mRNA_P-littoralis_Contig1170.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1170.5.1
Unique NamemRNA_P-littoralis_Contig1170.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1170.5.1 vs. uniprot
Match: A0A6H5L639_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L639_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.660e-8
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:  475 IIANTVSADDIPKESKRRRLELE-RNAKICVVD-----DGALSRSSDSTSATPTSVPH--LLSAGLGTILLSKMIDLRSVKQLQLSCSSVCADCREWTGFHVRV 762
            ++      +DIP +++RR   L  R  K C        DG+ SR  ++  AT +  P   LLSA L  +LLS+++ +  +KQLQL+ SS+C DCRE T FHV V
Sbjct:   39 LVTPAPDVEDIPLKNRRRSQRLSSRRMKTCARVGGTGVDGSESRDDNANIATNSRTPTRPLLSAALRIVLLSELVPVTIIKQLQLASSSICGDCRELTEFHVNV 142
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1170.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L639_9PHAE3.660e-839.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1170contigP-littoralis_Contig1170:21428..24135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size764
Hectar predicted targeting categorysignal peptide
Exons3
Cds size762
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789490.4946654-CDS-P-littoralis_Contig1170:21429..216171680789490.4946654-CDS-P-littoralis_Contig1170:21429..21617Pylaiella littoralis U1_48CDSP-littoralis_Contig1170 21430..21617 -
1680789490.5099323-CDS-P-littoralis_Contig1170:22769..230121680789490.5099323-CDS-P-littoralis_Contig1170:22769..23012Pylaiella littoralis U1_48CDSP-littoralis_Contig1170 22770..23012 -
1680789490.5224009-CDS-P-littoralis_Contig1170:23804..241351680789490.5224009-CDS-P-littoralis_Contig1170:23804..24135Pylaiella littoralis U1_48CDSP-littoralis_Contig1170 23805..24135 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1170.5.1prot_P-littoralis_Contig1170.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1170 21430..24135 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1170.5.1

>prot_P-littoralis_Contig1170.5.1 ID=prot_P-littoralis_Contig1170.5.1|Name=mRNA_P-littoralis_Contig1170.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=254bp
RLATTLNRTHDTIGSRWCCLNLFVVAMGLVNSSPSANAATLTTNEELRLR
EELAPLPPSSSSSSLLNERGRSHASHPVVAAVSSADGISKISKSQRLELA
NNVTICAAGDGNGRLSANDANLTTNQELPSREKLVPLRPSPSSFSLLNER
GEFHASYPIIANTVSADDIPKESKRRRLELERNAKICVVDDGALSRSSDS
TSATPTSVPHLLSAGLGTILLSKMIDLRSVKQLQLSCSSVCADCREWTGF
HVRV
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mRNA from alignment at P-littoralis_Contig1170:21428..24135-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1170.5.1 ID=mRNA_P-littoralis_Contig1170.5.1|Name=mRNA_P-littoralis_Contig1170.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2708bp|location=Sequence derived from alignment at P-littoralis_Contig1170:21428..24135- (Pylaiella littoralis U1_48)
CGCTTAGCTACTACGCTGAACCGCACGCACGATACCATAGGTTCTCGTTG
GTGTTGCTTGAATCTCTTCGTTGTTGCAATGGGCTTAGTAAACAGCAGTC
CGTCTGCGAATGCTGCAACCCTTACAACAAACGAAGAGCTTCGCCTCCGT
GAAGAGCTCGCGCCTCTTCCACCGTCGTCCTCTTCCTCCTCGCTCTTGAA
CGAGCGAGGCAGGTCCCATGCTTCGCATCCTGTCGTCGCCGCTGTCAGCA
GTGCGGATGGTATCTCAAAGATCAGCAAGAGTCAGCGTCTGGAGTTGGCG
AACAATGTGACGATCTGCGCGGCTGGCGATGGTGAGAGAGCCCAACCCGT
ACATTGCAGATGGCATGGTTTCTCCGTGTATAGACTATATCGTCACCTCT
GCTTCCAATGCTTGCTCCACGTATATCGCCATCGTGATTGGTCTCTTCAC
GATCGACCAGTCAAACGTCGATGCCACTCACTCCTCCCCGGTGTCGAGGA
GTAGGTATTGGGATAACGATCCCGGCCAGGTGCCATCAAAGGTGCTACCG
TATGGAACTGAGCGTCTCGAGTTTTGTCGAACATACATCGTGAAGGAGTG
ACAATTCATCTGTTCGGGAGAAGATGGAACAGGCACCAGAAGCCAAAATC
CTCTACGCGTATGGCATGAGTGCGAGAGTTGATGGAGTAATCTCACGAGA
TGAACGTGATAGCACATGTATAACGCCTCATGCAGTCTTCAACACATGCT
CTCTTGGGGAGTCCATGTTTATGTGTACGAAATATCCCAGCATCAGCTTT
TTATACAGGGGTACATTTGTGAAAATACCCTCGCCACGGCAGTGTCAGGC
CCAGCAAAAGCCACGAAGGGCATTGCCAGCAGTTCACTGCGATTTACGTC
TCCTCTATATTCTACAATCTGAAAAACTCCCTCAGCGGCTCAACAATGAC
AATACCCGAACGGCGTTCTTCGACCGGGGTCCCAAGAGGGGGCACAGTGA
AACGCAAGTGCTGCGCGTATGTATATTTTTATCGACTCGCCAACACTAAC
CCGAACCGTTACACTGGGACACATATATACAAGTTCTCGGTTTTCCTTCT
GCACGTTGTTCAAATGAGCGCAGGAAACGGTCGTCTGTCTGCGAACGATG
CCAACCTTACAACAAACCAAGAGCTTCCATCCCGTGAAAAGCTCGTGCCT
CTTCGACCCTCGCCCTCTTCCTTCTCGCTCTTGAACGAGCGAGGCGAGTT
CCATGCTTCGTACCCTATCATCGCCAATACTGTCAGTGCGGACGATATCC
CAAAGGAAAGCAAGAGGCGGCGTCTGGAGTTGGAGCGCAACGCGAAGATC
TGCGTGGTTGATGATGGTGAGGGAGCCCAATACGAACAGCACAGACGACG
CGCTTGCTCCATGTATCTCCTCACGCGTACTCCCAATGTTGACTCGGAGT
TATCTCGCCATTGTGAGTGGTCTGTATGACGATAAATATTCGATGCACCC
CCATGGACGCATCTAAGCCGTGCGCCCCCCCCCCTGGTTCCCACCGTGTA
GTTTACCGACACTGCACATGCGCCCAGCATAACAACCTCGCACATCCTTC
AAGCAACACCAACCTAGCACATCCACCATGCACACCAACCTAGCACATCC
GCCAAGCAATACCAACCTAGCACATCCACGATGCGCACCAACCTCGCACA
TCCGCCAAGCAATACCAACCTAGCACATCCACCATGCACATCAACTTAGC
ACATCCGCCCGGCACACCAACCTAGCACATCCACCATGCACATCAACTTA
GCACATCCGCCCGGCACACCAACCTAGCAAATCCACCATGCACACCAACC
TAGCGCATCCGCCCAGCACACCAACCTAACTGTTCTCTACATGGGTTTTG
GGTTAGGGTTAGGGTTAGTGTTACTAAATAGATCGACAGAGGCATCATCG
GCTACCGCAGCAGCAGTACTGCTGTATGTACTAGGTACGAAGTATTGATG
GCTACAGTATCATTTGATGTATGATATAATATGATAGCTGCATCATATTA
TACGAACATACGAAGCGTACTGCTATATGTACAGCATAGCAGAAACTAGT
GGGGGGGCGCGTGGCTTTGATGCGTCCCTGGGGGCGCATCGGATTTTTGC
CGTTAAGAGCCAAACTATGGGAAACTTAGCGCCTCAGGAAGTACCGAGGA
ACACCTTGGTAAACTAGTGGTGAGTCACCCCTTCGGGAGAAGAGTCCACA
CGTGCTAGATCATACATCACGAGCTTTCAATATGTCTGTGCAACCATCGA
AACCAAATCATGATTTAAAATATCAGATATGAGGGCAACTGAAACTAGTC
GGTTCTGGTGTGAAGGAGGACAGATCGCCTCCACACTCCAAGCCGTGATT
GTCAGCAGCATGTTATTAGGTTTTAACACTTGTGTAGTGCTTGAAAATAA
TACGCTGTGATGTATATCTCCGTCACTTCCCGTGATCTGGCCCCGCATAT
GGTCTGCACGGCCAACAGGGGCACTTTCGAGAAGCAGCGATTCGACCTCT
GCGACCCCAACTTCTGTGCCGCATCTCCTTTCAGCTGGGCTAGGTACAAT
CCTGCTTTCCAAGATGATCGACTTGAGGTCTGTCAAGCAGCTACAGCTGA
GTTGTTCCTCCGTTTGTGCCGACTGCCGTGAGTGGACCGGTTTCCACGTG
AGAGTCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1170:21428..24135-

>mRNA_P-littoralis_Contig1170.5.1 ID=mRNA_P-littoralis_Contig1170.5.1|Name=mRNA_P-littoralis_Contig1170.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=762bp|location=Sequence derived from alignment at P-littoralis_Contig1170:21428..24135- (Pylaiella littoralis U1_48)
CGCTTAGCTACTACGCTGAACCGCACGCACGATACCATAGGTTCTCGTTG
GTGTTGCTTGAATCTCTTCGTTGTTGCAATGGGCTTAGTAAACAGCAGTC
CGTCTGCGAATGCTGCAACCCTTACAACAAACGAAGAGCTTCGCCTCCGT
GAAGAGCTCGCGCCTCTTCCACCGTCGTCCTCTTCCTCCTCGCTCTTGAA
CGAGCGAGGCAGGTCCCATGCTTCGCATCCTGTCGTCGCCGCTGTCAGCA
GTGCGGATGGTATCTCAAAGATCAGCAAGAGTCAGCGTCTGGAGTTGGCG
AACAATGTGACGATCTGCGCGGCTGGCGATGGAAACGGTCGTCTGTCTGC
GAACGATGCCAACCTTACAACAAACCAAGAGCTTCCATCCCGTGAAAAGC
TCGTGCCTCTTCGACCCTCGCCCTCTTCCTTCTCGCTCTTGAACGAGCGA
GGCGAGTTCCATGCTTCGTACCCTATCATCGCCAATACTGTCAGTGCGGA
CGATATCCCAAAGGAAAGCAAGAGGCGGCGTCTGGAGTTGGAGCGCAACG
CGAAGATCTGCGTGGTTGATGATGGGGCACTTTCGAGAAGCAGCGATTCG
ACCTCTGCGACCCCAACTTCTGTGCCGCATCTCCTTTCAGCTGGGCTAGG
TACAATCCTGCTTTCCAAGATGATCGACTTGAGGTCTGTCAAGCAGCTAC
AGCTGAGTTGTTCCTCCGTTTGTGCCGACTGCCGTGAGTGGACCGGTTTC
CACGTGAGAGTC
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