mRNA_P-littoralis_Contig117.139.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig117.139.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE) HSP 1 Score: 147 bits (371), Expect = 4.110e-37 Identity = 90/214 (42.06%), Postives = 132/214 (61.68%), Query Frame = 1
Query: 1 MAPRHRKLVVQAELACVDLSTMLEPLHAKFPDLLLLAISFKDG*VWCFIQFKEFVSP---AKLRSVWKDDIDIIYTSPYIKVDGKIQDE*RSKPARRKTIITKPDTHAIIVHPVGDKSMQHVTREDVVGLLEQTLNIDVFFKFGL---NCPRSTKT*TFGHRDTVRISDACC**MNHHRPRTQQVHRVR*YLE---NLVEKTCEAVEIFREDIT 615
MAPRHRKLVV+AE +CVDL +LEP+ A P LLLLAI+F DG V ++Q E VS A+L +++ +D+ SPY ++G++Q+E R K R + DT I+V+P+G++S+QH+TRE VV LL+QTLN+ VFFKFGL + P++ T + VR+ + + V + Y E LVEKT EAVE++++ ++
Sbjct: 1 MAPRHRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRT---------KDKWITVSKDEAYDEILFMLVEKTHEAVEMYKDGVS 205
BLAST of mRNA_P-littoralis_Contig117.139.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 135 bits (339), Expect = 4.040e-32 Identity = 85/208 (40.87%), Postives = 126/208 (60.58%), Query Frame = 1
Query: 19 KLVVQAELACVDLSTMLEPLHAKFPDLLLLAISFKDG*VWCFIQFKEFVSP---AKLRSVWKDDIDIIYTSPYIKVDGKIQDE*RSKPARRKTIITKPDTHAIIVHPVGDKSMQHVTREDVVGLLEQTLNIDVFFKFGL---NCPRSTKT*TFGHRDTVRISDACC**MNHHRPRTQQVHRVR*YLE---NLVEKTCEAVEIFREDIT 615
KLVV+AE +CVDL +LEP+ A P LLLLAI+F DG V ++Q E VS A+L +++ +D+ SPY ++G++Q+E R K R + DT I+V+P+G++S+QH+TRE VV LL+QTLN+ VFFKFGL + P++ T + VR+ + + V + Y E LVEKT EAVE++R+ ++
Sbjct: 2135 KLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRT---------KDKWITVSKDEAYDEILFMLVEKTHEAVEMYRDGVS 2333
BLAST of mRNA_P-littoralis_Contig117.139.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K) HSP 1 Score: 127 bits (319), Expect = 9.150e-31 Identity = 77/206 (37.38%), Postives = 115/206 (55.83%), Query Frame = 1
Query: 1 MAPRHRKLVVQAELACVDLSTMLEPLHAKFPDLLLLAISFKDG*VWCFIQFKEFVSPAKLRSVWKDDIDIIYTSPYIKVDGKIQDE*RSKPAR-RKTIITKPDTHAIIVHPVGDKSMQHVTREDVVGLLEQTLNIDVFFKFGLNCPRSTKT*TFGHRDTVRISDACC**MNHHR-PRTQQVHRVR*YLENLVEKTCEAVEIFREDI 612
MA R+RKL ++A L+C DLST+LE + + P L+ L I ++DG V+ ++Q E +S L + + I++ S Y G++Q+E R+KP R K + K DT A+ V+P+G +S+QH+T V LL IDVF+KFGL + F R + + CC PR + + L+ LVEKT EAV +FR+ I
Sbjct: 99 MALRNRKLAIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDTMLTKALEGHMVIVHISTYDAPVGELQEEWRAKPVRGNKKVEVKADTTAVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEI---LQILVEKTREAVSMFRQTI 301
BLAST of mRNA_P-littoralis_Contig117.139.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI) HSP 1 Score: 122 bits (305), Expect = 1.490e-29 Identity = 76/206 (36.89%), Postives = 114/206 (55.34%), Query Frame = 1
Query: 1 MAPRHRKLVVQAELACVDLSTMLEPLHAKFPDLLLLAISFKDG*VWCFIQFKEFVSPAKLRSVWKDDIDIIYTSPYIKVDGKIQDE*RSKPAR-RKTIITKPDTHAIIVHPVGDKSMQHVTREDVVGLLEQTLNIDVFFKFGLNCPRSTKT*TFGHRDTVRISDACC**MNHHR-PRTQQVHRVR*YLENLVEKTCEAVEIFREDI 612
M R+RKLV++A L+C DLST+LE + + P L+ L I ++DG V+ ++Q E +S L + + I + S Y G++Q+E R+KP R K I K DT A+ V+P+G +S++H++ V LL IDVF+KFGL + F R + + CC PR + + L+ LVEKT EAV +FR+ I
Sbjct: 1 MVLRNRKLVIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDIMLTKALEGHMVIEHISTYDAPGGELQEEWRAKPVRGNKKIEIKSDTTAVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEI---LQILVEKTREAVSMFRQTI 203
BLAST of mRNA_P-littoralis_Contig117.139.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 6.830e-12 Identity = 50/143 (34.97%), Postives = 71/143 (49.65%), Query Frame = 1
Query: 1 MAPRHRKLVVQAELACVDLSTMLEPLHAKFPDLLLLAISFKDG*VWCFIQFKEFVSPAKLRSVWKDDIDIIYTSPY-IKVDGKIQDE*RSKPARRKTIITKPDTHAIIVHPVGDKSMQHVTREDVVGLLEQTLNIDVFFKFGL 426
+A HRKL VQA+ +C DLST+LEP+ ++P+L+ L I F DG V+ ++Q E +S KL S KD + I +PY I + G RS GD + E + LL +DVF+KFG+
Sbjct: 6 VAVHHRKLRVQADPSCFDLSTVLEPVRTEYPNLIYLGIWFHDGSVYVYVQSAERMSDIKLTSALKDHMVITNIAPYSIPLLGSCN---RS----------------------GDPRL-----EFIADLLNTLHGVDVFYKFGI 118 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig117.139.1 >prot_P-littoralis_Contig117.139.1 ID=prot_P-littoralis_Contig117.139.1|Name=mRNA_P-littoralis_Contig117.139.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp MNFRAQRHRQDIRCVLLMNEPPQTKNSTSTSCTMISGKPSREDMRGCRNIback to top mRNA from alignment at P-littoralis_Contig117:461749..462551+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig117.139.1 ID=mRNA_P-littoralis_Contig117.139.1|Name=mRNA_P-littoralis_Contig117.139.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=803bp|location=Sequence derived from alignment at P-littoralis_Contig117:461749..462551+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig117:461749..462551+ >mRNA_P-littoralis_Contig117.139.1 ID=mRNA_P-littoralis_Contig117.139.1|Name=mRNA_P-littoralis_Contig117.139.1|organism=Pylaiella littoralis U1_48|type=CDS|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig117:461749..462551+ (Pylaiella littoralis U1_48)back to top |