mRNA_P-littoralis_Contig680.8.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig680.8.1 vs. uniprot
Match: D8LP55_ECTSI (EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP55_ECTSI) HSP 1 Score: 107 bits (266), Expect = 4.460e-26 Identity = 58/136 (42.65%), Postives = 79/136 (58.09%), Query Frame = 2
Query: 23 KHPFLPIWCAKRRTP--YVGSSQNLVSEVRRYISPTAKQVLLHGQSSPCNHCAKCIQLKPFASCDADHIVAVSQGGKTVLENMQLLCVTCHQEKSAHEAAEYTELVDLALLQPGAKDGYIVAAGATQIHFPMDKWT 424
KH FLP++ P Y+G S NL R++++ K +L Q S CN C I++ P+A CDADHI+ V +GGKTV ENM LLC+ CH+ K+ EA VD+AL +PG YI G + +P+DK T
Sbjct: 2 KHLFLPVFSGTGSKPVAYIGPSLNLRPVARKHLTRPQKWAILERQRSRCNSCGDRIRIYPYADCDADHIIGVCRGGKTVPENMNLLCLPCHRRKTCLEAGGLPRTVDVAL-EPGDTSVYIFTEGV--LAYPVDKRT 134
BLAST of mRNA_P-littoralis_Contig680.8.1 vs. uniprot
Match: Q8QNP5_ESV1K (EsV-1-16 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP5_ESV1K) HSP 1 Score: 100 bits (249), Expect = 1.550e-23 Identity = 55/135 (40.74%), Postives = 78/135 (57.78%), Query Frame = 2
Query: 26 HPFLPIWCAKRRTP--YVGSSQNLVSEVRRYISPTAKQVLLHGQSSPCNHCAKCIQLKPFASCDADHIVAVSQGGKTVLENMQLLCVTCHQEKSAHEAAEYTELVDLALLQPGAKDGYIVAAGATQIHFPMDKWT 424
H FLP++ P Y+G S NL R++++ K +L Q S CN I + P+A+CDADHI++V +GGKT+ ENM LLC+ CH+ K+ EA V++AL +PG YI G + FP+DK T
Sbjct: 3 HLFLPVFSGTASKPVAYIGPSHNLRPVARKHLTRPQKWAILERQRSRCNSYGDRIHIYPYANCDADHIISVCRGGKTLPENMNLLCLPCHRRKTCLEAGGLPRTVNVAL-EPGDTSVYIFTEGV--LAFPVDKRT 134
BLAST of mRNA_P-littoralis_Contig680.8.1 vs. uniprot
Match: A0A7M1NXU0_HAEPA (DUF262 domain-containing protein n=5 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A7M1NXU0_HAEPA) HSP 1 Score: 58.2 bits (139), Expect = 6.750e-7 Identity = 31/65 (47.69%), Postives = 38/65 (58.46%), Query Frame = 2
Query: 107 RYISPTAKQVLLHGQSSPCNHCAKCIQLKPFASCDADHIVAVSQGGKTVLENMQLLCVTCHQEKS 301
R S KQ + Q+ C HC + +L DADHIV SQGGKT+LEN Q+LC C+Q KS
Sbjct: 309 RAFSDKDKQKMYQKQNGVCPHCQQKFELSQM---DADHIVPWSQGGKTILENGQMLCKPCNQTKS 370
BLAST of mRNA_P-littoralis_Contig680.8.1 vs. uniprot
Match: A0A495IT67_9SPHI (HNH endonuclease n=1 Tax=Mucilaginibacter gracilis TaxID=423350 RepID=A0A495IT67_9SPHI) HSP 1 Score: 53.5 bits (127), Expect = 7.090e-6 Identity = 25/61 (40.98%), Postives = 35/61 (57.38%), Query Frame = 2
Query: 128 KQVLLHGQSSPCNHCAKCIQLKPFASCDADHIVAVSQGGKTVLENMQLLCVTCHQEKSAHE 310
KQ L+ CNHC + + + DHI+ + GG +VLEN+QLLCV CH+ K+ E
Sbjct: 85 KQQLIDRDGQLCNHCREPFEWRQLTF---DHIIRLEDGGTSVLENLQLLCVPCHEAKTQQE 142
BLAST of mRNA_P-littoralis_Contig680.8.1 vs. uniprot
Match: A0A1H9CZ68_9FLAO (HNH endonuclease n=1 Tax=Hyunsoonleella jejuensis TaxID=419940 RepID=A0A1H9CZ68_9FLAO) HSP 1 Score: 54.3 bits (129), Expect = 1.420e-5 Identity = 26/77 (33.77%), Postives = 43/77 (55.84%), Query Frame = 2
Query: 104 RRYISPTAKQVLLHGQSSPCNHCAKCIQLKPFASCDADHIVAVSQGGKTVLENMQLLCVTCHQEKSAHEAAEYTELV 334
R ++P + ++ C +C + +P + DHI+ VS+GGKT +EN+Q LC C++ K A + EY EL+
Sbjct: 280 RALMTPNLRDLIKERDDYKCCNCGNGTENEPNLLLEIDHIIPVSKGGKTTVENLQTLCWKCNRSKGA-KVDEYAELI 355
BLAST of mRNA_P-littoralis_Contig680.8.1 vs. uniprot
Match: A0A7Y5KCT3_9BACT (HNH endonuclease n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A7Y5KCT3_9BACT) HSP 1 Score: 51.2 bits (121), Expect = 3.600e-5 Identity = 31/111 (27.93%), Postives = 54/111 (48.65%), Query Frame = 2
Query: 110 YISPTAKQVLLHGQSSPCNHCAKCIQLKPFASCDADHIVAVSQGGKTVLENMQLLCVTCHQEKSAHEAAEYTELVDLALLQPGAKDGYIVAAGATQIHFPM-DKWTKGPRW 439
YI +++++ + C +C + Q++ A+ DHI+ + QGGKT++EN+ L C++C S H+AA + L IV+ Q++ P D W W
Sbjct: 3 YIPANLRRLVIQRAGARCEYC-RLAQVRQEATFHIDHILPIKQGGKTIVENLALACMSC----SLHKAARFKALD-------------IVSGDDVQLYNPRRDSWNTHFEW 95
BLAST of mRNA_P-littoralis_Contig680.8.1 vs. uniprot
Match: A0A7V6LGW3_9BACT (HNH endonuclease n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7V6LGW3_9BACT) HSP 1 Score: 48.9 bits (115), Expect = 6.360e-5 Identity = 27/66 (40.91%), Postives = 35/66 (53.03%), Query Frame = 2
Query: 107 RYISPTAKQVLLHGQSSPCNHCAKCIQLKPFASCDADHIVAVSQGGKTVLENMQLLCVTCHQEKSA 304
R +P K+ Q C+ C K Q A +ADHI S+GGKT LEN Q+LC C++ K A
Sbjct: 6 RAFTPAQKRSAYERQKGKCSLCRKQFQ---EAEMEADHITPWSEGGKTGLENCQMLCRECNRRKGA 68 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig680.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig680.8.1 >prot_P-littoralis_Contig680.8.1 ID=prot_P-littoralis_Contig680.8.1|Name=mRNA_P-littoralis_Contig680.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp MIAKQNGQAPLSSDLVRQETDAVRRFIAKSCVRGAAIHIPDRETSAAARPback to top mRNA from alignment at P-littoralis_Contig680:15031..15531- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig680.8.1 ID=mRNA_P-littoralis_Contig680.8.1|Name=mRNA_P-littoralis_Contig680.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=501bp|location=Sequence derived from alignment at P-littoralis_Contig680:15031..15531- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig680:15031..15531- >mRNA_P-littoralis_Contig680.8.1 ID=mRNA_P-littoralis_Contig680.8.1|Name=mRNA_P-littoralis_Contig680.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig680:15031..15531- (Pylaiella littoralis U1_48)back to top |