mRNA_P-littoralis_Contig678.5.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig678.5.1 vs. uniprot
Match: A0A6H5JBA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA3_9PHAE) HSP 1 Score: 285 bits (730), Expect = 5.160e-85 Identity = 156/362 (43.09%), Postives = 207/362 (57.18%), Query Frame = 3
Query: 36 DNGFGEGEAQALHHAWAVSQSEQST----------VKANKRVEIMSVDTDVWRAALLVYAVYPATQNARVVVRSQRGVGSSKECQHIDVLKLFDEIQAVTHWPQEFTPLQRCLPVVAAYILCGTNFTPTLHSVTSLSMFDSYYQAAKNAGNFDFIRGLGKARTEGGVNIGLDLDRKECVKFVGL*YFDKNRKLFEDPTPGRQVSG------GGGEPDATKPWIEHIVRWTYRAHYSSARWQKVAPDYDVIELHVQRMEWVANYWLS-------SYSSLSDYPVKVPEYHNSGYVRDGEKGHDDEVALMHMRRSPAVTLKPGEGIHVRCSCKLKEGKRVCVGCIRTKEGDGTCSDLCNCAGKC 1052
DNG GEGE QALHH + V +QS V+ RVE++SVDTDVW AALL YA +P T+N RVVVR Q G+ +DVL+LF+ + +T WP FTPLQ+CLPV+AAY+LCGT+FTPT TS MF SY++ KN N F++ LG+ + G G+ L+R+E +KFV L YF K + F P PG QV G D TK W++ I T A Y + ++ AP+YDV++L V RMEW+ YWLS +YP+ VPE++N GY++D E D M +RR P VT+ PG V+C C G+ C C+ ++G CS+LC C C
Sbjct: 464 DNGLGEGELQALHHVYQVCLQQQSREGSREGQEAGVREPVRVEVVSVDTDVWVAALLAYAAHPWTRNVRVVVRKQSGLYDQAAVTCVDVLELFNALTRLTSWPSAFTPLQKCLPVIAAYMLCGTDFTPTFFGFTSFFMFQSYFEYVKNPENHRFLKALGEHAVKDGAVAGVALEREELIKFVALAYFKKYQASFLYP-PGHQVEPIVDPKKRNGAVDETKAWVDAIHVRTSEAAYGQGKVREAAPNYDVLDLCVLRMEWLVEYWLSIVPVSAAGSEPSENYPIAVPEWNNKGYLKDPEV---DGCCKMLLRREPKVTIWPGGVETVKCRCSDVPGRGQCTSCVCKQKGS-ICSELCKCKRAC 820
BLAST of mRNA_P-littoralis_Contig678.5.1 vs. uniprot
Match: A0A6H5KQE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE5_9PHAE) HSP 1 Score: 285 bits (730), Expect = 4.350e-83 Identity = 156/362 (43.09%), Postives = 207/362 (57.18%), Query Frame = 3
Query: 36 DNGFGEGEAQALHHAWAVSQSEQST----------VKANKRVEIMSVDTDVWRAALLVYAVYPATQNARVVVRSQRGVGSSKECQHIDVLKLFDEIQAVTHWPQEFTPLQRCLPVVAAYILCGTNFTPTLHSVTSLSMFDSYYQAAKNAGNFDFIRGLGKARTEGGVNIGLDLDRKECVKFVGL*YFDKNRKLFEDPTPGRQVSG------GGGEPDATKPWIEHIVRWTYRAHYSSARWQKVAPDYDVIELHVQRMEWVANYWLS-------SYSSLSDYPVKVPEYHNSGYVRDGEKGHDDEVALMHMRRSPAVTLKPGEGIHVRCSCKLKEGKRVCVGCIRTKEGDGTCSDLCNCAGKC 1052
DNG GEGE QALHH + V +QS V+ RVE++SVDTDVW AALL YA +P T+N RVVVR Q G+ +DVL+LF+ + +T WP FTPLQ+CLPV+AAY+LCGT+FTPT TS MF SY++ KN N F++ LG+ + G G+ L+R+E +KFV L YF K + F P PG QV G D TK W++ I T A Y + ++ AP+YDV++L V RMEW+ YWLS +YP+ VPE++N GY++D E D M +RR P VT+ PG V+C C G+ C C+ ++G CS+LC C C
Sbjct: 958 DNGLGEGELQALHHVYQVCLQQQSREGSREGQEAGVREPVRVEVVSVDTDVWVAALLAYAAHPWTRNVRVVVRKQSGLYDQAAVTCVDVLELFNALTRLTSWPSAFTPLQKCLPVIAAYMLCGTDFTPTFFGFTSFFMFQSYFEYVKNPENHRFLKALGEHAVKDGAVAGVALEREELIKFVALAYFKKYQASFLYP-PGHQVEPIVDPKKRNGAVDETKAWVDAIHVRTSEAAYGQGKVREAAPNYDVLDLCVLRMEWLVEYWLSIVPVSAAGSEPSENYPIAVPEWNNKGYLKDPEV---DGCCKMLLRREPKVTIWPGGVETVKCRCSDVPGRGQCTSCVCKQKGS-ICSELCKCKRAC 1314
BLAST of mRNA_P-littoralis_Contig678.5.1 vs. uniprot
Match: A0A6H5KUZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ3_9PHAE) HSP 1 Score: 223 bits (568), Expect = 2.130e-63 Identity = 142/370 (38.38%), Postives = 186/370 (50.27%), Query Frame = 3
Query: 21 VTGVMDNGFGEGEAQALHHAWAV-------------SQSEQSTVKANK----RVEIMSVDTDVWRAALLVYAVYPATQNARVVVRSQRGVGSSKECQHIDVLKLFDEIQAVTHWPQEFTPLQRCLPVVAAYILCGTNFTPTLHSVTSLSMFDSYYQAAKNAGNFDFIRGLGKARTEGGVNIGLDLDRKECVKFVGL*YFDKNRKLFEDPTPGRQVSGGGGEPDATKPWIEHIVRWTYRAHYSSARWQKVAPDYDVIELHVQRMEWVANYWLS---SYSSLSD----YPVKVPEYHNSGYVRDGEKGHDDEVALMHMRRSPAVTLKPGEGIHVRCSCKLKEGKRV--CVGCIRTKEGDGTCSDLCNCAGKC 1052
+ G NG GEGE QALHHA+ V S SE + + RVE++S+ DVW AALL YA+YP + RVVVR Q G+ IDVL+LF+ + + +WP FT LQRCLPV+A+Y+L GT+FTPTL ++S MF SY++ AKNA N F++ LG +L ED G GE D T+ W+E I T Y + K AP+YD EL V RM W+ YWLS S S SD YP++V ++ Y+ EK + +M MRR P VT+ PG V+C C + KR C C+ +G G CS+LC C KC
Sbjct: 235 IIGDEGNGIGEGELQALHHAYLVGRTAGPLTGEGGGSSSENNQEGQGETPPVRVEVVSIHRDVWVAALLAYALYPHIRIVRVVVRQQSGLNDEAVVNCIDVLELFEALAKMENWPHSFTGLQRCLPVIASYMLNGTDFTPTLSGLSSFFMFQSYFELAKNAENHQFVKALGT-------------------------------ELIED---------GEGEVDDTRRWVEAIQERTAEKWYGAGNLSKAAPNYDAAELCVLRMSWLVEYWLSVVPSDSPGSDASARYPIQVSKWDGMWYI---EKTEVEGGCMMLMRRFPKVTIWPGGFETVKCMCSSAKRKRGGHCTSCVCITKGFGHCSELCKCKLKC 561
BLAST of mRNA_P-littoralis_Contig678.5.1 vs. uniprot
Match: A0A6H5KUA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA8_9PHAE) HSP 1 Score: 133 bits (335), Expect = 1.010e-34 Identity = 61/118 (51.69%), Postives = 87/118 (73.73%), Query Frame = 3
Query: 129 VEIMSVDTDVWRAALLVYAVYPATQNARVVVRSQRGVGSSKECQHIDVLKLFDEIQAVTHWPQEFTPLQRCLPVVAAYILCGTNFTPTLHSVTSLSMFDSYYQAAKNAGNFDFIRGLG 482
VE+ SVDTDVW AALL YAV+P+T++ R++VR Q G+ + ID+LKLF ++ A+ +WP FT LQ LP+++AY+L GT++TPTL +T+ SMF +YY A K+AGN +F+ LG
Sbjct: 10 VEVFSVDTDVWIAALLSYAVHPSTRDVRIIVRQQSGMAVNTNVHCIDLLKLFQDLTAMRNWPSSFTKLQSVLPIISAYVLNGTDYTPTLSGLTASSMFQAYYDALKDAGNHNFVLPLG 127
BLAST of mRNA_P-littoralis_Contig678.5.1 vs. uniprot
Match: A0A6H5KRV8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV8_9PHAE) HSP 1 Score: 141 bits (356), Expect = 3.060e-33 Identity = 76/170 (44.71%), Postives = 105/170 (61.76%), Query Frame = 3
Query: 39 NGFGEGEAQALHHAWAVSQSEQS----------------TVKANKRVEIMSVDTDVWRAALLVYAVYPATQNARVVVRSQRGVGSSKECQHIDVLKLFDEIQAVTHWPQEFTPLQRCLPVVAAYILCGTNFTPTLHSVTSLSMFDSYYQAAKNAGNFDFIRGLGKARTEG 500
NG GEGE QALHHA+ ++ + T + VE++SVDTDVW AALL YAV+P+T++ R++VR Q GV + IDVLKL ++ A+ WP FT LQR L +V+A++L GT+FTP+L T+ SMF +Y A K+AGN +F+ LG + EG
Sbjct: 855 NGIGEGELQALHHAYMTGKNNKESRGQGGEVREGGVVVPTSEDPVTVEVVSVDTDVWMAALLAYAVHPSTRDVRIIVRQQSGVTGNTYVNCIDVLKLLQDLSAMRFWPSSFTNLQRVLSIVSAFVLNGTDFTPSLSGFTASSMFQAY-NALKDAGNHNFVLPLGSEQREG 1023
BLAST of mRNA_P-littoralis_Contig678.5.1 vs. uniprot
Match: A0A6H5KC27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC27_9PHAE) HSP 1 Score: 126 bits (316), Expect = 1.280e-31 Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 3
Query: 129 VEIMSVDTDVWRAALLVYAVYPATQNARVVVRSQRGVGSSKECQHIDVLKLFDEIQAVTHWPQEFTPLQRCLPVVAAYILCGTNFTPTLHSVTSLSMFDSYYQAAKN 449
VE+ SVDTDVW AALL YAV+P+T++ R++VR Q GV + IDVLKL ++ A+ +WP FT LQR LP++ AY+L GT+FTPTL+ +T+ SMF +YY A K+
Sbjct: 32 VEVFSVDTDVWIAALLAYAVHPSTRDVRIIVRQQSGVTGNTHAHGIDVLKLLQDLTAMRNWPSSFTNLQRVLPIIFAYVLNGTDFTPTLNGLTTSSMFQAYYDALKD 138
BLAST of mRNA_P-littoralis_Contig678.5.1 vs. uniprot
Match: A0A6H5JPJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ8_9PHAE) HSP 1 Score: 119 bits (299), Expect = 1.440e-29 Identity = 56/112 (50.00%), Postives = 81/112 (72.32%), Query Frame = 3
Query: 165 AALLVYAVYPATQNARVVVRSQRGVGSSKECQHIDVLKLFDEIQAVTHWPQEFTPLQRCLPVVAAYILCGTNFTPTLHSVTSLSMFDSYYQAAKNAGNFDFIRGLGKARTEG 500
AALL YAV+P+T++ R++VR Q GV + IDVLKLF ++ A+ +WP FT LQR LP+V+A++L GT+FTPTL +T+ S+F ++Y A K+AGN +F+ LG + EG
Sbjct: 2 AALLAYAVHPSTRDVRIIVRQQSGVTGNTYVNCIDVLKLFQDLSAMRNWPSSFTNLQRVLPIVSAFVLNGTDFTPTLSGLTASSVFQAFYDALKDAGNHNFVLPLGSEQREG 113
BLAST of mRNA_P-littoralis_Contig678.5.1 vs. uniprot
Match: A0A6H5JVH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH3_9PHAE) HSP 1 Score: 112 bits (279), Expect = 2.230e-26 Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = 3
Query: 168 ALLVYAVYPATQNARVVVRSQRGVGSSKECQHIDVLKLFDEIQAVTHWPQEFTPLQRCLPVVAAYILCGTNFTPTLHSVTSLSMFDSYYQAAKNAGNFDFIRGLG 482
ALL YAV+P+T++ ++VR Q GV + IDVLKLF ++ A+ WP FT LQR LP++ AY+L GT+FTPTL +T+ SM +YY A K+AGN +F+ LG
Sbjct: 34 ALLAYAVHPSTRDVHIIVRQQSGVTGNTNVHCIDVLKLFQDLTAMRDWPTSFTNLQRVLPIIYAYVLNGTDFTPTLSGLTASSMSQAYYDALKDAGNHNFVLPLG 138
BLAST of mRNA_P-littoralis_Contig678.5.1 vs. uniprot
Match: A0A6H5LLB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLB8_9PHAE) HSP 1 Score: 101 bits (252), Expect = 4.610e-23 Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 3
Query: 165 AALLVYAVYPATQNARVVVRSQRGVGSSKECQHIDVLKLFDEIQAVTHWPQEFTPLQRCLPVVAAYILCGTNFTPTLHSVTSLSMFDSY 431
AALL YAV+P+T++ R++VR Q GV + IDVLKLF ++ A+ +WP FT LQR LP+V+A++L GT+FTPTL +T+ SMF +Y
Sbjct: 2 AALLAYAVHPSTRDVRIIVRQQSGVTGNTYVNCIDVLKLFQDLSAMRNWPSSFTNLQRVLPIVSAFVLDGTDFTPTLSGLTASSMFQAY 90 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig678.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig678.5.1 >prot_P-littoralis_Contig678.5.1 ID=prot_P-littoralis_Contig678.5.1|Name=mRNA_P-littoralis_Contig678.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=176bp MDNGFGEGEAQALHHAWAVSQSEQSTVKANKRVEIMSVDTDVWRAALLVYback to top mRNA from alignment at P-littoralis_Contig678:4899..6012- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig678.5.1 ID=mRNA_P-littoralis_Contig678.5.1|Name=mRNA_P-littoralis_Contig678.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1114bp|location=Sequence derived from alignment at P-littoralis_Contig678:4899..6012- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig678:4899..6012- >mRNA_P-littoralis_Contig678.5.1 ID=mRNA_P-littoralis_Contig678.5.1|Name=mRNA_P-littoralis_Contig678.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=528bp|location=Sequence derived from alignment at P-littoralis_Contig678:4899..6012- (Pylaiella littoralis U1_48)back to top |