaiella littoralis U1_48UTRP-littoralis_Contig1170 59842..60131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1170.7.1prot_P-littoralis_Contig1170.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1170 59425..59841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1170.7.1

>prot_P-littoralis_Contig1170.7.1 ID=prot_P-littoralis_Contig1170.7.1|Name=mRNA_P-littoralis_Contig1170.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=139bp
LVAAPVVNPNGGNLAVGTTIYNTALTTNGANDVSPGIYSWDGTKWITQHL
REDYRRYVQTGGCQRTTIRETTGNPNPNDVDVVTGLSSQVFTPKYSGRYR
IEVGTNFSGGAIDDFTSDDEISLATTEGAFFLPSMERV*
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mRNA from alignment at P-littoralis_Contig1170:59425..60131+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1170.7.1 ID=mRNA_P-littoralis_Contig1170.7.1|Name=mRNA_P-littoralis_Contig1170.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=707bp|location=Sequence derived from alignment at P-littoralis_Contig1170:59425..60131+ (Pylaiella littoralis U1_48)
TTGGTAGCAGCGCCGGTCGTAAATCCGAATGGTGGAAATCTTGCCGTCGG AACCACCATTTACAACACAGCGCTCACAACTAACGGTGCAAATGATGTTT CACCTGGAATTTACAGTTGGGATGGCACCAAATGGATTACACAACATTTA CGAGAAGATTATCGTCGATATGTACAAACCGGAGGTTGCCAAAGAACTAC GATTCGAGAAACAACAGGAAATCCGAACCCTAATGATGTGGATGTCGTTA CAGGACTCTCATCTCAAGTTTTTACTCCAAAATATTCGGGAAGATATAGA ATTGAAGTGGGCACCAATTTTTCCGGTGGTGCTATAGACGATTTTACCAG TGATGATGAAATCTCTTTAGCCACTACTGAAGGAGCTTTCTTTTTGCCCT CAATGGAACGGGTGTGAATATGGACCCAACGAGTACCACGTTTGATTATG AACAAGGGTGGATTTATACACATTCATACAGCACACACAATTCAATTGAA TCTCCAGCCTTAGAAGATAATACAGTACCTCATTTTGCAACGGTGGTCTA TTACAGATATCTTTTAGCAGGCCATAATTATACCTTCACCCTTTCTAATA ATATTAATACTGGAAACGATTACTTTGTAAACAATGGAGATAGTGGCACA GGTCAAGGACATATTGGTCACGACCAGCCTTGTTCTGTAGAATTTACCTA TCTTGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1170:59425..60131+

>mRNA_P-littoralis_Contig1170.7.1 ID=mRNA_P-littoralis_Contig1170.7.1|Name=mRNA_P-littoralis_Contig1170.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig1170:59425..60131+ (Pylaiella littoralis U1_48)
TTGGTAGCAGCGCCGGTCGTAAATCCGAATGGTGGAAATCTTGCCGTCGG
AACCACCATTTACAACACAGCGCTCACAACTAACGGTGCAAATGATGTTT
CACCTGGAATTTACAGTTGGGATGGCACCAAATGGATTACACAACATTTA
CGAGAAGATTATCGTCGATATGTACAAACCGGAGGTTGCCAAAGAACTAC
GATTCGAGAAACAACAGGAAATCCGAACCCTAATGATGTGGATGTCGTTA
CAGGACTCTCATCTCAAGTTTTTACTCCAAAATATTCGGGAAGATATAGA
ATTGAAGTGGGCACCAATTTTTCCGGTGGTGCTATAGACGATTTTACCAG
TGATGATGAAATCTCTTTAGCCACTACTGAAGGAGCTTTCTTTTTGCCCT
CAATGGAACGGGTGTGA
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