mRNA_P-littoralis_Contig651.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig651.34.1
Unique NamemRNA_P-littoralis_Contig651.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.460e-21
Identity = 50/89 (56.18%), Postives = 63/89 (70.79%), Query Frame = 2
Query:   35 RSMAQWAVVLEELDAATLWPEEDDDDDVPRAKRTRCIKERKNWKQSAWWTQLQEEDLAVPTSDAAKVFRERFRVPHAFFLRLVELSREK 301
            R++AQWAV L   D A  W E+  + D P  KR+R +KER++W  SAWW QLQ  DL   T++AAKVFR RFRVPHAFFL LV+++R K
Sbjct:   32 RTLAQWAVALRAFDDAFEW-EDSGEQDGPPVKRSRQVKERRDWSTSAWWLQLQNADLLDHTTEAAKVFRTRFRVPHAFFLELVKMARGK 119          
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Match: A0A6H5K5C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C1_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.620e-20
Identity = 49/89 (55.06%), Postives = 61/89 (68.54%), Query Frame = 2
Query:   35 RSMAQWAVVLEELDAATLWPEEDDDDDVPRAKRTRCIKERKNWKQSAWWTQLQEEDLAVPTSDAAKVFRERFRVPHAFFLRLVELSREK 301
            R++AQWAV L   D A  W E+  + D P  KR+R +KER+NW  SAWW QLQ  DL   T++ AKVF  RFRVPHAFFL LV+++R K
Sbjct:  224 RTLAQWAVALRAFDDAFEW-EDSGEQDGPPVKRSRQVKERRNWSTSAWWLQLQNADLLDHTTEEAKVFHTRFRVPHAFFLELVKMARGK 311          
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Match: A0A6H5J9W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W9_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 8.160e-20
Identity = 50/89 (56.18%), Postives = 60/89 (67.42%), Query Frame = 2
Query:   35 RSMAQWAVVLEELDAATLWPEEDDDDDVPRAKRTRCIKERKNWKQSAWWTQLQEEDLAVPTSDAAKVFRERFRVPHAFFLRLVELSREK 301
            R+MAQW V L   D A  W E+  + D P  KR+R +KERK+W  SAWW QLQ+  L    +DAAK FR RFRVPHAFFL LV+L+R K
Sbjct:   32 RTMAQWEVALRAFDDAFEW-EDSGEQDGPPVKRSRQVKERKDWSTSAWWLQLQDAALLDHATDAAKAFRTRFRVPHAFFLELVKLARGK 119          
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 8.050e-17
Identity = 48/99 (48.48%), Postives = 68/99 (68.69%), Query Frame = 2
Query:    8 EQHDRQTRVRSMAQWAVVLEELDAATLWPEEDDDDDV-PRAKRTRCIKERKNWKQSAWWTQLQEEDLAVPTSDAAKVFRERFRVPHAFFLRLVELSREK 301
            E+  R+   RS++ W  VL + D+      ED+++ V P+ KRTR + +R++W+ SAWW +LQ+ DLA  T+ AAKVFRERFRVP+ FF  LV+LSR K
Sbjct:   25 EEDGRRRTARSVSYWDAVLFDEDS------EDEEEVVGPKVKRTRRVTQRRDWRTSAWWEKLQDVDLADHTTAAAKVFRERFRVPYPFFQELVKLSRAK 117          
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 7.910e-15
Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 2
Query:   35 RSMAQWAVVLEELDAATLWPEEDDDDDV-PRAKRTRCIKERKNWKQSAWWTQLQEEDLAVPTSDAAKVFRERFRVPHAFFLRLVELSREK 301
            RS++ W  VL + D+      ED+++ V P+AKRTR + +R++W+ SAWW QLQ  DLA  T+ AA VFR RFRVP+ FF  LV+LSR K
Sbjct:   34 RSVSYWDAVLFDEDS------EDEEEVVGPKAKRTRRVTQRRDWRTSAWWEQLQHVDLADHTTAAATVFRGRFRVPYPFFQNLVKLSRAK 117          
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Match: A0A6H5JV87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV87_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.610e-12
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 2
Query:   35 RSMAQWAVVLEELDAATLWPEEDDDDDV-PRAKRTRCIKERKNWKQSAWWTQLQEEDLAVPTSDAAKVFRERFRVPHAFF 271
            RS++ W  V  + D+      ED+++ V P+ KRT+ + +R++W+ SAWW QLQ+ DLA   + AAKVFR RFRVP+ FF
Sbjct:   34 RSVSYWDAVPFDEDS------EDEEEVVGPKVKRTQRVTQRRDWRTSAWWEQLQDVDLADHATAAAKVFRGRFRVPYPFF 107          
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Match: A0A6H5K4P1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4P1_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.920e-8
Identity = 39/89 (43.82%), Postives = 48/89 (53.93%), Query Frame = 2
Query:   35 RSMAQWAVVLEELDAATLWPEEDDDDDVPRAKRTRCIKERKNWKQSAWWTQLQEEDLAVPTSDAAKVFRERFRVPHAFFLRLVELSREK 301
            R++AQWAV L   D A  W E+  + D P  KR+R         Q+ W T             AAKVFR RFRVPHAFFL LV+++R K
Sbjct:   32 RTLAQWAVALRAFDDAFEW-EDSGEQDCPPVKRSR---------QTCWTT----------PQKAAKVFRTRFRVPHAFFLELVKMARGK 100          
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Match: A0A6H5K5L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L5_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.770e-7
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 2
Query:   35 RSMAQWAVVLEELDAATLWPEEDDDDDV-PRAKRTRCIKERKNWKQSAWWTQLQEEDLAVPTSDAAKVFR 241
            RS++ W  VL + D+      ED+++ V P+ KRTR + ER++W+ SAWW QLQ+ DLA  T+ AA V R
Sbjct:   36 RSVSHWDAVLFDEDS------EDEEEVVGPKVKRTRRVTERRDWRTSAWWEQLQDVDLADHTTAAASVSR 99          
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.120e-5
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 2
Query:  173 AWWTQLQEEDLAVPTSDAAKVFRERFRVPHAFFLRLVELSREK 301
            AW   L++EDL  PTS AAK FRE FRVP+ FFLRLVEL ++K
Sbjct:   64 AWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKK 106          
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 7.040e-5
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 2
Query:   56 VVLEELDAATLWPEEDDD-DDVPRAKRTRCIKERKNWKQSAWWTQLQEEDLAVPTSDAAKVFRERFRVPHAFFLRLVELSREKS 304
            V L+E+    L  EE+D   D+ R + +R  ++RK  ++ AW   L+++DL    S  +K FR  FRVP AFFLRLV L + K+
Sbjct:   22 VALDEVQRNDLSQEEEDTAPDLTRPRLSRTQRQRKYVERCAWARMLEDKDLEESNSRTSKQFRLDFRVPCAFFLRLVALVKSKN 105          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JCU6_9PHAE4.460e-2156.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5C1_9PHAE2.620e-2055.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9W9_9PHAE8.160e-2056.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE8.050e-1748.48DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KEB6_9PHAE7.910e-1551.11DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JV87_9PHAE3.610e-1246.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4P1_9PHAE2.920e-843.82Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5L5_9PHAE1.770e-745.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE1.120e-565.12Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FPI7_ECTSI7.040e-540.48Transposon protein, putative, Pong sub-class n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig651contigP-littoralis_Contig651:165205..165567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size363
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791363.3100178-UTR-P-littoralis_Contig651:165204..1652121680791363.3100178-UTR-P-littoralis_Contig651:165204..165212Pylaiella littoralis U1_48UTRP-littoralis_Contig651 165205..165212 -
1680791363.3339639-UTR-P-littoralis_Contig651:165527..1655671680791363.3339639-UTR-P-littoralis_Contig651:165527..165567Pylaiella littoralis U1_48UTRP-littoralis_Contig651 165528..165567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791363.3240647-CDS-P-littoralis_Contig651:165212..1655271680791363.3240647-CDS-P-littoralis_Contig651:165212..165527Pylaiella littoralis U1_48CDSP-littoralis_Contig651 165213..165527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig651.34.1prot_P-littoralis_Contig651.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig651 165213..165527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig651.34.1

>prot_P-littoralis_Contig651.34.1 ID=prot_P-littoralis_Contig651.34.1|Name=mRNA_P-littoralis_Contig651.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MAQWAVVLEELDAATLWPEEDDDDDVPRAKRTRCIKERKNWKQSAWWTQL
QEEDLAVPTSDAAKVFRERFRVPHAFFLRLVELSREKSGSQSEERMQQAV
RISQ*
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mRNA from alignment at P-littoralis_Contig651:165205..165567-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig651.34.1 ID=mRNA_P-littoralis_Contig651.34.1|Name=mRNA_P-littoralis_Contig651.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig651:165205..165567- (Pylaiella littoralis U1_48)
CCACAGCGAGCAGCACGATCGACAAACACGCGTGCGCTCGATGGCACAGT GGGCTGTTGTACTCGAGGAGTTGGATGCTGCTACTTTGTGGCCAGAGGAG GATGATGACGACGACGTGCCGCGTGCGAAGCGGACGAGATGCATCAAGGA GCGAAAGAACTGGAAGCAGTCTGCCTGGTGGACGCAACTTCAGGAGGAAG ATCTTGCCGTGCCCACGTCCGATGCGGCGAAGGTATTCCGAGAGCGCTTT CGCGTGCCTCACGCCTTCTTCCTGAGGTTGGTGGAGCTGTCGAGGGAGAA GAGTGGTTCTCAGTCGGAGGAGAGGATGCAGCAGGCCGTGAGGATATCCC AGTAGAACTCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig651:165205..165567-

>mRNA_P-littoralis_Contig651.34.1 ID=mRNA_P-littoralis_Contig651.34.1|Name=mRNA_P-littoralis_Contig651.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig651:165205..165567- (Pylaiella littoralis U1_48)
ATGGCACAGTGGGCTGTTGTACTCGAGGAGTTGGATGCTGCTACTTTGTG
GCCAGAGGAGGATGATGACGACGACGTGCCGCGTGCGAAGCGGACGAGAT
GCATCAAGGAGCGAAAGAACTGGAAGCAGTCTGCCTGGTGGACGCAACTT
CAGGAGGAAGATCTTGCCGTGCCCACGTCCGATGCGGCGAAGGTATTCCG
AGAGCGCTTTCGCGTGCCTCACGCCTTCTTCCTGAGGTTGGTGGAGCTGT
CGAGGGAGAAGAGTGGTTCTCAGTCGGAGGAGAGGATGCAGCAGGCCGTG
AGGATATCCCAGTAG
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