mRNA_P-littoralis_Contig672.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig672.9.1
Unique NamemRNA_P-littoralis_Contig672.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig672.9.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.140e-17
Identity = 54/159 (33.96%), Postives = 82/159 (51.57%), Query Frame = 2 
Query:   56 SSDKRTCKWLHDRVLQRVQQDWCDVTWFALLADSLGINIAVWEPAGVNRDLQIYQATDNMKGLFLYDKKDRMDEEGPQWLHLLFHTMDKPFTARAGVKPGEGPMMTHNHFSWMSLSGEAGERFKRAIGSGQQQAGG----PEALRDA--RSGLSTAIGG 514
            +++ +T +W  D   Q  ++ W DVTW + LA   G+NI VWEP+  +  +Q Y    N  G+FL++K+D+MDEEG  W+HLL+     P+ AR             NHF  + L  +A   F   + S + Q G     P A+  A   +G S+ +GG
Sbjct:   79 AAEDKTVRWFCDLAWQSAEK-WVDVTWMSFLASEYGVNIMVWEPSAKHGTVQAYLGN-NTAGMFLFEKEDKMDEEGDHWVHLLYREHANPWLAR-------NQNHNLNHFDRLQLGHDAAASFVDVVASAKLQLGTVTLMPSAIYTAGGEAGGSSLVGG 228
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BLAST of mRNA_P-littoralis_Contig672.9.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.140e-17
Identity = 53/159 (33.33%), Postives = 82/159 (51.57%), Query Frame = 2 
Query:   56 SSDKRTCKWLHDRVLQRVQQDWCDVTWFALLADSLGINIAVWEPAGVNRDLQIYQATDNMKGLFLYDKKDRMDEEGPQWLHLLFHTMDKPFTARAGVKPGEGPMMTHNHFSWMSLSGEAGERFKRAIGSGQQQAGG----PEALRDA--RSGLSTAIGG 514
            +++ +T +W  D   Q  ++ W D+TW + LA   G+NI VWEP+  +  +Q Y    N  G+FL++K+D+MDEEG  W+HLL+     P+ AR             NHF  + L  +A   F   + S + Q G     P A+  A   +G S+ +GG
Sbjct:  168 AAEDKTVRWFCDLARQSAEK-WVDITWMSFLASEYGVNIMVWEPSAKHGTVQAYSGN-NTAGMFLFEKEDKMDEEGDHWVHLLYREHANPWLAR-------NQNHNLNHFDRLQLGHDAVASFVEVVASAKLQLGTVTLMPSAIYTAGGEAGGSSMVGG 317
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BLAST of mRNA_P-littoralis_Contig672.9.1 vs. uniprot
Match: A0A6H5KFV5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFV5_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.870e-15
Identity = 44/121 (36.36%), Postives = 62/121 (51.24%), Query Frame = 2 
Query:   80 WLHDRVLQRVQQDWCDVTWFALLADSLGINIAVWEPAGVNRDLQIYQATDNMKGLFLYDKKDRMDEEGPQWLHLLFHTMDKPFTARAGVKPGEGPMMTHNHFSWMSLSGEAGERFKRAIGS 442
            WL D      ++ W DVTW + LA   G+NI VWEP+  +  +Q Y    N  G+FL++K+D+MDEEG  W+HLL+     P+ AR             NHF  + L  +A   F   + S
Sbjct:  315 WLCDLAWHSAEK-WIDVTWMSFLASEYGVNIMVWEPSAKHGTVQAYSGN-NTAGMFLFEKEDKMDEEGDHWVHLLYREHANPWLAR-------NQNHNLNHFDRLQLGHDAVASFVEVVAS 426
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BLAST of mRNA_P-littoralis_Contig672.9.1 vs. uniprot
Match: A0A6H5K2B4_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B4_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 6.960e-12
Identity = 44/138 (31.88%), Postives = 67/138 (48.55%), Query Frame = 2 
Query:   56 SSDKRTCKWLHDRVLQRVQQDWCDVTWFALLADSLGINIA---VWEPAGVNRDLQIYQATDNMKGLFLYDKKDRMDEEGPQWLHLLFHTMDKPFTARAGVKPGEGPMMTHNHFSWMSLSGEAGERFKRAIGSGQQQAG 460
            +++++T +W  D   Q V+  W D+TW + LA   G+NI     W        +Q Y    N  G+FL++K+D+MDEEG  W+HLL+     P+ AR             NHF  + L  +A   F   + S + Q G
Sbjct:    2 AAEEKTVRWFCDLAWQSVK--WVDITWMSFLASEYGVNITGCPSWSR------IQTYSGN-NTAGMFLFEKEDKMDEEGDHWVHLLYREHANPWLAR-------NQNHNLNHFDRLQLGHDAVASFVEVVASAKLQLG 123
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BLAST of mRNA_P-littoralis_Contig672.9.1 vs. uniprot
Match: A0A6H5KNV0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV0_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.700e-10
Identity = 44/131 (33.59%), Postives = 68/131 (51.91%), Query Frame = 2 
Query:  140 ALLADSLGINIAVWEPAGVNRDLQIYQATDNMKGLFLYDKKDRMDEEGPQWLHLLFHTMDKPFTARAGVKPGEGPMMTHNHFSWMSLSGEAGERFKRAIGSGQQQAGG----PEALRDA--RSGLSTAIGG 514
            +LLA   G+NI +WEP+  +  +Q Y + +N  G+ L++K+D+MDEEG  W+HLL+     P+ AR             NHF  + L  +A   F   + S + Q G     P A+  A   +G S+ +GG
Sbjct:    2 SLLASEYGVNIILWEPSAKHGTVQAY-SENNTAGMLLFEKEDKMDEEGDHWVHLLYREHANPWLAR-------NQNHNLNHFDRLQLGHDAVASFVEVVASAKLQLGTVTLMPSAIYTAGGEAGGSSMVGG 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig672.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JJP9_9PHAE1.140e-1733.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW40_9PHAE1.140e-1733.33HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5KFV5_9PHAE1.870e-1536.36Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K2B4_9PHAE6.960e-1231.88DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A6H5KNV0_9PHAE3.700e-1033.59DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig672contigP-littoralis_Contig672:46011..46650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size641
Hectar predicted targeting categoryother localisation
Exons1
Cds size639
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791401.1345127-UTR-P-littoralis_Contig672:46010..460111680791401.1345127-UTR-P-littoralis_Contig672:46010..46011Pylaiella littoralis U1_48UTRP-littoralis_Contig672 46011..46011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791401.1481767-CDS-P-littoralis_Contig672:46011..466501680791401.1481767-CDS-P-littoralis_Contig672:46011..46650Pylaiella littoralis U1_48CDSP-littoralis_Contig672 46012..46650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig672.9.1prot_P-littoralis_Contig672.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig672 46012..46650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig672.9.1

>prot_P-littoralis_Contig672.9.1 ID=prot_P-littoralis_Contig672.9.1|Name=mRNA_P-littoralis_Contig672.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=213bp
MRLIERVDGHGNYMDEPQSSDKRTCKWLHDRVLQRVQQDWCDVTWFALLA
DSLGINIAVWEPAGVNRDLQIYQATDNMKGLFLYDKKDRMDEEGPQWLHL
LFHTMDKPFTARAGVKPGEGPMMTHNHFSWMSLSGEAGERFKRAIGSGQQ
QAGGPEALRDARSGLSTAIGGRGIKRKNTQPEQSSKTNDGGTSKKPVLVM
SPRTAGAKDKGKR
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mRNA from alignment at P-littoralis_Contig672:46011..46650+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig672.9.1 ID=mRNA_P-littoralis_Contig672.9.1|Name=mRNA_P-littoralis_Contig672.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=640bp|location=Sequence derived from alignment at P-littoralis_Contig672:46011..46650+ (Pylaiella littoralis U1_48)
GATGCGCTTGATCGAGAGGGTAGATGGGCACGGAAACTACATGGACGAAC
CTCAATCTAGCGACAAGAGGACGTGCAAGTGGCTGCATGATCGAGTACTG
CAGCGAGTCCAGCAAGACTGGTGTGATGTTACCTGGTTTGCTCTACTGGC
CGATTCCCTCGGAATAAACATCGCCGTGTGGGAGCCAGCAGGCGTCAATC
GTGATCTGCAAATTTACCAGGCTACAGACAACATGAAGGGTTTGTTCTTG
TACGACAAAAAAGACCGCATGGATGAGGAGGGGCCCCAATGGCTGCATTT
GTTGTTCCACACGATGGATAAGCCCTTTACCGCTCGGGCCGGGGTCAAAC
CGGGGGAGGGACCCATGATGACACACAATCACTTCTCCTGGATGTCGTTA
TCAGGGGAAGCAGGAGAGAGATTCAAACGCGCGATCGGCTCAGGGCAACA
ACAGGCTGGAGGTCCCGAGGCATTGCGGGATGCTCGCTCGGGGCTGAGCA
CGGCAATAGGGGGGAGGGGTATCAAGAGGAAAAACACCCAGCCAGAGCAG
TCGAGCAAAACAAATGACGGCGGCACATCCAAGAAACCGGTACTTGTGAT
GTCACCACGGACTGCCGGGGCTAAAGACAAGGGGAAGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig672:46011..46650+

>mRNA_P-littoralis_Contig672.9.1 ID=mRNA_P-littoralis_Contig672.9.1|Name=mRNA_P-littoralis_Contig672.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=639bp|location=Sequence derived from alignment at P-littoralis_Contig672:46011..46650+ (Pylaiella littoralis U1_48)
ATGCGCTTGATCGAGAGGGTAGATGGGCACGGAAACTACATGGACGAACC
TCAATCTAGCGACAAGAGGACGTGCAAGTGGCTGCATGATCGAGTACTGC
AGCGAGTCCAGCAAGACTGGTGTGATGTTACCTGGTTTGCTCTACTGGCC
GATTCCCTCGGAATAAACATCGCCGTGTGGGAGCCAGCAGGCGTCAATCG
TGATCTGCAAATTTACCAGGCTACAGACAACATGAAGGGTTTGTTCTTGT
ACGACAAAAAAGACCGCATGGATGAGGAGGGGCCCCAATGGCTGCATTTG
TTGTTCCACACGATGGATAAGCCCTTTACCGCTCGGGCCGGGGTCAAACC
GGGGGAGGGACCCATGATGACACACAATCACTTCTCCTGGATGTCGTTAT
CAGGGGAAGCAGGAGAGAGATTCAAACGCGCGATCGGCTCAGGGCAACAA
CAGGCTGGAGGTCCCGAGGCATTGCGGGATGCTCGCTCGGGGCTGAGCAC
GGCAATAGGGGGGAGGGGTATCAAGAGGAAAAACACCCAGCCAGAGCAGT
CGAGCAAAACAAATGACGGCGGCACATCCAAGAAACCGGTACTTGTGATG
TCACCACGGACTGCCGGGGCTAAAGACAAGGGGAAGAGG
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