mRNA_P-littoralis_Contig680.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig680.8.1
Unique NamemRNA_P-littoralis_Contig680.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig680.8.1 vs. uniprot
Match: D8LP55_ECTSI (EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP55_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 4.460e-26
Identity = 58/136 (42.65%), Postives = 79/136 (58.09%), Query Frame = 2
Query:   23 KHPFLPIWCAKRRTP--YVGSSQNLVSEVRRYISPTAKQVLLHGQSSPCNHCAKCIQLKPFASCDADHIVAVSQGGKTVLENMQLLCVTCHQEKSAHEAAEYTELVDLALLQPGAKDGYIVAAGATQIHFPMDKWT 424
            KH FLP++      P  Y+G S NL    R++++   K  +L  Q S CN C   I++ P+A CDADHI+ V +GGKTV ENM LLC+ CH+ K+  EA      VD+AL +PG    YI   G   + +P+DK T
Sbjct:    2 KHLFLPVFSGTGSKPVAYIGPSLNLRPVARKHLTRPQKWAILERQRSRCNSCGDRIRIYPYADCDADHIIGVCRGGKTVPENMNLLCLPCHRRKTCLEAGGLPRTVDVAL-EPGDTSVYIFTEGV--LAYPVDKRT 134          
BLAST of mRNA_P-littoralis_Contig680.8.1 vs. uniprot
Match: Q8QNP5_ESV1K (EsV-1-16 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP5_ESV1K)

HSP 1 Score: 100 bits (249), Expect = 1.550e-23
Identity = 55/135 (40.74%), Postives = 78/135 (57.78%), Query Frame = 2
Query:   26 HPFLPIWCAKRRTP--YVGSSQNLVSEVRRYISPTAKQVLLHGQSSPCNHCAKCIQLKPFASCDADHIVAVSQGGKTVLENMQLLCVTCHQEKSAHEAAEYTELVDLALLQPGAKDGYIVAAGATQIHFPMDKWT 424
            H FLP++      P  Y+G S NL    R++++   K  +L  Q S CN     I + P+A+CDADHI++V +GGKT+ ENM LLC+ CH+ K+  EA      V++AL +PG    YI   G   + FP+DK T
Sbjct:    3 HLFLPVFSGTASKPVAYIGPSHNLRPVARKHLTRPQKWAILERQRSRCNSYGDRIHIYPYANCDADHIISVCRGGKTLPENMNLLCLPCHRRKTCLEAGGLPRTVNVAL-EPGDTSVYIFTEGV--LAFPVDKRT 134          
BLAST of mRNA_P-littoralis_Contig680.8.1 vs. uniprot
Match: A0A7M1NXU0_HAEPA (DUF262 domain-containing protein n=5 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A7M1NXU0_HAEPA)

HSP 1 Score: 58.2 bits (139), Expect = 6.750e-7
Identity = 31/65 (47.69%), Postives = 38/65 (58.46%), Query Frame = 2
Query:  107 RYISPTAKQVLLHGQSSPCNHCAKCIQLKPFASCDADHIVAVSQGGKTVLENMQLLCVTCHQEKS 301
            R  S   KQ +   Q+  C HC +  +L      DADHIV  SQGGKT+LEN Q+LC  C+Q KS
Sbjct:  309 RAFSDKDKQKMYQKQNGVCPHCQQKFELSQM---DADHIVPWSQGGKTILENGQMLCKPCNQTKS 370          
BLAST of mRNA_P-littoralis_Contig680.8.1 vs. uniprot
Match: A0A495IT67_9SPHI (HNH endonuclease n=1 Tax=Mucilaginibacter gracilis TaxID=423350 RepID=A0A495IT67_9SPHI)

HSP 1 Score: 53.5 bits (127), Expect = 7.090e-6
Identity = 25/61 (40.98%), Postives = 35/61 (57.38%), Query Frame = 2
Query:  128 KQVLLHGQSSPCNHCAKCIQLKPFASCDADHIVAVSQGGKTVLENMQLLCVTCHQEKSAHE 310
            KQ L+      CNHC +  + +       DHI+ +  GG +VLEN+QLLCV CH+ K+  E
Sbjct:   85 KQQLIDRDGQLCNHCREPFEWRQLTF---DHIIRLEDGGTSVLENLQLLCVPCHEAKTQQE 142          
BLAST of mRNA_P-littoralis_Contig680.8.1 vs. uniprot
Match: A0A1H9CZ68_9FLAO (HNH endonuclease n=1 Tax=Hyunsoonleella jejuensis TaxID=419940 RepID=A0A1H9CZ68_9FLAO)

HSP 1 Score: 54.3 bits (129), Expect = 1.420e-5
Identity = 26/77 (33.77%), Postives = 43/77 (55.84%), Query Frame = 2
Query:  104 RRYISPTAKQVLLHGQSSPCNHCAKCIQLKPFASCDADHIVAVSQGGKTVLENMQLLCVTCHQEKSAHEAAEYTELV 334
            R  ++P  + ++       C +C    + +P    + DHI+ VS+GGKT +EN+Q LC  C++ K A +  EY EL+
Sbjct:  280 RALMTPNLRDLIKERDDYKCCNCGNGTENEPNLLLEIDHIIPVSKGGKTTVENLQTLCWKCNRSKGA-KVDEYAELI 355          
BLAST of mRNA_P-littoralis_Contig680.8.1 vs. uniprot
Match: A0A7Y5KCT3_9BACT (HNH endonuclease n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A7Y5KCT3_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 3.600e-5
Identity = 31/111 (27.93%), Postives = 54/111 (48.65%), Query Frame = 2
Query:  110 YISPTAKQVLLHGQSSPCNHCAKCIQLKPFASCDADHIVAVSQGGKTVLENMQLLCVTCHQEKSAHEAAEYTELVDLALLQPGAKDGYIVAAGATQIHFPM-DKWTKGPRW 439
            YI    +++++    + C +C +  Q++  A+   DHI+ + QGGKT++EN+ L C++C    S H+AA +  L              IV+    Q++ P  D W     W
Sbjct:    3 YIPANLRRLVIQRAGARCEYC-RLAQVRQEATFHIDHILPIKQGGKTIVENLALACMSC----SLHKAARFKALD-------------IVSGDDVQLYNPRRDSWNTHFEW 95          
BLAST of mRNA_P-littoralis_Contig680.8.1 vs. uniprot
Match: A0A7V6LGW3_9BACT (HNH endonuclease n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7V6LGW3_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 6.360e-5
Identity = 27/66 (40.91%), Postives = 35/66 (53.03%), Query Frame = 2
Query:  107 RYISPTAKQVLLHGQSSPCNHCAKCIQLKPFASCDADHIVAVSQGGKTVLENMQLLCVTCHQEKSA 304
            R  +P  K+     Q   C+ C K  Q    A  +ADHI   S+GGKT LEN Q+LC  C++ K A
Sbjct:    6 RAFTPAQKRSAYERQKGKCSLCRKQFQ---EAEMEADHITPWSEGGKTGLENCQMLCRECNRRKGA 68          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig680.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LP55_ECTSI4.460e-2642.65EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNP5_ESV1K1.550e-2340.74EsV-1-16 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
A0A7M1NXU0_HAEPA6.750e-747.69DUF262 domain-containing protein n=5 Tax=Gammaprot... [more]
A0A495IT67_9SPHI7.090e-640.98HNH endonuclease n=1 Tax=Mucilaginibacter gracilis... [more]
A0A1H9CZ68_9FLAO1.420e-533.77HNH endonuclease n=1 Tax=Hyunsoonleella jejuensis ... [more]
A0A7Y5KCT3_9BACT3.600e-527.93HNH endonuclease n=1 Tax=candidate division KSB1 b... [more]
A0A7V6LGW3_9BACT6.360e-540.91HNH endonuclease n=1 Tax=Lentisphaerae bacterium T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig680contigP-littoralis_Contig680:15031..15531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size501
Hectar predicted targeting categoryother localisation
Exons1
Cds size318
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791415.8310428-UTR-P-littoralis_Contig680:15030..152131680791415.8310428-UTR-P-littoralis_Contig680:15030..15213Pylaiella littoralis U1_48UTRP-littoralis_Contig680 15031..15213 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791415.8488317-CDS-P-littoralis_Contig680:15213..155311680791415.8488317-CDS-P-littoralis_Contig680:15213..15531Pylaiella littoralis U1_48CDSP-littoralis_Contig680 15214..15531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig680.8.1prot_P-littoralis_Contig680.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig680 15214..15531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig680.8.1

>prot_P-littoralis_Contig680.8.1 ID=prot_P-littoralis_Contig680.8.1|Name=mRNA_P-littoralis_Contig680.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
MIAKQNGQAPLSSDLVRQETDAVRRFIAKSCVRGAAIHIPDRETSAAARP
ELTMQSLRQMYPTQTLRKLRRRSHRRRQSGRENGARKHAAPVCDMPPREV
GTRGG*
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mRNA from alignment at P-littoralis_Contig680:15031..15531-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig680.8.1 ID=mRNA_P-littoralis_Contig680.8.1|Name=mRNA_P-littoralis_Contig680.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=501bp|location=Sequence derived from alignment at P-littoralis_Contig680:15031..15531- (Pylaiella littoralis U1_48)
ATGATTGCAAAGCAAAATGGCCAAGCACCCCTTTCTTCCGATCTGGTGCG CCAAGAGACGGACGCCGTACGTCGGTTCATCGCAAAATCTTGTGTCCGAG GTGCGGCGATACATATCCCCGACCGCGAAACAAGTGCTGCTGCACGGCCA GAGCTCACCATGCAATCATTGCGCCAAATGTATCCAACTCAAACCCTTCG CAAGCTGCGACGCCGATCACATCGTCGCCGTCAGTCAGGGAGGGAAAACG GTGCTCGAAAACATGCAGCTCCTGTGTGTGACATGCCACCAAGAGAAGTC GGCACACGAGGCGGCTGAATATACCGAGCTCGTTGATTTGGCGTTGTTGC AACCCGGCGCCAAGGACGGTTACATCGTCGCAGCCGGGGCAACACAGATA CACTTCCCAATGGACAAATGGACAAAAGGACCCCGCTGGAGGCGATCGAA AACGGGTATGGGCTGTCGCTTTTAACGTTCGCACGAGTAAACAGAGTGTT C
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Coding sequence (CDS) from alignment at P-littoralis_Contig680:15031..15531-

>mRNA_P-littoralis_Contig680.8.1 ID=mRNA_P-littoralis_Contig680.8.1|Name=mRNA_P-littoralis_Contig680.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig680:15031..15531- (Pylaiella littoralis U1_48)
ATGATTGCAAAGCAAAATGGCCAAGCACCCCTTTCTTCCGATCTGGTGCG
CCAAGAGACGGACGCCGTACGTCGGTTCATCGCAAAATCTTGTGTCCGAG
GTGCGGCGATACATATCCCCGACCGCGAAACAAGTGCTGCTGCACGGCCA
GAGCTCACCATGCAATCATTGCGCCAAATGTATCCAACTCAAACCCTTCG
CAAGCTGCGACGCCGATCACATCGTCGCCGTCAGTCAGGGAGGGAAAACG
GTGCTCGAAAACATGCAGCTCCTGTGTGTGACATGCCACCAAGAGAAGTC
GGCACACGAGGCGGCTGA
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