mRNA_P-littoralis_Contig117.29.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig117.29.2
Unique NamemRNA_P-littoralis_Contig117.29.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig117.29.2 vs. uniprot
Match: A0A6H5KKI6_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKI6_9PHAE)

HSP 1 Score: 437 bits (1123), Expect = 3.070e-151
Identity = 235/336 (69.94%), Postives = 266/336 (79.17%), Query Frame = 3
Query:   21 APIMWQSVQVFAL----LCWHAEAFVI-PCATRATQTASRFVSGTRIFSFRQQRRTPINRGSGRTAVAPLIMSLKEEQEESGESRYLSLTNLTREQFLLGGWAALLGSAYLGANQDQRSYRARKRDLFRSIAGDGKDGKAEFRDILEVGVGGNPKVGGFSNLGYYRRGQNIVGVDPALSGEPSEALERATSRAQQLGLTLRGMGGEAEELPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVEHVHAPEEGLSILGLRQQQDLLDPLQQQLADGCHLTRETGRLIRDSTGGPSSSSRLFSRIERIEELRVKSMWPVSEQVFGVVVK 1013
            APIM  SV + A     LC+  +A+   P   +A   A R+ S T    +R++             VAPL MS KEEQE + E++YLS+T L+REQ L GG AA  GSAYLGA+QDQ SYRARKRDLFRSIAG G++   EFRDILEVGVGGNPKVGGF+NL +YRRGQ I+GVDP LSGEPS+ALERAT +AQ+LGLTLRG+GG AEELPFE+GSFDAVVSTLVFCSVRDP AALREVSRVLRPGGKFLFVEHVHAP+EGLSILGLRQQQ+LLDPLQQ LADGCHLTRET +LIRDS G   S +RLFSRIE IE +R+KSMWPVSEQVFGVVVK
Sbjct:    4 APIMCLSVNIVAAFTWWLCFEVDAYAFCPTTAKAQARAGRYTSCTSSSLYRRREEY----------VAPLDMSSKEEQERASENKYLSVTKLSREQVLFGGLAACFGSAYLGASQDQTSYRARKRDLFRSIAGGGEN---EFRDILEVGVGGNPKVGGFNNLEFYRRGQRIIGVDPTLSGEPSQALERATEKAQKLGLTLRGVGGIAEELPFETGSFDAVVSTLVFCSVRDPAAALREVSRVLRPGGKFLFVEHVHAPDEGLSILGLRQQQELLDPLQQLLADGCHLTRETDQLIRDSAGESPSRNRLFSRIETIESVRIKSMWPVSEQVFGVVVK 326          
BLAST of mRNA_P-littoralis_Contig117.29.2 vs. uniprot
Match: D7FYW0_ECTSI (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW0_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 2.280e-82
Identity = 130/152 (85.53%), Postives = 139/152 (91.45%), Query Frame = 3
Query:  558 ALERATSRAQQLGLTLRGMGGEAEELPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVEHVHAPEEGLSILGLRQQQDLLDPLQQQLADGCHLTRETGRLIRDSTGGPSSSSRLFSRIERIEELRVKSMWPVSEQVFGVVVK 1013
            ALERAT +AQ+LGLTLRG+GG  EELPFES SFDAVVSTLVFCSVRDP AALREVSRVLRPGGKFLFVEHVHAP+EGLSILGLRQQQ+LLDPLQQ LADGCHLTRETG+LIRDS G   S +RLFSRIE IE +R+KSMWPVSEQVFGVVVK
Sbjct:   83 ALERATEKAQKLGLTLRGVGGIVEELPFESSSFDAVVSTLVFCSVRDPAAALREVSRVLRPGGKFLFVEHVHAPDEGLSILGLRQQQELLDPLQQLLADGCHLTRETGQLIRDSAGESPSRNRLFSRIETIESVRIKSMWPVSEQVFGVVVK 234          
BLAST of mRNA_P-littoralis_Contig117.29.2 vs. uniprot
Match: A0A835Z8C0_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8C0_9STRA)

HSP 1 Score: 193 bits (491), Expect = 2.560e-56
Identity = 114/270 (42.22%), Postives = 149/270 (55.19%), Query Frame = 3
Query:  303 GGWAALLGSAYLGANQDQRSYRARKRDLFRSIAGDGKDGKAEFRDILEV---------------GVGGNPKVGGFSNLGYYRRGQNIVGVDPALSGEPSEALERATS-------------RAQQLGLTLRGMGGEAEELPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVEHVHAPEEGLSILGLRQQQDLLDPLQQQLADGCHLTRETGRLIRDST-----GGPSSSSRLFSRIERIEELRVKSMWPVSEQVFGVVVK 1013
            G   A  G  +   ++D   Y ARKR LF++++ D  +G     + + V               G+GGNP +GGF+NL YY RG  + GVDPAL    +  + RA               +A +LG+ L  +GG AE+LP  + S DAVVSTLVFCSV+DP  A+ EV+RVLRPGGK+LF+EHV AP +G  +   R    LLDPLQ  +A GCHLTR T  LI   T          + +LFSR+E +E   V S WP S Q+ GV VK
Sbjct:   14 GSTLAAWGLVFAATSRDDVEYDARKRRLFQALSADQIEGGLHVLEAIAVKDNRMQLSITHNARIGIGGNPTLGGFTNLEYYPRGTVLSGVDPALEDGAAGGIVRAAQCASAALAVTDAAVKAARLGIDLTAVGGRAEQLPIATASCDAVVSTLVFCSVQDPAQAMSEVARVLRPGGKWLFMEHVAAPRDGPLLASQR----LLDPLQIAIASGCHLTRHTEELILSRTQXXXXXXXXRAPQLFSRVEGLERFTVGSRWPASTQIMGVAVK 279          
BLAST of mRNA_P-littoralis_Contig117.29.2 vs. uniprot
Match: A0A4D9CZT3_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZT3_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.520e-46
Identity = 110/268 (41.04%), Postives = 151/268 (56.34%), Query Frame = 3
Query:  246 SGESRYLSLTNLTREQFLLGGWAALLGSAYLGANQ---DQRSYRARKRDLFRSIAGDGKDGKAEFRDI-----LEVGVGGNPKVGGFSNLGYYRRGQNIVGVDPALSGEPSEALERATSRAQQLGLTLRGMGGEAEELPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVEHVHAPEEGLSILGLRQQQDLLDPLQQQLADGCHLTRETGRLIRDSTGGPSSSSR----LFSRIERIEELRVKSMWPVSEQVFGVVVK 1013
            SGE+    ++ L+R +  L    AL GS  L  N+   ++R+Y    ++LF  ++  G       +D+     LE+GVG         N+ YY  G  +VG+DP L+    +A+  A S+A+   +    + G AE LPF   SFDAVVSTLVFCSV+D   AL EV+RVLRPGGKFLFVEH+ A E+   +L   + Q ++DPLQ  L +GCHL R T  L+   T G     R    LF R+ER+  L + + WPVS QV GV+VK
Sbjct:   48 SGEA----VSRLSRRESFLPALIAL-GSGALLLNKSLNEERAYEGLHQELFALLSASGSGAGEAGKDVRALKVLEIGVGQGV------NVKYYPSGCEVVGLDPNLN---QDAMSVAQSKAKARNIQWSALEGRAESLPFPDASFDAVVSTLVFCSVQDQARALTEVARVLRPGGKFLFVEHIWAGEKEHPVL--HRVQGIMDPLQAFLVNGCHLVRHTDDLLLGETKGGDGRDREGVMLFDRVERLNYLEMDTQWPVSVQVAGVLVK 299          
BLAST of mRNA_P-littoralis_Contig117.29.2 vs. uniprot
Match: W7TRI3_9STRA (S-adenosylmethionine-dependent methyltransferase domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRI3_9STRA)

HSP 1 Score: 168 bits (425), Expect = 3.140e-45
Identity = 109/257 (42.41%), Postives = 145/257 (56.42%), Query Frame = 3
Query:  285 REQFL-----LGGWAALLGSAYLGANQDQRSYRARKRDLFR----SIAGDGKDGK-AEFRDILEVGVGGNPKVGGFSNLGYYRRGQNIVGVDPALSGEPSEALERATSRAQQLGLTLRGMGGEAEELPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVEHVHAPEEGLSILGLRQQQDLLDPLQQQLADGCHLTRETGRLIRDSTGGPSSSSR----LFSRIERIEELRVKSMWPVSEQVFGVVVK 1013
            RE FL     LG  A LL  +      ++R+Y    ++LF     S +G G+ G+      +LE+GVG         N+ YY  G  +VG+DP L+    +A+  A S+A+   +    + G AE LPF   SFDAVVSTLVFCSV+D   AL EV+RVLRPGGKFLFVEH+ A E+   +L   + Q ++DPLQ  L +GCHL R T  L+   T G     R    LF R+ER+  L + + WPVS QV GV+VK
Sbjct:  154 RESFLPALIALGSGALLLNKSL----NEERAYEGLHQELFALLSASASGAGEAGRDVRAPKVLEIGVGQGV------NVKYYPSGCEVVGLDPNLN---QDAMSVAQSKAKARNIQWSALEGRAESLPFPDASFDAVVSTLVFCSVQDQARALTEVARVLRPGGKFLFVEHIWAGEKEHPVL--HRVQGIMDPLQAFLVNGCHLVRHTDDLLLGETKGGGGRDREGVKLFDRVERLNYLEMDTQWPVSVQVAGVLVK 395          
BLAST of mRNA_P-littoralis_Contig117.29.2 vs. uniprot
Match: A0A7S1WP52_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WP52_ALECA)

HSP 1 Score: 152 bits (383), Expect = 1.990e-41
Identity = 92/186 (49.46%), Postives = 114/186 (61.29%), Query Frame = 3
Query:  438 ILEVGVGGNPKVGGFSNLGYYRRGQNIVGVDPALSGEPSEALERATSRAQQLGLTLRGMGGEAEELPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVEHVHAPEEGLSILGLRQQQDLLDPLQQQLADGCHLTRETGRLIRDST-GGPSSSSRLFSRIERIEELRVKSMWPVSEQ 992
            +LEVG+ G P      NL +Y  G  + G+D +L G   +   R   RA++LGL +  + G+A +LPFE GSFDAVV T V CSV DP  ALREVSRVL PGG+F +VEHV A + G     L  QQ L+DPLQQ LA  CHL R+T  LIR S  G  + S  LFSR E  +   V  MWP+S+Q
Sbjct:    9 VLEVGIAGAP------NLEFYPSGTQLTGLDSSLPGGDQQRDTR--ERARELGLDISWVMGDASQLPFEDGSFDAVVMTKVLCSVADPEVALREVSRVLAPGGRFGYVEHV-AADPGSP---LETQQLLVDPLQQALAGNCHLHRDTDGLIRRSLRGSAAGSGGLFSREEAGQRYEVWEMWPISQQ 182          
BLAST of mRNA_P-littoralis_Contig117.29.2 vs. uniprot
Match: A0A7S3YFG5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFG5_HETAK)

HSP 1 Score: 154 bits (390), Expect = 8.290e-41
Identity = 105/296 (35.47%), Postives = 162/296 (54.73%), Query Frame = 3
Query:  195 RTAVAPLIMSLKEEQEESGESRYLSLTNLTREQFLLGG---WAALLGSA--YLGANQDQRSYRARKRDLFRSIAGDGKDGKAEFRDILEVGVGGNPKVGGFSNLGYYRRGQNIVGVDPALSGEPSEALERATSRAQQLGLTLRGMGGEAEELPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVEHVHAPEEGLSILGLRQQQDLLDPLQQQLADGCHLTRETGRLIR------------DSTGGPSSSSRL------FSRIERIEELRVKSMWPVSEQVFGVVVK 1013
            R  V  L M++ ++    GES+  SL +LTR+  +  G   +  LL SA  +L    D        +++F +I+G       +F D+LE+GVG         N+ YY++G  + G+DP L  + S  ++  ++   +  +  +     AE LP+E  SFDAVV TLV C++ DP  A  E+ RVLRPGGK+LFVEHV A  +G S   L++QQ++LDPLQQ L +GCHL R+T  ++             D+ G PSS          F+++E+  E+ + S WP++ Q+ GV+V+
Sbjct:   49 RVGVRELCMNVGDD----GESQTGSLLSLTRKDAIALGLSLFPGLLVSANIFLSVKSDNYLDENIHKEIFGAISGQ------DFIDVLEIGVGTAV------NMKYYQKGTKLFGIDPYL--DESSLVKAKSTWIGKNNIDFQYAKASAETLPYEDCSFDAVVGTLVMCTIPDPQKAFEEIYRVLRPGGKYLFVEHVLA--DGPSHQALKKQQEVLDPLQQILVNGCHLARKTENILLVDCSQDKKGDGDDAQGEPSSGDPRRRAHYPFTKLEQYHEVYLDSRWPINRQISGVLVR 324          
BLAST of mRNA_P-littoralis_Contig117.29.2 vs. uniprot
Match: A0A7S2IAZ8_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2IAZ8_9DINO)

HSP 1 Score: 154 bits (390), Expect = 1.100e-40
Identity = 91/193 (47.15%), Postives = 122/193 (63.21%), Query Frame = 3
Query:  438 ILEVGVGGNPKVGGFSNLGYYRRGQNIVGVDPALSGEPSEALERATSRAQQLGLTLRGMGGEAEELPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVEHVHAPEEGLSILGLRQQQDLLDPLQQQLADGCHLTRETGRLIRDSTG-GPSSSSRLFSRIERIEELRVKSMWPVSEQVFGVVVK 1013
            +LE+G+ G P      NL YY  G  +VG+D  L G P + ++     A++ G+ +  + G+AE+LPF+  SFDAVV T V CSV DP A LREVSRVL PGG+F +VEHV A + G +   L  QQ  +DPLQQ LA  CHL R+T RLI  S G   ++++ LFSR E +E  +V  MWP+++Q  GVV K
Sbjct:  156 VLEIGIAGAP------NLEYYPSGTRLVGLDGNLPG-PGDQID-IRKHAKEFGVDISWVRGDAEKLPFKDRSFDAVVMTKVLCSVIDPEAVLREVSRVLVPGGRFGYVEHV-AADPGSA---LEAQQLFVDPLQQALAGNCHLHRDTDRLIHRSIGTSDATTAGLFSREESVERYQVWEMWPIAQQAAGVVTK 336          
BLAST of mRNA_P-littoralis_Contig117.29.2 vs. uniprot
Match: A0A7S1XQV9_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQV9_9STRA)

HSP 1 Score: 150 bits (379), Expect = 5.780e-40
Identity = 99/240 (41.25%), Postives = 140/240 (58.33%), Query Frame = 3
Query:  300 LGGWAALLGSAYLGANQDQRSYRARKRDLF-RSIAGDGKDGKAEFRDILEVGVGGNPKVGGFSNLGYYRRGQNIVGVDPALSGEPSEALER-ATSRAQQLGLTLRGMGGEAEELPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVEHVHAPEEGLSILGLRQQQDLLDPLQQQLADGCHLTRETGRLIRDSTGGPSSSSRLFSRIERIEELRVKSMWPVSEQVFGVVVK 1013
            +GG+A+ +G       + + +Y   KR+LF R +  D          +LEVG+G    + G + L YY +G  + G++P L  + + A+ R AT+R  +L LT RG G   E+LPF  GSFDAVV++LV CS +DP A + E  RVLR GG+F+FVEH+HA E+   +   R QQ  LDPLQQ+LADGCHL RE   L +D+      + R   RIE +  + V S WP + Q+ G + K
Sbjct:   36 IGGYASGVGLWAARVARAESAYSDAKRELFGRYLRPDDA--------VLEVGIG----LEG-ATLDYYPKGCRVTGLEPRLRDDNAAAMRRRATARDLRLELT-RGCG---EDLPFPPGSFDAVVTSLVLCSAKDPKAVVEEAHRVLRRGGRFVFVEHIHALEDAAFM---RWQQATLDPLQQRLADGCHLQRENDALFKDA------AERGLFRIEELRYVDVPSRWPCNVQMMGCMAK 249          
BLAST of mRNA_P-littoralis_Contig117.29.2 vs. uniprot
Match: A0A7S0N8D1_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N8D1_9CHLO)

HSP 1 Score: 144 bits (364), Expect = 7.970e-37
Identity = 98/243 (40.33%), Postives = 133/243 (54.73%), Query Frame = 3
Query:  312 AALLGSAYLGANQDQRSYRARKRDLFRSIAGDGKDGKAEFRDILEVGVGGNPKVGGFSNLGYYRRGQNIVGVDPALSGEPSEAL-ERATSRAQQLGLTLRGMGGEAEELPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVEHVHAPEEGLSILGLRQQQDLLDPLQQQLADGCHLTRETGRLIRDSTGG--PSSSSR------LFSRIERIEELRVKSMWPVSEQVFGVVVK 1013
            A +  S   G +  + +   RK+ LF ++        A  +D+LE+G+G  P      NL YYR G  +VGV      EP+E + E A  +A+ LGL+L    G  E LP E  S D VV TLV C+V DP   L EV+RVLRPGG++LF++HV A + G ++L    QQ LLD LQQ +A GCHLTR+TG LI  +T    PSS+        LF  +  IE   V  +W ++  V GV  +
Sbjct:  121 AVIAASMESGMDTYEANIEQRKQALFATL-------DAGAKDVLELGIGTGP------NLKYYRPGTRVVGV------EPNEYMDEYAREKAEALGLSLELRRGVGEALPLEDASVDVVVGTLVMCTVADPARVLAEVARVLRPGGQYLFIDHV-AADPGTTLLF---QQRLLDGLQQFVAGGCHLTRKTGELIESATKSAVPSSAKAGTVIAPLFDDVT-IERFMVDDIWVIAPHVAGVATR 339          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.29.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKI6_9PHAE3.070e-15169.94Methyltransf_11 domain-containing protein n=1 Tax=... [more]
D7FYW0_ECTSI2.280e-8285.53Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A835Z8C0_9STRA2.560e-5642.22Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A4D9CZT3_9STRA1.520e-4641.04Methyltransf_11 domain-containing protein n=1 Tax=... [more]
W7TRI3_9STRA3.140e-4542.41S-adenosylmethionine-dependent methyltransferase d... [more]
A0A7S1WP52_ALECA1.990e-4149.46Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S3YFG5_HETAK8.290e-4135.47Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2IAZ8_9DINO1.100e-4047.15Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7S1XQV9_9STRA5.780e-4041.25Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S0N8D1_9CHLO7.970e-3740.33Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig117contigP-littoralis_Contig117:81175..85090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FYW0
PFAMsMethyltransf_11
Model size1016
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons7
Evalue2.76e-83
EggNOG OGsCOG0500@1|root,KOG4300@2759|Eukaryota
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-19_002680.1
Descriptionmethyltransferase activity
Cds size987
COG categoryQ
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig117.29.2prot_P-littoralis_Contig117.29.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig117 81175..85061 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789487.4829338-CDS-P-littoralis_Contig117:81174..812711680789487.4829338-CDS-P-littoralis_Contig117:81174..81271Pylaiella littoralis U1_48CDSP-littoralis_Contig117 81175..81271 -
1680789487.4925325-CDS-P-littoralis_Contig117:81653..818081680789487.4925325-CDS-P-littoralis_Contig117:81653..81808Pylaiella littoralis U1_48CDSP-littoralis_Contig117 81654..81808 -
1680789487.5043108-CDS-P-littoralis_Contig117:82259..823041680789487.5043108-CDS-P-littoralis_Contig117:82259..82304Pylaiella littoralis U1_48CDSP-littoralis_Contig117 82260..82304 -
1680789487.511954-CDS-P-littoralis_Contig117:82544..827441680789487.511954-CDS-P-littoralis_Contig117:82544..82744Pylaiella littoralis U1_48CDSP-littoralis_Contig117 82545..82744 -
1680789487.5221946-CDS-P-littoralis_Contig117:83184..832701680789487.5221946-CDS-P-littoralis_Contig117:83184..83270Pylaiella littoralis U1_48CDSP-littoralis_Contig117 83185..83270 -
1680789487.530054-CDS-P-littoralis_Contig117:83821..839611680789487.530054-CDS-P-littoralis_Contig117:83821..83961Pylaiella littoralis U1_48CDSP-littoralis_Contig117 83822..83961 -
1680789487.5436008-CDS-P-littoralis_Contig117:84797..850611680789487.5436008-CDS-P-littoralis_Contig117:84797..85061Pylaiella littoralis U1_48CDSP-littoralis_Contig117 84798..85061 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789487.5519686-UTR-P-littoralis_Contig117:85061..850901680789487.5519686-UTR-P-littoralis_Contig117:85061..85090Pylaiella littoralis U1_48UTRP-littoralis_Contig117 85062..85090 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig117.29.2

>prot_P-littoralis_Contig117.29.2 ID=prot_P-littoralis_Contig117.29.2|Name=mRNA_P-littoralis_Contig117.29.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=329bp
MWQSVQVFALLCWHAEAFVIPCATRATQTASRFVSGTRIFSFRQQRRTPI
NRGSGRTAVAPLIMSLKEEQEESGESRYLSLTNLTREQFLLGGWAALLGS
AYLGANQDQRSYRARKRDLFRSIAGDGKDGKAEFRDILEVGVGGNPKVGG
FSNLGYYRRGQNIVGVDPALSGEPSEALERATSRAQQLGLTLRGMGGEAE
ELPFESGSFDAVVSTLVFCSVRDPVAALREVSRVLRPGGKFLFVEHVHAP
EEGLSILGLRQQQDLLDPLQQQLADGCHLTRETGRLIRDSTGGPSSSSRL
FSRIERIEELRVKSMWPVSEQVFGVVVK*
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mRNA from alignment at P-littoralis_Contig117:81175..85090-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig117.29.2 ID=mRNA_P-littoralis_Contig117.29.2|Name=mRNA_P-littoralis_Contig117.29.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3916bp|location=Sequence derived from alignment at P-littoralis_Contig117:81175..85090- (Pylaiella littoralis U1_48)
GGATATCTGCTCTATCAACTGCACCGATCATGTGGCAATCCGTGCAGGTT TTTGCATTGCTGTGTTGGCATGCTGAAGCATTCGTCATTCCTTGTGCCAC AAGAGCGACGCAGACAGCATCACGTTTCGTCTCCGGCACCAGGATATTTT CGTTTCGACAACAACGGAGGACACCCATCAATAGAGGTAGCGGAAGAACT GCTGTGGCGCCCCTGATCATGAGCCTCAAAGAGGAGCAGGAAGAATCTGG CGAAAGTCGTTACCTGTCGTTGACGAACCTGACGAGAGAGCAGGTGGGGT TTCCGGTAGATTGCAGATTAGAGATAGCCTGCATACGCGTAGAGCTGTCA AGGGAAGCGTAAAATGGACGTACAGCGCGGCCTGCATCTTTGGTGTGGTG CTCTTGTCTGGTTGCAGAGAAGAACTCAGGCAGCGGTAGCTTTGCCACAG GTACTCATGCCCGACGGTGTTTGAAAGAGGCAAACACATTGATGTTTGTG TAAGTTTTTTAAAAAATAATAAAATAAAAACCCTGAAGCAACACTGAAAG CGAGACATTCGTGCCCACGACACATGTTCTACCCGCCCAACAGGGAGAGC AGAGGGCAGCAAAAATGTTTTGGAGAAAAATTAGAAAAACATGAAAGAGA GAAAACCGCCTTGAGACGGGACTTCGTCGGAAATGTGTTGAGCTATCTTC TTGACAGCAGTGAGGGTTTGGTATGTCGGCCGGAAATGAAAACGTTCTCT AAATACATGCATATGGTACCTGGTAGTGAACAGCAGAAGTTTCTCCCCCT CACAGCTCTGCAAACTGAAATGGTGTGTTACGGGTTCCGAGTTTCGCGGT GTGCCTAGGCCCGAGCAGCTCCGTGCGGAAACGCGCACACGTGTTGTTTG TTATCGTGTGCGATGGTAGCCGTAAACATTGGCGTCGTCGATTAGATGCA ACTTGGCGTCTCCCGTATCTTGGTAGACGCGGATAACACCTTGACCAGAG GCCCTCTGTTCGTGCCGTCCAAAAAACAATAGAGAAAGAGGCAGGGAAGA AGAGAGGATAACGCTCTGACCTGACGATGTGCTTCACGTACGTAGTCCCA CCCGTTTCCAATGCTCCTAATGCTCGCAGTTCCTTCTTGGCGGTTGGGCG GCGCTTCTCGGGTCAGCTTACCTCGGAGCTAACCAAGACCAACGTTCGTA TCGCGCCCGTAAGCGAGACCTGTTCAGAAGCATCGCCGGTGATGGGAAGG ACGGGAAGGCCGAGTTCAGGTGATAATATGGCAACGCCTGGTGTGCGGCA TATCTAACACCGAGTAGCCGATGTTTTGTTATATATACTGGTGTGGGCGT TGCACCAGAACGTGTCAAACGACTGCGGTAAAGAGTGAGCGAGTACTCAT GTGTACCAACGTAGCTAGGAACAGGACCTGGTTGCGAAGGCGTAACATTC TCTGCTACAGCAGTACCAGCGGTTACGGGCGCGCTTGCTCTTCACGTGGC CGACCCCTTTTGAAACACCATGGTGCCTCGGGACCCTCGGGCGTGTCGTC CTTTGACCGCAAGGGTCAAAATGGGCTCAAGCCCCCTACTGTATCGTACT TCGATCTAAGGGGTGCACTGACCTCTGGGGCCTTCATGATCTCCAAGATG TACGTTTGAGTGTCTCGAGAGGGGTCATCTGCTCTATCATGATGGCTTAA GAGCATGGCTGCAAGTCTAGCTGCTGATTTCCCCCCTCCCACGCTGCTTC GTCGAACCGCCGTCAACTGAAAACCCTGTCTCACCTCTGGCACATTGTAA ACCGGCCGGAATAACCAAAGAGATATACTGGAGGTGGGAGTTGGGGGTAA TCCAAAGGTGGGCGGCTTCAGCAACTTGGGGTACTACCGCCGCGGGCAGA ACATAGGTGATTGGTTGATTTCCTGAGTTCGCACGGATTGCTCCTGTTCA TACTTGTTGTGGCCGCTGCCAAAGCCGGCCATCTCCCTTGTACCACGATA TGAATGTCAACAACAAACTGCCGTGTCTCGTTGACGGTATTCTGCAAAGC GTTTTGGGAAGCAATCCTGCGCAATAATGAGTCGTGTTTCTGGTCCGCTC CAGAGTCAAGCCCACTTGGGTTTGCACCAAACCGAAGCCCCTGCACCCCA GACTATACGCACTCTCCCCAGGCCAAACACAAGTAACGGTACTTGACATT TGATTCAATCCGTGCCTGCCCGCCCCATCCCAGCCTCGTAAAGACTCGCG GTTTCATGGCGTTCGCAATGACGGCCACGCATGATCATGACCACCACTCG CTCCCCCTCCCCCACCGCCTCCCCGCACATGCCCACCCACACCCAGTTGG AGTCGACCCCGCGTTGTCGGGAGAGCCATCGGAGGCGCTTGAGCGGGCGA CGTCAAGGGCGCAACAGCTGGGTTTGACTCTGCGAGGGATGGGAGGGGAG GCAGAGGAGCTGCCTTTCGAATCCGGATCGTTCGACGCGGTTGTATCTAC GTTAGTGTTCTGCTCAGTTCGCGACCCCGTGGCTGCTTTACGAGAGGTTA GTTTCGTTGTTTGTGCTCGGGTTGATTTTGGTGCGCACGTTGAAGAATAC TGAGGGCGTCGGGTGGGCAGGCTTTTTTAAGTACTCGGCGTAACATTGTT GAAATCAACCGAGCGAGACCAACAGTTTGCTGTCGTGTGTCGTTCGGAAA CACGGGGTTTGCCAAGCCGCTGTCTCGACAACCCGCGAAAAAAACGTTGC CGTGGCTTTGCTCCTTCGGTTTGCATTTTTTGGCAGGTATCGAGAGTGCT TCGGCCAGGAGGGAAGTTTCTGTTTGTGGAGGTGAGTATCTTGAGATTCA AAGCCATGCCAGCCCCCTGATATATTGTTGTTTTTCTTTTTGTGATGCCA CACCGTTCGATGAACGCCGTCTTGTTTTGTGGGATCCGTTCGGTATGAGG GTTTGAACCCTTGGCGTACATCGACGTGTCCGGGTGCGATATGTCACTGT TGTTGCACAAGCACCTCGTACCAGCTCTACGCATGCAAACCTGCAACTCT GGCTGCTGTAGATAGCAGCCGATTTTTTGGGACACGAACTGCAGGCGGAT CGATGCTTCACATTGTTGAGTTTCCTCGTGGCAATGCGCGTTTCCACTTC AAGACTCCTGACAGCAGGAACACTTCCAGGTCCTGGTCCTAAAAAATCGA CCGAGCACGACCACTTGCAATCGTTCCACTGCCCTCTGGTACAATGGTGG CGTTTGTTTCGGCGGTTTTTATTTTCTCCCAGCATGTACACGCACCGGAA GAGGGCTTGTCGATTCTCGGCCTTCGTCAGCAGCAAGATCTGCTGGACCC CCTGCAGCAGCAACTGGCCGATGGGTGCCACCTCACTCGCGAGACAGGCC GGCTGATCAGAGACTCCACTGGCGGACCATCCTCGAGGTAGGGAAGAGGC AGTGCGTGTGTTAACCATGCCCCTCGCGCACGAAAATCTCGTGTCAGGGG GGCCGAAGGCTAGACCCTTGACTGCTTTTTCATAACATGCTTGTTGTTCT TTGCTTGCATTGCCTTCGATTTTACACCCTCAAAACACACGCTTCCTGCC GTATCATAGCACGATATTCACAGAAAATCACCTCAAGTTGTTCCAGCAGT TCTTATACTTCAAGTGCTCCAGCCGCAGATCATGGTATATTTTGCATCGA TTGCCGAGGCCAAGCAACATGTTGAGGACTCCAAAAGATGGATTACTGAT CTCTCTACACCACCCCTCCCACCGCCCAACGTATGTGTGCTGTGCTCGCT CCGTCGCATGCTGGCGCAGCAGTCGACTGTTCTCGCGGATAGAGCGGATT GAGGAACTTCGGGTGAAAAGTATGTGGCCAGTTTCCGAGCAGGTTTTCGG CGTGGTCGTGAAGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig117:81175..85090-

>mRNA_P-littoralis_Contig117.29.2 ID=mRNA_P-littoralis_Contig117.29.2|Name=mRNA_P-littoralis_Contig117.29.2|organism=Pylaiella littoralis U1_48|type=CDS|length=987bp|location=Sequence derived from alignment at P-littoralis_Contig117:81175..85090- (Pylaiella littoralis U1_48)
ATGTGGCAATCCGTGCAGGTTTTTGCATTGCTGTGTTGGCATGCTGAAGC
ATTCGTCATTCCTTGTGCCACAAGAGCGACGCAGACAGCATCACGTTTCG
TCTCCGGCACCAGGATATTTTCGTTTCGACAACAACGGAGGACACCCATC
AATAGAGGTAGCGGAAGAACTGCTGTGGCGCCCCTGATCATGAGCCTCAA
AGAGGAGCAGGAAGAATCTGGCGAAAGTCGTTACCTGTCGTTGACGAACC
TGACGAGAGAGCAGTTCCTTCTTGGCGGTTGGGCGGCGCTTCTCGGGTCA
GCTTACCTCGGAGCTAACCAAGACCAACGTTCGTATCGCGCCCGTAAGCG
AGACCTGTTCAGAAGCATCGCCGGTGATGGGAAGGACGGGAAGGCCGAGT
TCAGAGATATACTGGAGGTGGGAGTTGGGGGTAATCCAAAGGTGGGCGGC
TTCAGCAACTTGGGGTACTACCGCCGCGGGCAGAACATAGTTGGAGTCGA
CCCCGCGTTGTCGGGAGAGCCATCGGAGGCGCTTGAGCGGGCGACGTCAA
GGGCGCAACAGCTGGGTTTGACTCTGCGAGGGATGGGAGGGGAGGCAGAG
GAGCTGCCTTTCGAATCCGGATCGTTCGACGCGGTTGTATCTACGTTAGT
GTTCTGCTCAGTTCGCGACCCCGTGGCTGCTTTACGAGAGGTATCGAGAG
TGCTTCGGCCAGGAGGGAAGTTTCTGTTTGTGGAGCATGTACACGCACCG
GAAGAGGGCTTGTCGATTCTCGGCCTTCGTCAGCAGCAAGATCTGCTGGA
CCCCCTGCAGCAGCAACTGGCCGATGGGTGCCACCTCACTCGCGAGACAG
GCCGGCTGATCAGAGACTCCACTGGCGGACCATCCTCGAGCAGTCGACTG
TTCTCGCGGATAGAGCGGATTGAGGAACTTCGGGTGAAAAGTATGTGGCC
AGTTTCCGAGCAGGTTTTCGGCGTGGTCGTGAAGTGA
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