mRNA_P-littoralis_Contig117.139.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig117.139.1
Unique NamemRNA_P-littoralis_Contig117.139.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig117.139.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 4.110e-37
Identity = 90/214 (42.06%), Postives = 132/214 (61.68%), Query Frame = 1
Query:    1 MAPRHRKLVVQAELACVDLSTMLEPLHAKFPDLLLLAISFKDG*VWCFIQFKEFVSP---AKLRSVWKDDIDIIYTSPYIKVDGKIQDE*RSKPARRKTIITKPDTHAIIVHPVGDKSMQHVTREDVVGLLEQTLNIDVFFKFGL---NCPRSTKT*TFGHRDTVRISDACC**MNHHRPRTQQVHRVR*YLE---NLVEKTCEAVEIFREDIT 615
            MAPRHRKLVV+AE +CVDL  +LEP+ A  P LLLLAI+F DG V  ++Q  E VS    A+L  +++  +D+   SPY  ++G++Q+E R K  R  +     DT  I+V+P+G++S+QH+TRE VV LL+QTLN+ VFFKFGL   + P++    T  +   VR+           + +   V +   Y E    LVEKT EAVE++++ ++
Sbjct:    1 MAPRHRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRT---------KDKWITVSKDEAYDEILFMLVEKTHEAVEMYKDGVS 205          
BLAST of mRNA_P-littoralis_Contig117.139.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 4.040e-32
Identity = 85/208 (40.87%), Postives = 126/208 (60.58%), Query Frame = 1
Query:   19 KLVVQAELACVDLSTMLEPLHAKFPDLLLLAISFKDG*VWCFIQFKEFVSP---AKLRSVWKDDIDIIYTSPYIKVDGKIQDE*RSKPARRKTIITKPDTHAIIVHPVGDKSMQHVTREDVVGLLEQTLNIDVFFKFGL---NCPRSTKT*TFGHRDTVRISDACC**MNHHRPRTQQVHRVR*YLE---NLVEKTCEAVEIFREDIT 615
            KLVV+AE +CVDL  +LEP+ A  P LLLLAI+F DG V  ++Q  E VS    A+L  +++  +D+   SPY  ++G++Q+E R K  R  +     DT  I+V+P+G++S+QH+TRE VV LL+QTLN+ VFFKFGL   + P++    T  +   VR+           + +   V +   Y E    LVEKT EAVE++R+ ++
Sbjct: 2135 KLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRT---------KDKWITVSKDEAYDEILFMLVEKTHEAVEMYRDGVS 2333          
BLAST of mRNA_P-littoralis_Contig117.139.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K)

HSP 1 Score: 127 bits (319), Expect = 9.150e-31
Identity = 77/206 (37.38%), Postives = 115/206 (55.83%), Query Frame = 1
Query:    1 MAPRHRKLVVQAELACVDLSTMLEPLHAKFPDLLLLAISFKDG*VWCFIQFKEFVSPAKLRSVWKDDIDIIYTSPYIKVDGKIQDE*RSKPAR-RKTIITKPDTHAIIVHPVGDKSMQHVTREDVVGLLEQTLNIDVFFKFGLNCPRSTKT*TFGHRDTVRISDACC**MNHHR-PRTQQVHRVR*YLENLVEKTCEAVEIFREDI 612
            MA R+RKL ++A L+C DLST+LE +  + P L+ L I ++DG V+ ++Q  E +S   L    +  + I++ S Y    G++Q+E R+KP R  K +  K DT A+ V+P+G +S+QH+T   V  LL     IDVF+KFGL      +   F  R   + +  CC        PR +    +   L+ LVEKT EAV +FR+ I
Sbjct:   99 MALRNRKLAIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDTMLTKALEGHMVIVHISTYDAPVGELQEEWRAKPVRGNKKVEVKADTTAVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEI---LQILVEKTREAVSMFRQTI 301          
BLAST of mRNA_P-littoralis_Contig117.139.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.490e-29
Identity = 76/206 (36.89%), Postives = 114/206 (55.34%), Query Frame = 1
Query:    1 MAPRHRKLVVQAELACVDLSTMLEPLHAKFPDLLLLAISFKDG*VWCFIQFKEFVSPAKLRSVWKDDIDIIYTSPYIKVDGKIQDE*RSKPAR-RKTIITKPDTHAIIVHPVGDKSMQHVTREDVVGLLEQTLNIDVFFKFGLNCPRSTKT*TFGHRDTVRISDACC**MNHHR-PRTQQVHRVR*YLENLVEKTCEAVEIFREDI 612
            M  R+RKLV++A L+C DLST+LE +  + P L+ L I ++DG V+ ++Q  E +S   L    +  + I + S Y    G++Q+E R+KP R  K I  K DT A+ V+P+G +S++H++   V  LL     IDVF+KFGL      +   F  R   + +  CC        PR +    +   L+ LVEKT EAV +FR+ I
Sbjct:    1 MVLRNRKLVIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDIMLTKALEGHMVIEHISTYDAPGGELQEEWRAKPVRGNKKIEIKSDTTAVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEI---LQILVEKTREAVSMFRQTI 203          
BLAST of mRNA_P-littoralis_Contig117.139.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.830e-12
Identity = 50/143 (34.97%), Postives = 71/143 (49.65%), Query Frame = 1
Query:    1 MAPRHRKLVVQAELACVDLSTMLEPLHAKFPDLLLLAISFKDG*VWCFIQFKEFVSPAKLRSVWKDDIDIIYTSPY-IKVDGKIQDE*RSKPARRKTIITKPDTHAIIVHPVGDKSMQHVTREDVVGLLEQTLNIDVFFKFGL 426
            +A  HRKL VQA+ +C DLST+LEP+  ++P+L+ L I F DG V+ ++Q  E +S  KL S  KD + I   +PY I + G      RS                      GD  +     E +  LL     +DVF+KFG+
Sbjct:    6 VAVHHRKLRVQADPSCFDLSTVLEPVRTEYPNLIYLGIWFHDGSVYVYVQSAERMSDIKLTSALKDHMVITNIAPYSIPLLGSCN---RS----------------------GDPRL-----EFIADLLNTLHGVDVFYKFGI 118          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KC66_9PHAE4.110e-3742.06Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JH58_9PHAE4.040e-3240.87Reverse transcriptase domain-containing protein n=... [more]
Q8QN59_ESV1K9.150e-3137.38EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LP42_ECTSI1.490e-2936.89EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K135_9PHAE6.830e-1234.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig117contigP-littoralis_Contig117:461749..462551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size803
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789490.1337729-UTR-P-littoralis_Contig117:461748..4621971680789490.1337729-UTR-P-littoralis_Contig117:461748..462197Pylaiella littoralis U1_48UTRP-littoralis_Contig117 461749..462197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789490.1446776-CDS-P-littoralis_Contig117:462197..4625511680789490.1446776-CDS-P-littoralis_Contig117:462197..462551Pylaiella littoralis U1_48CDSP-littoralis_Contig117 462198..462551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig117.139.1prot_P-littoralis_Contig117.139.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig117 462198..462551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig117.139.1

>prot_P-littoralis_Contig117.139.1 ID=prot_P-littoralis_Contig117.139.1|Name=mRNA_P-littoralis_Contig117.139.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp
MNFRAQRHRQDIRCVLLMNEPPQTKNSTSTSCTMISGKPSREDMRGCRNI
QGRHNHFSMCAHDIFENRDSTHLKSRRAYEQARNKGLDDIAVMITDRVKR
LRSWSTRKIKLVQIIIP*
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mRNA from alignment at P-littoralis_Contig117:461749..462551+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig117.139.1 ID=mRNA_P-littoralis_Contig117.139.1|Name=mRNA_P-littoralis_Contig117.139.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=803bp|location=Sequence derived from alignment at P-littoralis_Contig117:461749..462551+ (Pylaiella littoralis U1_48)
ATGGCGCCGCGTCACAGAAAGCTCGTGGTACAGGCGGAACTTGCTTGTGT TGATTTGAGCACCATGCTAGAACCTCTCCACGCGAAGTTCCCGGACCTCC TCCTTTTAGCGATATCCTTTAAGGATGGTTAGGTGTGGTGTTTTATTCAA TTCAAGGAGTTCGTGTCCCCTGCCAAACTCAGAAGTGTTTGGAAGGATGA CATAGACATTATTTATACCTCCCCGTATATTAAGGTGGACGGTAAAATCC AGGATGAATAGCGGTCGAAACCAGCGCGTAGAAAGACAATCATCACCAAG CCAGACACCCACGCCATAATCGTGCACCCCGTGGGCGACAAATCTATGCA ACACGTCACGCGAGAGGACGTGGTGGGCCTTCTGGAACAAACGCTCAACA TCGATGTATTCTTCAAGTTTGGGCTAAACTGTCCTCGCTCGACCAAAACA TGAACTTTCGGGCACAGAGACACCGTCAGGATATCCGATGCGTGCTGCTG ATGAATGAACCACCACAGACCAAGAACTCAACAAGTACATCGTGTACGAT GATATCTGGAAAACCTAGTCGAGAAGACATGCGAGGCTGTCGAAATATTC AGGGAAGACATAACCATTTCAGCATGTGTGCACATGATATATTTGAAAAC AGGGACTCAACCCACCTCAAGAGTAGGAGGGCATATGAGCAAGCTCGCAA CAAGGGATTGGACGACATAGCCGTGATGATTACGGACAGAGTAAAACGGC TGCGTAGCTGGAGTACCAGAAAAATAAAGCTCGTCCAAATAATAATTCCC TAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig117:461749..462551+

>mRNA_P-littoralis_Contig117.139.1 ID=mRNA_P-littoralis_Contig117.139.1|Name=mRNA_P-littoralis_Contig117.139.1|organism=Pylaiella littoralis U1_48|type=CDS|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig117:461749..462551+ (Pylaiella littoralis U1_48)
ATGAACTTTCGGGCACAGAGACACCGTCAGGATATCCGATGCGTGCTGCT
GATGAATGAACCACCACAGACCAAGAACTCAACAAGTACATCGTGTACGA
TGATATCTGGAAAACCTAGTCGAGAAGACATGCGAGGCTGTCGAAATATT
CAGGGAAGACATAACCATTTCAGCATGTGTGCACATGATATATTTGAAAA
CAGGGACTCAACCCACCTCAAGAGTAGGAGGGCATATGAGCAAGCTCGCA
ACAAGGGATTGGACGACATAGCCGTGATGATTACGGACAGAGTAAAACGG
CTGCGTAGCTGGAGTACCAGAAAAATAAAGCTCGTCCAAATAATAATTCC
CTAG
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