mRNA_P-littoralis_Contig666.60.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig666.60.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE) HSP 1 Score: 141 bits (355), Expect = 1.620e-35 Identity = 83/155 (53.55%), Postives = 114/155 (73.55%), Query Frame = 2
Query: 5 ESETDSGEVGTGGNLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAAGRAREMAAEQRRATKIKNLKGEYELSDPESAEYFALRAALRFTFRQPLTDFLDNPASAATTPASGAGGLPP 469
ESET+ G VG+ GNL STAIRTFAGAGE QSRA+V+K+ A V + A E FRQ+R+ Q +++ AV+TL+D+V A++ LDEEAA RARE AAE R+ K+ N++G E S+ +SA+Y+ LRAA++ + QPL+DF++ AATTP+ AG P
Sbjct: 321 ESETEPGGVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFRQKRLAQGDQITKAVKTLADSVAARRVLDEEAAVRARETAAESRKQRKVNNMRGLLEFSEVDSAQYYELRAAIKAVYHQPLSDFMEAIPPAATTPSPEAGSSTP 475
BLAST of mRNA_P-littoralis_Contig666.60.1 vs. uniprot
Match: A0A6H5K3M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M7_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 6.600e-18 Identity = 70/141 (49.65%), Postives = 89/141 (63.12%), Query Frame = 2
Query: 44 NLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAAGRAREMAAEQRRATKIKNLKGEYELSDPESAEYFALRAALRFTFRQPLTDFLDNPASAATTPASGAGGLP 466
+L S+AIR FAGAGE QSRA+VKKE AAV A AQE+ + + T KLV AV+ LS AVV++Q LDEEAA RAR A + KI +L+G+ E + E + ALRA++ + DF+ P SA T PA AGG P
Sbjct: 63 DLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQAPRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRARWDYARLAKQAKIDDLRGKLEFT-LEGPKAMALRASISALYDMDDADFMPKPISAPTPPA--AGGAP 200
BLAST of mRNA_P-littoralis_Contig666.60.1 vs. uniprot
Match: A0A6H5J848_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J848_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 1.060e-17 Identity = 69/137 (50.36%), Postives = 87/137 (63.50%), Query Frame = 2
Query: 44 NLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAAGRAREMAAEQRRATKIKNLKGEYELSDPESAEYFALRAALRFTFRQPLTDFLDNPASAATTPASGA 454
+L S AIR F GAGE +S A+VK ETAAV A AQ + R+ + T KLV AV+ LS AVV++Q LDEEAAGRAR A + + KI +LKG E + P + LRAA+ + QP + FL P SAAT P +GA
Sbjct: 70 DLSSNAIRMFTGAGEIESLAQVK-ETAAVAAANAQLQARRVQETNTGKLVTAVEALSAAVVSRQSLDEEAAGRARLADAREAKKAKIADLKGMLEYA-PSEQKTMELRAAIMAAYEQPDSYFLAKPISAATPPGAGA 204
BLAST of mRNA_P-littoralis_Contig666.60.1 vs. uniprot
Match: A0A6H5JU95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU95_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 1.230e-12 Identity = 58/111 (52.25%), Postives = 73/111 (65.77%), Query Frame = 2
Query: 44 NLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAAGRAREMAAEQRRATKIKNLKGEYELSDPESAEYFALRAAL 376
+L S+AIR FAGAGE QSRA+VKKE AAV A AQE+ R+ + T LV AV LS AVV++Q LDEEAA RAR A + KI +L+G+ E + E ALRA++
Sbjct: 63 DLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQARRVQQAHTVFLVTAVGALSAAVVSRQALDEEAAHRARWDYARLAKKAKIDDLRGKLEFT-LEGPTAMALRASI 172
BLAST of mRNA_P-littoralis_Contig666.60.1 vs. uniprot
Match: A0A6H5KXV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV2_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 3.510e-9 Identity = 49/78 (62.82%), Postives = 56/78 (71.79%), Query Frame = 2
Query: 44 NLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQ---TEKLVGAVQTLSDAVVAKQRLDEEAAGRAR 268
+L S+AIR FAG GE QSRA+VKKE AAV A AQE+ Q R Q T KLV AV+ LS AVV++Q LDEEAA RAR
Sbjct: 189 DLSSSAIRMFAGGGEIQSRAQVKKEHAAVAAANAQEQAEQARRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRAR 266
BLAST of mRNA_P-littoralis_Contig666.60.1 vs. uniprot
Match: A0A6H5JWP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP9_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 9.740e-8 Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 2
Query: 47 LDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAA 256
L S+AIRTFAGA E QSRA+VK E AV A AQE+ R+ + T KLV AV+ LS AVV++Q LDE+AA
Sbjct: 165 LSSSAIRTFAGADEIQSRAQVKNEHTAVAAANAQEQARRVQQAHTGKLVTAVEALSAAVVSRQALDEDAA 234
BLAST of mRNA_P-littoralis_Contig666.60.1 vs. uniprot
Match: A0A6H5KPB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB5_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 9.880e-8 Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = 2
Query: 44 NLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAAGRAR 268
+L S+AIR FAG GE QSRA++KKE A V A AQE+ R+ + T KLV AV LS AVV+ Q LDEEAA R R
Sbjct: 150 DLSSSAIRMFAGTGEIQSRAQMKKEHAVVAAANAQEQARRVQQAHTGKLVTAVGALSAAVVSMQALDEEAAHRGR 224 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig666.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig666.60.1 >prot_P-littoralis_Contig666.60.1 ID=prot_P-littoralis_Contig666.60.1|Name=mRNA_P-littoralis_Contig666.60.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=165bp MGQTEKLVGAVQTLSDAVVAKQRLDEEAAGRAREMAAEQRRATKIKNLKGback to top mRNA from alignment at P-littoralis_Contig666:156427..157177+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig666.60.1 ID=mRNA_P-littoralis_Contig666.60.1|Name=mRNA_P-littoralis_Contig666.60.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=751bp|location=Sequence derived from alignment at P-littoralis_Contig666:156427..157177+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig666:156427..157177+ >mRNA_P-littoralis_Contig666.60.1 ID=mRNA_P-littoralis_Contig666.60.1|Name=mRNA_P-littoralis_Contig666.60.1|organism=Pylaiella littoralis U1_48|type=CDS|length=495bp|location=Sequence derived from alignment at P-littoralis_Contig666:156427..157177+ (Pylaiella littoralis U1_48)back to top |