mRNA_P-littoralis_Contig651.34.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 4.460e-21 Identity = 50/89 (56.18%), Postives = 63/89 (70.79%), Query Frame = 2
Query: 35 RSMAQWAVVLEELDAATLWPEEDDDDDVPRAKRTRCIKERKNWKQSAWWTQLQEEDLAVPTSDAAKVFRERFRVPHAFFLRLVELSREK 301
R++AQWAV L D A W E+ + D P KR+R +KER++W SAWW QLQ DL T++AAKVFR RFRVPHAFFL LV+++R K
Sbjct: 32 RTLAQWAVALRAFDDAFEW-EDSGEQDGPPVKRSRQVKERRDWSTSAWWLQLQNADLLDHTTEAAKVFRTRFRVPHAFFLELVKMARGK 119
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Match: A0A6H5K5C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C1_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 2.620e-20 Identity = 49/89 (55.06%), Postives = 61/89 (68.54%), Query Frame = 2
Query: 35 RSMAQWAVVLEELDAATLWPEEDDDDDVPRAKRTRCIKERKNWKQSAWWTQLQEEDLAVPTSDAAKVFRERFRVPHAFFLRLVELSREK 301
R++AQWAV L D A W E+ + D P KR+R +KER+NW SAWW QLQ DL T++ AKVF RFRVPHAFFL LV+++R K
Sbjct: 224 RTLAQWAVALRAFDDAFEW-EDSGEQDGPPVKRSRQVKERRNWSTSAWWLQLQNADLLDHTTEEAKVFHTRFRVPHAFFLELVKMARGK 311
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Match: A0A6H5J9W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W9_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 8.160e-20 Identity = 50/89 (56.18%), Postives = 60/89 (67.42%), Query Frame = 2
Query: 35 RSMAQWAVVLEELDAATLWPEEDDDDDVPRAKRTRCIKERKNWKQSAWWTQLQEEDLAVPTSDAAKVFRERFRVPHAFFLRLVELSREK 301
R+MAQW V L D A W E+ + D P KR+R +KERK+W SAWW QLQ+ L +DAAK FR RFRVPHAFFL LV+L+R K
Sbjct: 32 RTMAQWEVALRAFDDAFEW-EDSGEQDGPPVKRSRQVKERKDWSTSAWWLQLQDAALLDHATDAAKAFRTRFRVPHAFFLELVKLARGK 119
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 8.050e-17 Identity = 48/99 (48.48%), Postives = 68/99 (68.69%), Query Frame = 2
Query: 8 EQHDRQTRVRSMAQWAVVLEELDAATLWPEEDDDDDV-PRAKRTRCIKERKNWKQSAWWTQLQEEDLAVPTSDAAKVFRERFRVPHAFFLRLVELSREK 301
E+ R+ RS++ W VL + D+ ED+++ V P+ KRTR + +R++W+ SAWW +LQ+ DLA T+ AAKVFRERFRVP+ FF LV+LSR K
Sbjct: 25 EEDGRRRTARSVSYWDAVLFDEDS------EDEEEVVGPKVKRTRRVTQRRDWRTSAWWEKLQDVDLADHTTAAAKVFRERFRVPYPFFQELVKLSRAK 117
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 7.910e-15 Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 2
Query: 35 RSMAQWAVVLEELDAATLWPEEDDDDDV-PRAKRTRCIKERKNWKQSAWWTQLQEEDLAVPTSDAAKVFRERFRVPHAFFLRLVELSREK 301
RS++ W VL + D+ ED+++ V P+AKRTR + +R++W+ SAWW QLQ DLA T+ AA VFR RFRVP+ FF LV+LSR K
Sbjct: 34 RSVSYWDAVLFDEDS------EDEEEVVGPKAKRTRRVTQRRDWRTSAWWEQLQHVDLADHTTAAATVFRGRFRVPYPFFQNLVKLSRAK 117
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Match: A0A6H5JV87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV87_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 3.610e-12 Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 2
Query: 35 RSMAQWAVVLEELDAATLWPEEDDDDDV-PRAKRTRCIKERKNWKQSAWWTQLQEEDLAVPTSDAAKVFRERFRVPHAFF 271
RS++ W V + D+ ED+++ V P+ KRT+ + +R++W+ SAWW QLQ+ DLA + AAKVFR RFRVP+ FF
Sbjct: 34 RSVSYWDAVPFDEDS------EDEEEVVGPKVKRTQRVTQRRDWRTSAWWEQLQDVDLADHATAAAKVFRGRFRVPYPFF 107
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Match: A0A6H5K4P1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4P1_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 2.920e-8 Identity = 39/89 (43.82%), Postives = 48/89 (53.93%), Query Frame = 2
Query: 35 RSMAQWAVVLEELDAATLWPEEDDDDDVPRAKRTRCIKERKNWKQSAWWTQLQEEDLAVPTSDAAKVFRERFRVPHAFFLRLVELSREK 301
R++AQWAV L D A W E+ + D P KR+R Q+ W T AAKVFR RFRVPHAFFL LV+++R K
Sbjct: 32 RTLAQWAVALRAFDDAFEW-EDSGEQDCPPVKRSR---------QTCWTT----------PQKAAKVFRTRFRVPHAFFLELVKMARGK 100
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Match: A0A6H5K5L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L5_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 1.770e-7 Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 2
Query: 35 RSMAQWAVVLEELDAATLWPEEDDDDDV-PRAKRTRCIKERKNWKQSAWWTQLQEEDLAVPTSDAAKVFR 241
RS++ W VL + D+ ED+++ V P+ KRTR + ER++W+ SAWW QLQ+ DLA T+ AA V R
Sbjct: 36 RSVSHWDAVLFDEDS------EDEEEVVGPKVKRTRRVTERRDWRTSAWWEQLQDVDLADHTTAAASVSR 99
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 53.1 bits (126), Expect = 1.120e-5 Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 2
Query: 173 AWWTQLQEEDLAVPTSDAAKVFRERFRVPHAFFLRLVELSREK 301
AW L++EDL PTS AAK FRE FRVP+ FFLRLVEL ++K
Sbjct: 64 AWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKK 106
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI) HSP 1 Score: 50.8 bits (120), Expect = 7.040e-5 Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 2
Query: 56 VVLEELDAATLWPEEDDD-DDVPRAKRTRCIKERKNWKQSAWWTQLQEEDLAVPTSDAAKVFRERFRVPHAFFLRLVELSREKS 304
V L+E+ L EE+D D+ R + +R ++RK ++ AW L+++DL S +K FR FRVP AFFLRLV L + K+
Sbjct: 22 VALDEVQRNDLSQEEEDTAPDLTRPRLSRTQRQRKYVERCAWARMLEDKDLEESNSRTSKQFRLDFRVPCAFFLRLVALVKSKN 105 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig651.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig651.34.1 >prot_P-littoralis_Contig651.34.1 ID=prot_P-littoralis_Contig651.34.1|Name=mRNA_P-littoralis_Contig651.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp MAQWAVVLEELDAATLWPEEDDDDDVPRAKRTRCIKERKNWKQSAWWTQLback to top mRNA from alignment at P-littoralis_Contig651:165205..165567- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig651.34.1 ID=mRNA_P-littoralis_Contig651.34.1|Name=mRNA_P-littoralis_Contig651.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig651:165205..165567- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig651:165205..165567- >mRNA_P-littoralis_Contig651.34.1 ID=mRNA_P-littoralis_Contig651.34.1|Name=mRNA_P-littoralis_Contig651.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig651:165205..165567- (Pylaiella littoralis U1_48)back to top |