mRNA_P-littoralis_Contig678.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig678.34.1
Unique NamemRNA_P-littoralis_Contig678.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig678.34.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 312 bits (799), Expect = 1.780e-96
Identity = 185/454 (40.75%), Postives = 258/454 (56.83%), Query Frame = 1
Query:   64 DGHPVGRRGAGKVFGIDKKLIRDWESQEAEL-VAFSKKENASKQRSLHTGREADTKEVEVAIVDEINTLRKNGAA-VTRDLVMAKLLSEMPTFSGGMPSHDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGAKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLMVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSED 1248
            DG PVG  GA KV  + +K I +W   EA+L    S     SK + +H+G +  T + E      ++      A  +    VM KLL   P   GGMP++ +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KL  +L + A E                               +F  + NMDQ P+Q EMP +TT++KTGAK A I+TGG  EK R+T+VLAV  DG+KV PRII++G PF+  T +                         G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH +E F   L   A T+++ + GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W++I+  T+++C K+CGLTL LDGSED
Sbjct:  113 DGQPVGNNGAAKVLQVPRKRIIEWLKPEAQLREKVSANPKLSKAKQVHSGGKVSTVDAEQPFPCGLHQRATQAAPRLGNREVMNKLLELKPDALGGMPANAKPEEAIDFKFKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSPSAVADARSG-KLKPPERGVVSTWCKEAWESITPETVKTCSKICGLTLALDGSED 565          
BLAST of mRNA_P-littoralis_Contig678.34.1 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 305 bits (782), Expect = 7.460e-95
Identity = 193/473 (40.80%), Postives = 257/473 (54.33%), Query Frame = 1
Query:    7 AYENAQKLEVLKFSRLTCGDGHPVGRRGAGKVFGIDKKLIRDWESQEAELVAFSK-KENASKQRSLHTGREADTKEVEVAIVDEINTLRKNGAAVTRDLVMAKLLSEMPTFSGGMPSHDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGAKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLMVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSED 1248
            +Y    KL+ + F+R+ C DG PVG  GA KV  +D++ I  W  +EA +    K K   SK +S+H G    T EVE  + D IN  R+         VM KLL   P   GG+ +    E+   F+ +F  WY+RF +RH  SIRR+TSVGQK P G+EG A+A + KLR++L E A E                               +F  L NMDQTP+Q EMP +TT+EK GAK A I+TGG+ EK R+T+ LAV  DG KV  RII+KG PF+                            NFGYP  G+S GVQ+ SW D  +   W+++ +  RP  GS  + QR S+LVLDDFR +              T ++++ GGLTP+ QPLDR ++KE KR +R RYT ++       ++G K+  P RGLV+TW KE W  I+  T++ CFKVCGLTL LDGSED
Sbjct:   74 SYPMRFKLKAVAFTRVLCEDGQPVGNSGAAKVLAVDRRRIITWVGEEATMKNLVKEKPKLSKAKSIHAGVAPPTAEVEQDLEDYINEQRREHRGCGSMEVMNKLLELKPDALGGLTAAASAEETLAFRTKFKNWYHRFRERHGLSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGK-EKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIK-QRHSILVLDDFRTN--------------TTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQYMASAIADPKTG-KLQPPGRGLVSTWCKESWAAITAETVKMCFKVCGLTLALDGSED 529          
BLAST of mRNA_P-littoralis_Contig678.34.1 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 305 bits (780), Expect = 7.560e-94
Identity = 196/481 (40.75%), Postives = 262/481 (54.47%), Query Frame = 1
Query:   25 KLEVLKFSRLTCG-DGHPVGRRGAGKVFGIDKKLIRDWESQEAEL-VAFSKKENASKQRSLHTGREADTKEVEVAIVDEINTLRKNGAAVTRDLVMAKLLSEMPTFSGGMPSHDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGAKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV---------------------------------GGTNNFGYPA----GGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLMVMLGGGLTPVCQPLDRNINKEFKRGVRARYT----SWIRDNYGRSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSE 1245
            KL    ++R  C  DG PVG  GA  V  +  K I +W  QE +L    S     SK + +H+G +A T + E A+VD +N  RK         VM KLL   P   GGM ++ +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L + A E                               +F  L NMDQTP+Q EMP +TT+EKTGAK A I+TGGE EK R+T+VLAV  DG+KV PRII+KG PF+                                 GG  N   P     G   +   + SW D  + + W+   +  RP + S   QRP +LVLDDF+CH++E F   L   AKT+ + + GGLT + QPLDR +NK+ KR +R +YT    S + D   RSG K+  P  G+V+TW KE W++I+ +T+ +CFK+CGLTL LDGSE
Sbjct:   88 KLNAATYTRKICPCDGQPVGNNGAAIVLQVPWKRIIEWLKQEEQLREKVSANPKLSKAKQVHSGGKASTVDAEQALVDYMNEQRKQHRDCGNREVMNKLLELKPDALGGMSTNAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGE-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKVKSTLPRKNSVAWEIHSANXARSGCHGGRQNDVSPRIIFKGTPFIPPTEKSWSDQRECNGWIPGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRGAKTV-IFIPGGLTSLLQPLDRMLNKQMKRLLRGKYTACSASAVAD--ARSG-KLNPPEHGVVSTWCKEAWESITSKTVETCFKICGLTLALDGSE 563          
BLAST of mRNA_P-littoralis_Contig678.34.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 301 bits (772), Expect = 3.460e-93
Identity = 186/458 (40.61%), Postives = 257/458 (56.11%), Query Frame = 1
Query:   76 VGRRGAGKV-FGIDKKLIRDWESQEAEL-VAFSKKENASKQRSLHTGREADTKEVEVAIVDEINTLRKNGAAVTRDLVMAKLLSEMPTFSGGMPSHDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGAKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDF--------MRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLMVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSED 1248
            VG +G+  +   + +K I +W  QE +L    S     SK + +H+G +A T + E A+VD IN  RK         VM KLL   P   GGMP++ +PE+   F+ +FN+WY RF KR+ FSIRR+ SVGQK P+G+EG AWA + KLR +L + A E                               +F  L NMDQTP+Q EMP +TT+E TG K A I+TGG+ EK R+T+VLAV  DG+ V P II+KG PF+  T +                         G+PA G+S GVQ+ SW    + + W+   +        M RP + S   QRP +LVLDDF+CH++E F   L   A T+++ + GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W+ ++  T+ +CFK+CGLTL LDGSED
Sbjct:   77 VGGKGSYPIRLQVPRKRIIEWLKQEGQLREKVSANPKLSKAKQVHSGGKASTVDAEQALVDYINEQRKLHRGCGNREVMNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRASVGQKLPKGYEGMAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGK-EKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSAPAVADARSG-KLKPPERGVVSTWCKEAWEFVTSETVNTCFKICGLTLALDGSED 532          
BLAST of mRNA_P-littoralis_Contig678.34.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 1.910e-89
Identity = 185/462 (40.04%), Postives = 251/462 (54.33%), Query Frame = 1
Query:   25 KLEVLKFSRLTCGDGHPVGRRGAGKVFGIDKKLIRDWESQEAELVA-FSKKENASKQRSLHTGREADTKEVEVAIVDEINTLRKNGAAVTRDLVMAKLLSEMPTFSGGMPSHDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGAKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLMVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWI----RDNYGRSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTL 1227
            KL+V+ F+R+ C DG P G  GA KV  + ++ I +W   E  L A  S     SK + +H   +A   ++E A+V+ IN  RK+         M KLL   P   GG+ +  +PE+      +F +WY RF KR++FSIRR+TSVGQK P+G EG AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +TT+E TGAK A I TGG+ EK R+T+ LAV  DG+KV  RII+KG PFV                           +  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+++ + GGL P+ QPLDR +NK+ KR +R  YT+      RD   ++G K+  P RG VATW K  W +I+   +++CFK+CGLTL
Sbjct:   61 KLKVVAFTRVVCEDGKPGGNSGAAKVLDVPRRRIVEWVRDEESLRAKVSANPKLSKAKQIHARGKASRADIEEALVEFINDQRKHHVGCGSMAAMNKLLELKPDALGGLAAKPKPEEALALNSKFKSWYQRFCKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGK-EKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAHTAKAARDP--KTG-KLVPPGRGAVATWCKNAWASITPEIVKTCFKICGLTL 517          
BLAST of mRNA_P-littoralis_Contig678.34.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 1.420e-87
Identity = 163/372 (43.82%), Postives = 222/372 (59.68%), Query Frame = 1
Query:  304 MAKLLSEMPTFSGGMPSHDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGAKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLMVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSED 1248
            M KLL   P   GGMP++ +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G EG AWA + KLR +L + A E                               +F  L NMDQTP+Q E+P +TT+EKTGAK A I+TGG+ EK R+T+VLAV  DG+KV PRII+KG PF   T +                         G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+++ + G LTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W++ +  T+++CF +CGLTL LDGSED
Sbjct:    1 MNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGDEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSG-KLKPPERGVVSTWCKEAWESSTPETVKTCFMICGLTLALDGSED 370          
BLAST of mRNA_P-littoralis_Contig678.34.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 6.830e-86
Identity = 182/460 (39.57%), Postives = 242/460 (52.61%), Query Frame = 1
Query:  124 IRDWESQEAELVAFSKKENASKQRSLHTGREADTKEVEVAIVDEINTLRKNGAAVTRDLVMAKLLSEMPTFSGGMPSHDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGAKSACITTGGET-------------------------EKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLMVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWI----RDNYGRSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSED 1248
            +RD ES  A + A  K    SK + +H G +A T ++E A+V+ IN  RK+        VM KLL   P   GG+ +  +PE+   F+ +F +WY RF KR++FSIRR+TSVG + P+G EG AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +TT+EKTGAK A I TG                            EK R+T+ LAV  DG KV  RII+KG PFV                           +  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+++ + GGLTP+ QPLDR +NK+ KR +R  YT+      RD   ++G K+  P RG VATW K  W +I+  T+++CFK+CGLTL LDGSED
Sbjct:   31 VRDEESLRANVSANPK---LSKAKQIHAGGKASTADIEEALVEFINDQRKHHVGCGSMAVMNKLLELKPDTLGGLTAKPKPEEALAFKSKFKSWYQRFRKRNKFSIRRRTSVGIRLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDP--KTG-KLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSED 483          
BLAST of mRNA_P-littoralis_Contig678.34.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 1.230e-82
Identity = 162/401 (40.40%), Postives = 220/401 (54.86%), Query Frame = 1
Query:  304 MAKLLSEMPTFSGGMPSHDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGAKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLMVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRS-----------------------------CFKVCGLTLNLDGSED 1248
            M KLL   P   GGM ++ +P +   F+ + N+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L   A E                               +F  L NMDQTP+Q EMP +TT+EKTGAK A I+TGG+ EK R+T+VLAV  DG+KV PRII+KG PF+                               +PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E +   L   A T+++++ GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W++I+  T+ S                             CFK+CGLTL LDGSED
Sbjct:    1 MNKLLELKPNALGGMSANAKPTEALAFKVKINSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSG-KLKPPERGVVSTWCKEAWESITPETVSSVRKERFALGDVRAWSGENPACSVXETVKTCFKICGLTLALDGSED 399          
BLAST of mRNA_P-littoralis_Contig678.34.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 4.570e-77
Identity = 189/517 (36.56%), Postives = 245/517 (47.39%), Query Frame = 1
Query:   25 KLEVLKFSRLTCGDGHPVGRRGAGKVFGIDKKLIRDWESQEAELVAFSK-KENASKQRSLHTGREADTKEVEVAIVDEINTLRKNGAAVTRDLVMAKLLSEMPTFSGGMPSHDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGAKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLMVMLGGGLTPVCQPLDRNINKEFKRGVRARY----------------------------------------------------TSWIRDNYGRSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSED 1248
            KL   +F+R+ C DG PVG  GA KV G+D++ +  W  +EA +    K K   SK +S+H G    T EVE  + D IN                    E    S G        ++  F+ +F  WY+ F +RH FSIRR+TSVGQK P G+EG A+A + KLR++L E A E                               +F  L NMDQTP+Q EMP +TT+EK G K A I+TGG+ EK R+T  LAV  DG KV  RII+KG PF+                             FGYP  G+   VQ+ SWCD  +   W+++ +  RP  GS  + QR S+LVLDDFRCHR E F K L     T ++++ GGLTP+ QPLDR +NKE KR +R                                                        S I D   ++G K+  P RGLV+T  KE W  I+  T++ CFKVCGLTL LDGSED
Sbjct:    4 KLTAAEFTRVLCEDGQPVGNSGAAKVLGVDRRRVITWIGEEATMKKLVKEKPKLSKAKSIHVGMAPTTAEVEQDLEDCIN--------------------EQLAASAG--------EILAFRTKFKNWYHCFRERHGFSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGK-EKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIK-QRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQYMASAIADP--KTG-KLQPPGRGLVSTRYKESWAAITPETVKMCFKVCGLTLALDGSED 487          
BLAST of mRNA_P-littoralis_Contig678.34.1 vs. uniprot
Match: A0A6H5JN68_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN68_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 1.730e-76
Identity = 180/510 (35.29%), Postives = 249/510 (48.82%), Query Frame = 1
Query:   25 KLEVLKFSRLTCG-DGHPVGRRGAGKVFGIDKKLIRDWESQEAEL-VAFSKKENASKQRSLHTGREADTKEVEVAIVDEINTLRKNGAAVTRDLVMAKLLSEMPTFSGGMPSHDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAIFALLYNMDQTPIQAEMP---PDTTVEKTGAKSACITTGGETEKLRYTV------------------------VLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSW-----CDGTQS-----------------------------------------DEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLMVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSED 1248
            KL    ++R  C  DG PVG  GA K+  +  K I +W  QE +L    S     SK + + +G +A T + E A+VD IN  RK         V +KLL   P   GGMP++ +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AW  + KLR +L + A E     +Y   Q P   E P    D T E+  +  A  +    T   R +                         VLAV  DG+KV PRII+KG PF+  T +                         G+PA G+S GVQ+ SW     C+G ++                                         + W +     RP + S   QRP +LVLDDFRCH++E F   L     T+++ + GGLTP+  PLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W++I+  T+++CFK+CGLTL LDGSED
Sbjct:   41 KLNAAVYTREICPYDGQPVGNNGAAKLLQVPGKRIIEWLKQEEQLREKVSANPKLSKAKQVQSGGKASTVDTEQALVDYINEQRKQHRGCGNREVTSKLLELKPDALGGMPANTKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWTTVMKLRETLVKRAGE-----IYARRQPPAPDESPIKGEDLTSEQLVSVEAEDSRNSATWIRRQSSTRCRWRPLWRRPVRRMLASAQEERVLAVMADGKKVSPRIIFKGMPFIPPTVSGKGESILPRTNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGARASWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERGVVSTWCKEAWESTPETXRPNNGSIVQQRPCILVLDDFRCHKDEGFIAALNRDPNTIVIFIPGGLTPLFHPLDRMLNKQMKRLLRGKYTAYSASAVADARSG-KLKPPERGVVSTWCKEAWESITPETVKTCFKICGLTLALDGSED 544          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig678.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHT8_9PHAE1.780e-9640.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM5_9PHAE7.460e-9540.80DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ8_9PHAE7.560e-9440.75DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5JTG5_9PHAE3.460e-9340.61DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE1.910e-8940.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6L9_9PHAE1.420e-8743.82DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE6.830e-8639.57DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE1.230e-8240.40DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K583_9PHAE4.570e-7736.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JN68_9PHAE1.730e-7635.29DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig678contigP-littoralis_Contig678:113851..115791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7668.SPU_015022-tr
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size1248
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons4
Evalue8.02e-50
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,38I47@33154|Opisthokonta,3BMCH@33208|Metazoa,3CYY1@33213|Bilateria
Descriptionpogo transposable element with KRAB domain
Cds size1248
COG categoryBD
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791409.0225112-CDS-P-littoralis_Contig678:113850..1143281680791409.0225112-CDS-P-littoralis_Contig678:113850..114328Pylaiella littoralis U1_48CDSP-littoralis_Contig678 113851..114328 -
1680791409.0343695-CDS-P-littoralis_Contig678:114397..1145011680791409.0343695-CDS-P-littoralis_Contig678:114397..114501Pylaiella littoralis U1_48CDSP-littoralis_Contig678 114398..114501 -
1680791409.0442522-CDS-P-littoralis_Contig678:115020..1151371680791409.0442522-CDS-P-littoralis_Contig678:115020..115137Pylaiella littoralis U1_48CDSP-littoralis_Contig678 115021..115137 -
1680791409.05372-CDS-P-littoralis_Contig678:115242..1157911680791409.05372-CDS-P-littoralis_Contig678:115242..115791Pylaiella littoralis U1_48CDSP-littoralis_Contig678 115243..115791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig678.34.1prot_P-littoralis_Contig678.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig678 113851..115791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig678.34.1

>prot_P-littoralis_Contig678.34.1 ID=prot_P-littoralis_Contig678.34.1|Name=mRNA_P-littoralis_Contig678.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=416bp
RCAYENAQKLEVLKFSRLTCGDGHPVGRRGAGKVFGIDKKLIRDWESQEA
ELVAFSKKENASKQRSLHTGREADTKEVEVAIVDEINTLRKNGAAVTRDL
VMAKLLSEMPTFSGGMPSHDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRK
TSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAIFALLYNMDQTPIQAEM
PPDTTVEKTGAKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNP
FVGGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSRDQR
PSVLVLDDFRCHREERFQKKLMDLAKTLMVMLGGGLTPVCQPLDRNINKE
FKRGVRARYTSWIRDNYGRSGQKVTAPSRGLVATWVKEVWDNISERTIRS
CFKVCGLTLNLDGSED
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mRNA from alignment at P-littoralis_Contig678:113851..115791-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig678.34.1 ID=mRNA_P-littoralis_Contig678.34.1|Name=mRNA_P-littoralis_Contig678.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1941bp|location=Sequence derived from alignment at P-littoralis_Contig678:113851..115791- (Pylaiella littoralis U1_48)
CGGTGCGCATACGAGAACGCGCAGAAGCTCGAGGTGCTGAAGTTCAGCCG GCTTACGTGTGGTGATGGGCACCCAGTCGGAAGGCGTGGTGCGGGGAAGG TGTTCGGCATCGACAAGAAGCTGATCCGGGACTGGGAGAGCCAGGAGGCA GAGCTTGTGGCGTTTTCGAAGAAGGAGAACGCAAGCAAGCAGCGGTCGTT GCACACTGGACGCGAGGCTGACACGAAGGAGGTGGAGGTTGCCATAGTGG ACGAGATCAACACGCTCAGGAAAAACGGTGCTGCTGTGACCCGGGACCTC GTCATGGCCAAGCTTCTCTCCGAGATGCCAACCTTTTCAGGGGGCATGCC GTCCCACGACGAGCCGGAGAAGATGGAAAAATTTCAGAAGCGTTTCAACG CCTGGTACTACAGGTTCCTCAAGAGGCACCGGTTCTCGATCCGACGCAAA ACGAGCGTGGGGCAGAAGAAGCCGGAAGGATGGGAGGGCAAGGCGTGGGC ATTCATCCAGAAGCTTCGCTCAAGCCTGCGTGAGCACGCGCAGGAAGCCG TTCTCTTGGAGAGGGCAGCCCAGGCAGCGAAGGACGGAGGGACCGTTGAG ATCGAGATGGACGTCATCGCAACTGCGGAGGAACTTCTGGCTGTTCAGGG CAAGATCTTCGCCCTTCTGTACAACATGGACCAGACCCCGATCCAGGCTG AGATGCCGCCGGACACCACGGTGGAGAAGACTGGTGCGAAGAGCGCTTGC ATCACGACAGGAGGTGAGACGGTGTACTAAAGGTATTTCGATTGTTGAAA TTCAGTTCAAACCAACATGGTGGAGATTTTCTGACGATGGAACAAGCGGG GAATTACAAATTTGCCGACGGCGGAAAACGGGGAATTATAATATTTTGCA TTGCTTCTGCCGTCACGTGCACGCTTTCGTTCTTCTATTGCCTGCAAGTA CGGTACGTACTGCTGTATCGCCTGTCCCTTCGAACTACCGGTACACAGCG ATAAAATTATTCATATGGTATTCCGCTGAAGTATTTTTTTTAATATACAT ATGTTTTGGGGGGCAATATATATTTTACCGTATACACCGGAGTTTGTTTT TATTTTACTTTTTATGTTGTGGTAGGCATTACACCCCAGGAGTTAAAGGT GTGTGTTTGTTTTTTATTATTATTTATTTTTTGTTTGTTGTGGCAGGCAA TACGATTAATAATTGTACTGCTTTGCGGAGTATTTTCTTTTAACACAATT TCTTTTGTTTGCATACGCCCCAATTTTCGCACCAGGCAAGGAGAAGCTGC GATACACCGTGGTGCTAGCTGTCCGGGGTGATGGACAGAAGGTGCGGCCG CGCATCATCTACAAGGGGAACCCTTTTGTCGGGGGTACCAACAAGTCAGG CTCAGCCAAGAAGCCTGGCAAGAACAGCCTGTCGTACGAGCACCTCCCAG ACAAGCGGACGAGCTTCGGCTACCCGGCTGGCGGCATCAGCCTCGGGGTG CAGAAGTCGTCGTGGTGCGACGGCACCCAGTCCGACGAGTGGGTAACCCA GGACTTCATGCGCCGCCCAGGGTCTACCTCCAGAGATCAGCGTCCCAGCG TTCTCGTGCTCGACGACTTCAGGTGCCACCGGGAAGAGAGGTTCCAAAAG AAGCTAATGGACCTGGCCAAGACGCTGATGGTGATGCTTGGTGGAGGGCT GACCCCGGTGTGCCAGCCGCTCGACCGGAACATCAACAAGGAGTTCAAGC GAGGTGTTCGGGCCAGGTACACCAGCTGGATCCGGGACAACTACGGGCGC TCGGGGCAGAAGGTGACCGCGCCGAGCAGGGGGCTGGTCGCGACGTGGGT AAAGGAGGTGTGGGACAACATCTCGGAGCGGACCATCCGCTCGTGCTTCA AGGTCTGCGGTCTCACCCTCAACCTCGACGGAAGCGAGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig678:113851..115791-

>mRNA_P-littoralis_Contig678.34.1 ID=mRNA_P-littoralis_Contig678.34.1|Name=mRNA_P-littoralis_Contig678.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1248bp|location=Sequence derived from alignment at P-littoralis_Contig678:113851..115791- (Pylaiella littoralis U1_48)
CGGTGCGCATACGAGAACGCGCAGAAGCTCGAGGTGCTGAAGTTCAGCCG
GCTTACGTGTGGTGATGGGCACCCAGTCGGAAGGCGTGGTGCGGGGAAGG
TGTTCGGCATCGACAAGAAGCTGATCCGGGACTGGGAGAGCCAGGAGGCA
GAGCTTGTGGCGTTTTCGAAGAAGGAGAACGCAAGCAAGCAGCGGTCGTT
GCACACTGGACGCGAGGCTGACACGAAGGAGGTGGAGGTTGCCATAGTGG
ACGAGATCAACACGCTCAGGAAAAACGGTGCTGCTGTGACCCGGGACCTC
GTCATGGCCAAGCTTCTCTCCGAGATGCCAACCTTTTCAGGGGGCATGCC
GTCCCACGACGAGCCGGAGAAGATGGAAAAATTTCAGAAGCGTTTCAACG
CCTGGTACTACAGGTTCCTCAAGAGGCACCGGTTCTCGATCCGACGCAAA
ACGAGCGTGGGGCAGAAGAAGCCGGAAGGATGGGAGGGCAAGGCGTGGGC
ATTCATCCAGAAGCTTCGCTCAAGCCTGCGTGAGCACGCGCAGGAAGCCA
TCTTCGCCCTTCTGTACAACATGGACCAGACCCCGATCCAGGCTGAGATG
CCGCCGGACACCACGGTGGAGAAGACTGGTGCGAAGAGCGCTTGCATCAC
GACAGGAGGTGAGACGGAGAAGCTGCGATACACCGTGGTGCTAGCTGTCC
GGGGTGATGGACAGAAGGTGCGGCCGCGCATCATCTACAAGGGGAACCCT
TTTGTCGGGGGTACCAACAACTTCGGCTACCCGGCTGGCGGCATCAGCCT
CGGGGTGCAGAAGTCGTCGTGGTGCGACGGCACCCAGTCCGACGAGTGGG
TAACCCAGGACTTCATGCGCCGCCCAGGGTCTACCTCCAGAGATCAGCGT
CCCAGCGTTCTCGTGCTCGACGACTTCAGGTGCCACCGGGAAGAGAGGTT
CCAAAAGAAGCTAATGGACCTGGCCAAGACGCTGATGGTGATGCTTGGTG
GAGGGCTGACCCCGGTGTGCCAGCCGCTCGACCGGAACATCAACAAGGAG
TTCAAGCGAGGTGTTCGGGCCAGGTACACCAGCTGGATCCGGGACAACTA
CGGGCGCTCGGGGCAGAAGGTGACCGCGCCGAGCAGGGGGCTGGTCGCGA
CGTGGGTAAAGGAGGTGTGGGACAACATCTCGGAGCGGACCATCCGCTCG
TGCTTCAAGGTCTGCGGTCTCACCCTCAACCTCGACGGAAGCGAGGAC
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