prot_P-littoralis_Contig672.9.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig672.9.1
Unique Nameprot_P-littoralis_Contig672.9.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length213
Homology
BLAST of mRNA_P-littoralis_Contig672.9.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.140e-17
Identity = 54/159 (33.96%), Postives = 82/159 (51.57%), Query Frame = 0
Query:   19 SSDKRTCKWLHDRVLQRVQQDWCDVTWFALLADSLGINIAVWEPAGVNRDLQIYQATDNMKGLFLYDKKDRMDEEGPQWLHLLFHTMDKPFTARAGVKPGEGPMMTHNHFSWMSLSGEAGERFKRAIGSGQQQAGG----PEALRDA--RSGLSTAIGG 171
            +++ +T +W  D   Q  ++ W DVTW + LA   G+NI VWEP+  +  +Q Y    N  G+FL++K+D+MDEEG  W+HLL+     P+ AR             NHF  + L  +A   F   + S + Q G     P A+  A   +G S+ +GG
Sbjct:   79 AAEDKTVRWFCDLAWQSAEK-WVDVTWMSFLASEYGVNIMVWEPSAKHGTVQAYLGN-NTAGMFLFEKEDKMDEEGDHWVHLLYREHANPWLAR-------NQNHNLNHFDRLQLGHDAAASFVDVVASAKLQLGTVTLMPSAIYTAGGEAGGSSLVGG 228          
BLAST of mRNA_P-littoralis_Contig672.9.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.140e-17
Identity = 53/159 (33.33%), Postives = 82/159 (51.57%), Query Frame = 0
Query:   19 SSDKRTCKWLHDRVLQRVQQDWCDVTWFALLADSLGINIAVWEPAGVNRDLQIYQATDNMKGLFLYDKKDRMDEEGPQWLHLLFHTMDKPFTARAGVKPGEGPMMTHNHFSWMSLSGEAGERFKRAIGSGQQQAGG----PEALRDA--RSGLSTAIGG 171
            +++ +T +W  D   Q  ++ W D+TW + LA   G+NI VWEP+  +  +Q Y    N  G+FL++K+D+MDEEG  W+HLL+     P+ AR             NHF  + L  +A   F   + S + Q G     P A+  A   +G S+ +GG
Sbjct:  168 AAEDKTVRWFCDLARQSAEK-WVDITWMSFLASEYGVNIMVWEPSAKHGTVQAYSGN-NTAGMFLFEKEDKMDEEGDHWVHLLYREHANPWLAR-------NQNHNLNHFDRLQLGHDAVASFVEVVASAKLQLGTVTLMPSAIYTAGGEAGGSSMVGG 317          
BLAST of mRNA_P-littoralis_Contig672.9.1 vs. uniprot
Match: A0A6H5KFV5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFV5_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.870e-15
Identity = 44/121 (36.36%), Postives = 62/121 (51.24%), Query Frame = 0
Query:   27 WLHDRVLQRVQQDWCDVTWFALLADSLGINIAVWEPAGVNRDLQIYQATDNMKGLFLYDKKDRMDEEGPQWLHLLFHTMDKPFTARAGVKPGEGPMMTHNHFSWMSLSGEAGERFKRAIGS 147
            WL D      ++ W DVTW + LA   G+NI VWEP+  +  +Q Y    N  G+FL++K+D+MDEEG  W+HLL+     P+ AR             NHF  + L  +A   F   + S
Sbjct:  315 WLCDLAWHSAEK-WIDVTWMSFLASEYGVNIMVWEPSAKHGTVQAYSGN-NTAGMFLFEKEDKMDEEGDHWVHLLYREHANPWLAR-------NQNHNLNHFDRLQLGHDAVASFVEVVAS 426          
BLAST of mRNA_P-littoralis_Contig672.9.1 vs. uniprot
Match: A0A6H5K2B4_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B4_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 6.960e-12
Identity = 44/138 (31.88%), Postives = 67/138 (48.55%), Query Frame = 0
Query:   19 SSDKRTCKWLHDRVLQRVQQDWCDVTWFALLADSLGINIA---VWEPAGVNRDLQIYQATDNMKGLFLYDKKDRMDEEGPQWLHLLFHTMDKPFTARAGVKPGEGPMMTHNHFSWMSLSGEAGERFKRAIGSGQQQAG 153
            +++++T +W  D   Q V+  W D+TW + LA   G+NI     W        +Q Y    N  G+FL++K+D+MDEEG  W+HLL+     P+ AR             NHF  + L  +A   F   + S + Q G
Sbjct:    2 AAEEKTVRWFCDLAWQSVK--WVDITWMSFLASEYGVNITGCPSWSR------IQTYSGN-NTAGMFLFEKEDKMDEEGDHWVHLLYREHANPWLAR-------NQNHNLNHFDRLQLGHDAVASFVEVVASAKLQLG 123          
BLAST of mRNA_P-littoralis_Contig672.9.1 vs. uniprot
Match: A0A6H5KNV0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV0_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.700e-10
Identity = 44/131 (33.59%), Postives = 68/131 (51.91%), Query Frame = 0
Query:   47 ALLADSLGINIAVWEPAGVNRDLQIYQATDNMKGLFLYDKKDRMDEEGPQWLHLLFHTMDKPFTARAGVKPGEGPMMTHNHFSWMSLSGEAGERFKRAIGSGQQQAGG----PEALRDA--RSGLSTAIGG 171
            +LLA   G+NI +WEP+  +  +Q Y + +N  G+ L++K+D+MDEEG  W+HLL+     P+ AR             NHF  + L  +A   F   + S + Q G     P A+  A   +G S+ +GG
Sbjct:    2 SLLASEYGVNIILWEPSAKHGTVQAY-SENNTAGMLLFEKEDKMDEEGDHWVHLLYREHANPWLAR-------NQNHNLNHFDRLQLGHDAVASFVEVVASAKLQLGTVTLMPSAIYTAGGEAGGSSMVGG 124          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig672.9.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JJP9_9PHAE1.140e-1733.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW40_9PHAE1.140e-1733.33HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5KFV5_9PHAE1.870e-1536.36Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K2B4_9PHAE6.960e-1231.88DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A6H5KNV0_9PHAE3.700e-1033.59DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..213
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..194

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig672contigP-littoralis_Contig672:46012..46650 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig672.9.1mRNA_P-littoralis_Contig672.9.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig672 46011..46650 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig672.9.1 ID=prot_P-littoralis_Contig672.9.1|Name=mRNA_P-littoralis_Contig672.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=213bp
MRLIERVDGHGNYMDEPQSSDKRTCKWLHDRVLQRVQQDWCDVTWFALLA
DSLGINIAVWEPAGVNRDLQIYQATDNMKGLFLYDKKDRMDEEGPQWLHL
LFHTMDKPFTARAGVKPGEGPMMTHNHFSWMSLSGEAGERFKRAIGSGQQ
QAGGPEALRDARSGLSTAIGGRGIKRKNTQPEQSSKTNDGGTSKKPVLVM
SPRTAGAKDKGKR
back to top