mRNA_P-littoralis_Contig678.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig678.5.1
Unique NamemRNA_P-littoralis_Contig678.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig678.5.1 vs. uniprot
Match: A0A6H5JBA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA3_9PHAE)

HSP 1 Score: 285 bits (730), Expect = 5.160e-85
Identity = 156/362 (43.09%), Postives = 207/362 (57.18%), Query Frame = 3
Query:   36 DNGFGEGEAQALHHAWAVSQSEQST----------VKANKRVEIMSVDTDVWRAALLVYAVYPATQNARVVVRSQRGVGSSKECQHIDVLKLFDEIQAVTHWPQEFTPLQRCLPVVAAYILCGTNFTPTLHSVTSLSMFDSYYQAAKNAGNFDFIRGLGKARTEGGVNIGLDLDRKECVKFVGL*YFDKNRKLFEDPTPGRQVSG------GGGEPDATKPWIEHIVRWTYRAHYSSARWQKVAPDYDVIELHVQRMEWVANYWLS-------SYSSLSDYPVKVPEYHNSGYVRDGEKGHDDEVALMHMRRSPAVTLKPGEGIHVRCSCKLKEGKRVCVGCIRTKEGDGTCSDLCNCAGKC 1052
            DNG GEGE QALHH + V   +QS           V+   RVE++SVDTDVW AALL YA +P T+N RVVVR Q G+        +DVL+LF+ +  +T WP  FTPLQ+CLPV+AAY+LCGT+FTPT    TS  MF SY++  KN  N  F++ LG+   + G   G+ L+R+E +KFV L YF K +  F  P PG QV          G  D TK W++ I   T  A Y   + ++ AP+YDV++L V RMEW+  YWLS             +YP+ VPE++N GY++D E    D    M +RR P VT+ PG    V+C C    G+  C  C+  ++G   CS+LC C   C
Sbjct:  464 DNGLGEGELQALHHVYQVCLQQQSREGSREGQEAGVREPVRVEVVSVDTDVWVAALLAYAAHPWTRNVRVVVRKQSGLYDQAAVTCVDVLELFNALTRLTSWPSAFTPLQKCLPVIAAYMLCGTDFTPTFFGFTSFFMFQSYFEYVKNPENHRFLKALGEHAVKDGAVAGVALEREELIKFVALAYFKKYQASFLYP-PGHQVEPIVDPKKRNGAVDETKAWVDAIHVRTSEAAYGQGKVREAAPNYDVLDLCVLRMEWLVEYWLSIVPVSAAGSEPSENYPIAVPEWNNKGYLKDPEV---DGCCKMLLRREPKVTIWPGGVETVKCRCSDVPGRGQCTSCVCKQKGS-ICSELCKCKRAC 820          
BLAST of mRNA_P-littoralis_Contig678.5.1 vs. uniprot
Match: A0A6H5KQE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE5_9PHAE)

HSP 1 Score: 285 bits (730), Expect = 4.350e-83
Identity = 156/362 (43.09%), Postives = 207/362 (57.18%), Query Frame = 3
Query:   36 DNGFGEGEAQALHHAWAVSQSEQST----------VKANKRVEIMSVDTDVWRAALLVYAVYPATQNARVVVRSQRGVGSSKECQHIDVLKLFDEIQAVTHWPQEFTPLQRCLPVVAAYILCGTNFTPTLHSVTSLSMFDSYYQAAKNAGNFDFIRGLGKARTEGGVNIGLDLDRKECVKFVGL*YFDKNRKLFEDPTPGRQVSG------GGGEPDATKPWIEHIVRWTYRAHYSSARWQKVAPDYDVIELHVQRMEWVANYWLS-------SYSSLSDYPVKVPEYHNSGYVRDGEKGHDDEVALMHMRRSPAVTLKPGEGIHVRCSCKLKEGKRVCVGCIRTKEGDGTCSDLCNCAGKC 1052
            DNG GEGE QALHH + V   +QS           V+   RVE++SVDTDVW AALL YA +P T+N RVVVR Q G+        +DVL+LF+ +  +T WP  FTPLQ+CLPV+AAY+LCGT+FTPT    TS  MF SY++  KN  N  F++ LG+   + G   G+ L+R+E +KFV L YF K +  F  P PG QV          G  D TK W++ I   T  A Y   + ++ AP+YDV++L V RMEW+  YWLS             +YP+ VPE++N GY++D E    D    M +RR P VT+ PG    V+C C    G+  C  C+  ++G   CS+LC C   C
Sbjct:  958 DNGLGEGELQALHHVYQVCLQQQSREGSREGQEAGVREPVRVEVVSVDTDVWVAALLAYAAHPWTRNVRVVVRKQSGLYDQAAVTCVDVLELFNALTRLTSWPSAFTPLQKCLPVIAAYMLCGTDFTPTFFGFTSFFMFQSYFEYVKNPENHRFLKALGEHAVKDGAVAGVALEREELIKFVALAYFKKYQASFLYP-PGHQVEPIVDPKKRNGAVDETKAWVDAIHVRTSEAAYGQGKVREAAPNYDVLDLCVLRMEWLVEYWLSIVPVSAAGSEPSENYPIAVPEWNNKGYLKDPEV---DGCCKMLLRREPKVTIWPGGVETVKCRCSDVPGRGQCTSCVCKQKGS-ICSELCKCKRAC 1314          
BLAST of mRNA_P-littoralis_Contig678.5.1 vs. uniprot
Match: A0A6H5KUZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ3_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 2.130e-63
Identity = 142/370 (38.38%), Postives = 186/370 (50.27%), Query Frame = 3
Query:   21 VTGVMDNGFGEGEAQALHHAWAV-------------SQSEQSTVKANK----RVEIMSVDTDVWRAALLVYAVYPATQNARVVVRSQRGVGSSKECQHIDVLKLFDEIQAVTHWPQEFTPLQRCLPVVAAYILCGTNFTPTLHSVTSLSMFDSYYQAAKNAGNFDFIRGLGKARTEGGVNIGLDLDRKECVKFVGL*YFDKNRKLFEDPTPGRQVSGGGGEPDATKPWIEHIVRWTYRAHYSSARWQKVAPDYDVIELHVQRMEWVANYWLS---SYSSLSD----YPVKVPEYHNSGYVRDGEKGHDDEVALMHMRRSPAVTLKPGEGIHVRCSCKLKEGKRV--CVGCIRTKEGDGTCSDLCNCAGKC 1052
            + G   NG GEGE QALHHA+ V             S SE +     +    RVE++S+  DVW AALL YA+YP  +  RVVVR Q G+        IDVL+LF+ +  + +WP  FT LQRCLPV+A+Y+L GT+FTPTL  ++S  MF SY++ AKNA N  F++ LG                                +L ED         G GE D T+ W+E I   T    Y +    K AP+YD  EL V RM W+  YWLS   S S  SD    YP++V ++    Y+   EK   +   +M MRR P VT+ PG    V+C C   + KR   C  C+   +G G CS+LC C  KC
Sbjct:  235 IIGDEGNGIGEGELQALHHAYLVGRTAGPLTGEGGGSSSENNQEGQGETPPVRVEVVSIHRDVWVAALLAYALYPHIRIVRVVVRQQSGLNDEAVVNCIDVLELFEALAKMENWPHSFTGLQRCLPVIASYMLNGTDFTPTLSGLSSFFMFQSYFELAKNAENHQFVKALGT-------------------------------ELIED---------GEGEVDDTRRWVEAIQERTAEKWYGAGNLSKAAPNYDAAELCVLRMSWLVEYWLSVVPSDSPGSDASARYPIQVSKWDGMWYI---EKTEVEGGCMMLMRRFPKVTIWPGGFETVKCMCSSAKRKRGGHCTSCVCITKGFGHCSELCKCKLKC 561          
BLAST of mRNA_P-littoralis_Contig678.5.1 vs. uniprot
Match: A0A6H5KUA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA8_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.010e-34
Identity = 61/118 (51.69%), Postives = 87/118 (73.73%), Query Frame = 3
Query:  129 VEIMSVDTDVWRAALLVYAVYPATQNARVVVRSQRGVGSSKECQHIDVLKLFDEIQAVTHWPQEFTPLQRCLPVVAAYILCGTNFTPTLHSVTSLSMFDSYYQAAKNAGNFDFIRGLG 482
            VE+ SVDTDVW AALL YAV+P+T++ R++VR Q G+  +     ID+LKLF ++ A+ +WP  FT LQ  LP+++AY+L GT++TPTL  +T+ SMF +YY A K+AGN +F+  LG
Sbjct:   10 VEVFSVDTDVWIAALLSYAVHPSTRDVRIIVRQQSGMAVNTNVHCIDLLKLFQDLTAMRNWPSSFTKLQSVLPIISAYVLNGTDYTPTLSGLTASSMFQAYYDALKDAGNHNFVLPLG 127          
BLAST of mRNA_P-littoralis_Contig678.5.1 vs. uniprot
Match: A0A6H5KRV8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV8_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 3.060e-33
Identity = 76/170 (44.71%), Postives = 105/170 (61.76%), Query Frame = 3
Query:   39 NGFGEGEAQALHHAWAVSQSEQS----------------TVKANKRVEIMSVDTDVWRAALLVYAVYPATQNARVVVRSQRGVGSSKECQHIDVLKLFDEIQAVTHWPQEFTPLQRCLPVVAAYILCGTNFTPTLHSVTSLSMFDSYYQAAKNAGNFDFIRGLGKARTEG 500
            NG GEGE QALHHA+   ++ +                 T +    VE++SVDTDVW AALL YAV+P+T++ R++VR Q GV  +     IDVLKL  ++ A+  WP  FT LQR L +V+A++L GT+FTP+L   T+ SMF +Y  A K+AGN +F+  LG  + EG
Sbjct:  855 NGIGEGELQALHHAYMTGKNNKESRGQGGEVREGGVVVPTSEDPVTVEVVSVDTDVWMAALLAYAVHPSTRDVRIIVRQQSGVTGNTYVNCIDVLKLLQDLSAMRFWPSSFTNLQRVLSIVSAFVLNGTDFTPSLSGFTASSMFQAY-NALKDAGNHNFVLPLGSEQREG 1023          
BLAST of mRNA_P-littoralis_Contig678.5.1 vs. uniprot
Match: A0A6H5KC27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC27_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.280e-31
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 3
Query:  129 VEIMSVDTDVWRAALLVYAVYPATQNARVVVRSQRGVGSSKECQHIDVLKLFDEIQAVTHWPQEFTPLQRCLPVVAAYILCGTNFTPTLHSVTSLSMFDSYYQAAKN 449
            VE+ SVDTDVW AALL YAV+P+T++ R++VR Q GV  +     IDVLKL  ++ A+ +WP  FT LQR LP++ AY+L GT+FTPTL+ +T+ SMF +YY A K+
Sbjct:   32 VEVFSVDTDVWIAALLAYAVHPSTRDVRIIVRQQSGVTGNTHAHGIDVLKLLQDLTAMRNWPSSFTNLQRVLPIIFAYVLNGTDFTPTLNGLTTSSMFQAYYDALKD 138          
BLAST of mRNA_P-littoralis_Contig678.5.1 vs. uniprot
Match: A0A6H5JPJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ8_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.440e-29
Identity = 56/112 (50.00%), Postives = 81/112 (72.32%), Query Frame = 3
Query:  165 AALLVYAVYPATQNARVVVRSQRGVGSSKECQHIDVLKLFDEIQAVTHWPQEFTPLQRCLPVVAAYILCGTNFTPTLHSVTSLSMFDSYYQAAKNAGNFDFIRGLGKARTEG 500
            AALL YAV+P+T++ R++VR Q GV  +     IDVLKLF ++ A+ +WP  FT LQR LP+V+A++L GT+FTPTL  +T+ S+F ++Y A K+AGN +F+  LG  + EG
Sbjct:    2 AALLAYAVHPSTRDVRIIVRQQSGVTGNTYVNCIDVLKLFQDLSAMRNWPSSFTNLQRVLPIVSAFVLNGTDFTPTLSGLTASSVFQAFYDALKDAGNHNFVLPLGSEQREG 113          
BLAST of mRNA_P-littoralis_Contig678.5.1 vs. uniprot
Match: A0A6H5JVH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH3_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.230e-26
Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = 3
Query:  168 ALLVYAVYPATQNARVVVRSQRGVGSSKECQHIDVLKLFDEIQAVTHWPQEFTPLQRCLPVVAAYILCGTNFTPTLHSVTSLSMFDSYYQAAKNAGNFDFIRGLG 482
            ALL YAV+P+T++  ++VR Q GV  +     IDVLKLF ++ A+  WP  FT LQR LP++ AY+L GT+FTPTL  +T+ SM  +YY A K+AGN +F+  LG
Sbjct:   34 ALLAYAVHPSTRDVHIIVRQQSGVTGNTNVHCIDVLKLFQDLTAMRDWPTSFTNLQRVLPIIYAYVLNGTDFTPTLSGLTASSMSQAYYDALKDAGNHNFVLPLG 138          
BLAST of mRNA_P-littoralis_Contig678.5.1 vs. uniprot
Match: A0A6H5LLB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLB8_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.610e-23
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 3
Query:  165 AALLVYAVYPATQNARVVVRSQRGVGSSKECQHIDVLKLFDEIQAVTHWPQEFTPLQRCLPVVAAYILCGTNFTPTLHSVTSLSMFDSY 431
            AALL YAV+P+T++ R++VR Q GV  +     IDVLKLF ++ A+ +WP  FT LQR LP+V+A++L GT+FTPTL  +T+ SMF +Y
Sbjct:    2 AALLAYAVHPSTRDVRIIVRQQSGVTGNTYVNCIDVLKLFQDLSAMRNWPSSFTNLQRVLPIVSAFVLDGTDFTPTLSGLTASSMFQAY 90          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig678.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JBA3_9PHAE5.160e-8543.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQE5_9PHAE4.350e-8343.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUZ3_9PHAE2.130e-6338.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUA8_9PHAE1.010e-3451.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRV8_9PHAE3.060e-3344.71Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KC27_9PHAE1.280e-3154.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPJ8_9PHAE1.440e-2950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVH3_9PHAE2.230e-2650.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LLB8_9PHAE4.610e-2352.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig678contigP-littoralis_Contig678:4899..6012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1114
Hectar predicted targeting categoryother localisation
Exons1
Cds size528
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791408.5155358-UTR-P-littoralis_Contig678:4898..54521680791408.5155358-UTR-P-littoralis_Contig678:4898..5452Pylaiella littoralis U1_48UTRP-littoralis_Contig678 4899..5452 -
1680791408.5425696-UTR-P-littoralis_Contig678:5980..60121680791408.5425696-UTR-P-littoralis_Contig678:5980..6012Pylaiella littoralis U1_48UTRP-littoralis_Contig678 5981..6012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791408.528998-CDS-P-littoralis_Contig678:5452..59801680791408.528998-CDS-P-littoralis_Contig678:5452..5980Pylaiella littoralis U1_48CDSP-littoralis_Contig678 5453..5980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig678.5.1prot_P-littoralis_Contig678.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig678 5453..5980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig678.5.1

>prot_P-littoralis_Contig678.5.1 ID=prot_P-littoralis_Contig678.5.1|Name=mRNA_P-littoralis_Contig678.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=176bp
MDNGFGEGEAQALHHAWAVSQSEQSTVKANKRVEIMSVDTDVWRAALLVY
AVYPATQNARVVVRSQRGVGSSKECQHIDVLKLFDEIQAVTHWPQEFTPL
QRCLPVVAAYILCGTNFTPTLHSVTSLSMFDSYYQAAKNAGNFDFIRGLG
KARTEGGVNIGLDLDRKECVKFVGL*
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mRNA from alignment at P-littoralis_Contig678:4899..6012-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig678.5.1 ID=mRNA_P-littoralis_Contig678.5.1|Name=mRNA_P-littoralis_Contig678.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1114bp|location=Sequence derived from alignment at P-littoralis_Contig678:4899..6012- (Pylaiella littoralis U1_48)
CAGATGGCAGCATTACAGGCGTCACGGGGGTCATGGACAACGGGTTTGGG GAGGGTGAAGCACAAGCGCTCCACCACGCTTGGGCGGTTTCCCAAAGCGA ACAAAGTACCGTCAAAGCCAATAAGCGAGTGGAAATTATGTCTGTGGATA CGGATGTATGGAGAGCCGCGCTTCTCGTCTACGCGGTATACCCGGCGACT CAGAATGCGCGCGTCGTGGTGCGCTCGCAGCGAGGGGTCGGCAGCTCAAA AGAATGCCAGCACATTGACGTGCTGAAACTCTTCGACGAAATCCAGGCCG TGACCCACTGGCCGCAGGAGTTCACCCCGCTTCAACGGTGCTTGCCGGTG GTTGCAGCCTACATTCTCTGCGGTACAAACTTCACGCCCACGCTACACTC GGTGACCTCCCTAAGCATGTTTGACTCGTACTACCAAGCTGCGAAGAACG CCGGCAATTTTGATTTCATTCGGGGTCTTGGTAAAGCAAGAACAGAGGGA GGCGTTAACATCGGCTTGGACTTAGATCGCAAAGAGTGTGTAAAGTTTGT GGGACTTTGATACTTCGACAAAAATCGTAAACTTTTCGAAGACCCGACAC CTGGCCGGCAGGTTAGTGGGGGGGGGGGTGAGCCCGATGCCACAAAGCCG TGGATAGAGCACATAGTTAGGTGGACGTATCGTGCGCATTATTCATCCGC GCGTTGGCAGAAGGTTGCGCCAGACTATGACGTCATTGAGCTTCACGTCC AACGGATGGAATGGGTTGCCAATTACTGGCTGTCATCATACAGTTCGTTG AGTGATTATCCTGTAAAAGTACCAGAGTACCATAATTCGGGGTACGTCAG GGATGGGGAGAAAGGGCACGACGACGAGGTAGCCTTGATGCACATGCGAC GTTCACCTGCGGTGACTCTGAAGCCCGGCGAGGGGATTCACGTAAGGTGC AGTTGTAAGTTAAAGGAGGGAAAACGTGTGTGTGTGGGTTGCATACGCAC AAAGGAGGGCGATGGAACTTGCTCCGACCTATGTAACTGCGCTGGTAAAT GCGGGAACGGGAGCGCTCCTGGTGGAAGCGACCCATTGTCTAGCGCAAAC GTTGGGCAAGGTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig678:4899..6012-

>mRNA_P-littoralis_Contig678.5.1 ID=mRNA_P-littoralis_Contig678.5.1|Name=mRNA_P-littoralis_Contig678.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=528bp|location=Sequence derived from alignment at P-littoralis_Contig678:4899..6012- (Pylaiella littoralis U1_48)
ATGGACAACGGGTTTGGGGAGGGTGAAGCACAAGCGCTCCACCACGCTTG
GGCGGTTTCCCAAAGCGAACAAAGTACCGTCAAAGCCAATAAGCGAGTGG
AAATTATGTCTGTGGATACGGATGTATGGAGAGCCGCGCTTCTCGTCTAC
GCGGTATACCCGGCGACTCAGAATGCGCGCGTCGTGGTGCGCTCGCAGCG
AGGGGTCGGCAGCTCAAAAGAATGCCAGCACATTGACGTGCTGAAACTCT
TCGACGAAATCCAGGCCGTGACCCACTGGCCGCAGGAGTTCACCCCGCTT
CAACGGTGCTTGCCGGTGGTTGCAGCCTACATTCTCTGCGGTACAAACTT
CACGCCCACGCTACACTCGGTGACCTCCCTAAGCATGTTTGACTCGTACT
ACCAAGCTGCGAAGAACGCCGGCAATTTTGATTTCATTCGGGGTCTTGGT
AAAGCAAGAACAGAGGGAGGCGTTAACATCGGCTTGGACTTAGATCGCAA
AGAGTGTGTAAAGTTTGTGGGACTTTGA
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