mRNA_P-littoralis_Contig666.60.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig666.60.1
Unique NamemRNA_P-littoralis_Contig666.60.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig666.60.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.620e-35
Identity = 83/155 (53.55%), Postives = 114/155 (73.55%), Query Frame = 2
Query:    5 ESETDSGEVGTGGNLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAAGRAREMAAEQRRATKIKNLKGEYELSDPESAEYFALRAALRFTFRQPLTDFLDNPASAATTPASGAGGLPP 469
            ESET+ G VG+ GNL STAIRTFAGAGE QSRA+V+K+ A V +  A E FRQ+R+ Q +++  AV+TL+D+V A++ LDEEAA RARE AAE R+  K+ N++G  E S+ +SA+Y+ LRAA++  + QPL+DF++    AATTP+  AG   P
Sbjct:  321 ESETEPGGVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFRQKRLAQGDQITKAVKTLADSVAARRVLDEEAAVRARETAAESRKQRKVNNMRGLLEFSEVDSAQYYELRAAIKAVYHQPLSDFMEAIPPAATTPSPEAGSSTP 475          
BLAST of mRNA_P-littoralis_Contig666.60.1 vs. uniprot
Match: A0A6H5K3M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.600e-18
Identity = 70/141 (49.65%), Postives = 89/141 (63.12%), Query Frame = 2
Query:   44 NLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAAGRAREMAAEQRRATKIKNLKGEYELSDPESAEYFALRAALRFTFRQPLTDFLDNPASAATTPASGAGGLP 466
            +L S+AIR FAGAGE QSRA+VKKE AAV A  AQE+  + +   T KLV AV+ LS AVV++Q LDEEAA RAR   A   +  KI +L+G+ E +  E  +  ALRA++   +     DF+  P SA T PA  AGG P
Sbjct:   63 DLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQAPRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRARWDYARLAKQAKIDDLRGKLEFT-LEGPKAMALRASISALYDMDDADFMPKPISAPTPPA--AGGAP 200          
BLAST of mRNA_P-littoralis_Contig666.60.1 vs. uniprot
Match: A0A6H5J848_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J848_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.060e-17
Identity = 69/137 (50.36%), Postives = 87/137 (63.50%), Query Frame = 2
Query:   44 NLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAAGRAREMAAEQRRATKIKNLKGEYELSDPESAEYFALRAALRFTFRQPLTDFLDNPASAATTPASGA 454
            +L S AIR F GAGE +S A+VK ETAAV A  AQ + R+ +   T KLV AV+ LS AVV++Q LDEEAAGRAR   A + +  KI +LKG  E + P   +   LRAA+   + QP + FL  P SAAT P +GA
Sbjct:   70 DLSSNAIRMFTGAGEIESLAQVK-ETAAVAAANAQLQARRVQETNTGKLVTAVEALSAAVVSRQSLDEEAAGRARLADAREAKKAKIADLKGMLEYA-PSEQKTMELRAAIMAAYEQPDSYFLAKPISAATPPGAGA 204          
BLAST of mRNA_P-littoralis_Contig666.60.1 vs. uniprot
Match: A0A6H5JU95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU95_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.230e-12
Identity = 58/111 (52.25%), Postives = 73/111 (65.77%), Query Frame = 2
Query:   44 NLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAAGRAREMAAEQRRATKIKNLKGEYELSDPESAEYFALRAAL 376
            +L S+AIR FAGAGE QSRA+VKKE AAV A  AQE+ R+ +   T  LV AV  LS AVV++Q LDEEAA RAR   A   +  KI +L+G+ E +  E     ALRA++
Sbjct:   63 DLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQARRVQQAHTVFLVTAVGALSAAVVSRQALDEEAAHRARWDYARLAKKAKIDDLRGKLEFT-LEGPTAMALRASI 172          
BLAST of mRNA_P-littoralis_Contig666.60.1 vs. uniprot
Match: A0A6H5KXV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV2_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 3.510e-9
Identity = 49/78 (62.82%), Postives = 56/78 (71.79%), Query Frame = 2
Query:   44 NLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQ---TEKLVGAVQTLSDAVVAKQRLDEEAAGRAR 268
            +L S+AIR FAG GE QSRA+VKKE AAV A  AQE+  Q R  Q   T KLV AV+ LS AVV++Q LDEEAA RAR
Sbjct:  189 DLSSSAIRMFAGGGEIQSRAQVKKEHAAVAAANAQEQAEQARRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRAR 266          
BLAST of mRNA_P-littoralis_Contig666.60.1 vs. uniprot
Match: A0A6H5JWP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP9_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 9.740e-8
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   47 LDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAA 256
            L S+AIRTFAGA E QSRA+VK E  AV A  AQE+ R+ +   T KLV AV+ LS AVV++Q LDE+AA
Sbjct:  165 LSSSAIRTFAGADEIQSRAQVKNEHTAVAAANAQEQARRVQQAHTGKLVTAVEALSAAVVSRQALDEDAA 234          
BLAST of mRNA_P-littoralis_Contig666.60.1 vs. uniprot
Match: A0A6H5KPB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB5_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 9.880e-8
Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = 2
Query:   44 NLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAAGRAR 268
            +L S+AIR FAG GE QSRA++KKE A V A  AQE+ R+ +   T KLV AV  LS AVV+ Q LDEEAA R R
Sbjct:  150 DLSSSAIRMFAGTGEIQSRAQMKKEHAVVAAANAQEQARRVQQAHTGKLVTAVGALSAAVVSMQALDEEAAHRGR 224          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig666.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE1.620e-3553.55Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K3M7_9PHAE6.600e-1849.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J848_9PHAE1.060e-1750.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU95_9PHAE1.230e-1252.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXV2_9PHAE3.510e-962.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWP9_9PHAE9.740e-860.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPB5_9PHAE9.880e-858.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig666contigP-littoralis_Contig666:156427..157177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size751
Hectar predicted targeting categoryother localisation
Exons1
Cds size495
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791387.1961222-UTR-P-littoralis_Contig666:156426..1565951680791387.1961222-UTR-P-littoralis_Contig666:156426..156595Pylaiella littoralis U1_48UTRP-littoralis_Contig666 156427..156595 +
1680791387.2248685-UTR-P-littoralis_Contig666:157090..1571771680791387.2248685-UTR-P-littoralis_Contig666:157090..157177Pylaiella littoralis U1_48UTRP-littoralis_Contig666 157091..157177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791387.2140608-CDS-P-littoralis_Contig666:156595..1570901680791387.2140608-CDS-P-littoralis_Contig666:156595..157090Pylaiella littoralis U1_48CDSP-littoralis_Contig666 156596..157090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig666.60.1prot_P-littoralis_Contig666.60.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig666 156596..157090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig666.60.1

>prot_P-littoralis_Contig666.60.1 ID=prot_P-littoralis_Contig666.60.1|Name=mRNA_P-littoralis_Contig666.60.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=165bp
MGQTEKLVGAVQTLSDAVVAKQRLDEEAAGRAREMAAEQRRATKIKNLKG
EYELSDPESAEYFALRAALRFTFRQPLTDFLDNPASAATTPASGAGGLPP
RLRASHCLLRQCLLLLPCRDFRWSVETVRHRARLVPGRLPSDRLRDECGD
VPATGGRQSFRIVT*
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mRNA from alignment at P-littoralis_Contig666:156427..157177+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig666.60.1 ID=mRNA_P-littoralis_Contig666.60.1|Name=mRNA_P-littoralis_Contig666.60.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=751bp|location=Sequence derived from alignment at P-littoralis_Contig666:156427..157177+ (Pylaiella littoralis U1_48)
CGAGGAGAGCGAGACTGACTCGGGCGAGGTGGGGACCGGCGGCAACCTTG ACTCGACGGCCATCCGGACGTTCGCCGGCGCCGGTGAGGCTCAAAGCCGA GCGAAGGTCAAGAAGGAAACCGCGGCGGTGCACGCAAACGTCGCGCAAGA GAAGTTTCGCCAACAAAGAATGGGCCAAACAGAAAAACTGGTAGGGGCCG TGCAGACGCTGTCGGACGCCGTTGTCGCGAAGCAGCGTCTGGACGAAGAG GCCGCCGGTAGGGCACGCGAGATGGCGGCAGAGCAGCGAAGGGCGACAAA GATAAAAAACCTCAAAGGGGAATATGAATTATCGGATCCGGAGTCAGCCG AGTACTTCGCCCTACGTGCCGCACTCAGGTTTACATTCCGGCAACCCCTG ACCGACTTCTTGGACAACCCCGCCTCGGCTGCGACAACACCTGCGTCAGG AGCTGGGGGGCTTCCCCCCCGACTTCGGGCGTCGCATTGTCTGCTGCGGC AATGCCTGCTCTTGCTGCCATGCCGGGATTTTCGATGGTCGGTGGAGACG GTGCGGCATCGAGCGCGGTTGGTACCGGGGAGGTTGCCATCTGATCGTCT ACGTGACGAATGCGGTGATGTACCCGCTACCGGCGGGAGACAATCCTTTC GCATTGTGACGTAGCCGACCCCCCCCACACACACTGAAGATGTGTTTCGC ACGGTCAACGCACCAGAGCGCGCGTTTTTTTTTCTTTGTGTTTCATCGAC G
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Coding sequence (CDS) from alignment at P-littoralis_Contig666:156427..157177+

>mRNA_P-littoralis_Contig666.60.1 ID=mRNA_P-littoralis_Contig666.60.1|Name=mRNA_P-littoralis_Contig666.60.1|organism=Pylaiella littoralis U1_48|type=CDS|length=495bp|location=Sequence derived from alignment at P-littoralis_Contig666:156427..157177+ (Pylaiella littoralis U1_48)
ATGGGCCAAACAGAAAAACTGGTAGGGGCCGTGCAGACGCTGTCGGACGC
CGTTGTCGCGAAGCAGCGTCTGGACGAAGAGGCCGCCGGTAGGGCACGCG
AGATGGCGGCAGAGCAGCGAAGGGCGACAAAGATAAAAAACCTCAAAGGG
GAATATGAATTATCGGATCCGGAGTCAGCCGAGTACTTCGCCCTACGTGC
CGCACTCAGGTTTACATTCCGGCAACCCCTGACCGACTTCTTGGACAACC
CCGCCTCGGCTGCGACAACACCTGCGTCAGGAGCTGGGGGGCTTCCCCCC
CGACTTCGGGCGTCGCATTGTCTGCTGCGGCAATGCCTGCTCTTGCTGCC
ATGCCGGGATTTTCGATGGTCGGTGGAGACGGTGCGGCATCGAGCGCGGT
TGGTACCGGGGAGGTTGCCATCTGATCGTCTACGTGACGAATGCGGTGAT
GTACCCGCTACCGGCGGGAGACAATCCTTTCGCATTGTGACGTAG
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