mRNA_P-littoralis_Contig650.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig650.17.1
Unique NamemRNA_P-littoralis_Contig650.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig650.17.1 vs. uniprot
Match: A0A6H5LNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNU8_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 2.800e-47
Identity = 79/91 (86.81%), Postives = 86/91 (94.51%), Query Frame = 1
Query:    1 ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIATFGHRVVRYTPMTMFGKTWQEKLPGACLAVLVADAWRDSQVD 273
            +TWRVILCWASA R I+VDTQGIP+SLVNLQVRSG+DS+SPFFRQLNIATFGHRVVRY P+T FGK WQE+LPGACLAVLVADAWRDSQVD
Sbjct:  110 DTWRVILCWASAGRRIDVDTQGIPISLVNLQVRSGVDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQEQLPGACLAVLVADAWRDSQVD 200          
BLAST of mRNA_P-littoralis_Contig650.17.1 vs. uniprot
Match: A0A6H5J754_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J754_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 2.810e-47
Identity = 79/91 (86.81%), Postives = 86/91 (94.51%), Query Frame = 1
Query:    1 ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIATFGHRVVRYTPMTMFGKTWQEKLPGACLAVLVADAWRDSQVD 273
            +TWRVILCWASA R I+VDTQGIP+SLVNLQVRSG+DS+SPFFRQLNIATFGHRVVRY P+T FGK WQE+LPGACLAVLVADAWRDSQVD
Sbjct:  110 DTWRVILCWASAGRRIDVDTQGIPISLVNLQVRSGVDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQEQLPGACLAVLVADAWRDSQVD 200          
BLAST of mRNA_P-littoralis_Contig650.17.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 8.620e-46
Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 1
Query:    1 ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIATFGHRVVRYTPMTMFGKTWQEKLPGACLAVLVADAWRDSQVD 273
            ETWRVILCWASA R I+VD+QGIP SL++LQVRSG+DS+SP FRQLNIATFGHRVVRYTPMT FGK WQE+LPGACLAVLVAD WRDSQVD
Sbjct:  132 ETWRVILCWASAGRRIDVDSQGIPFSLLSLQVRSGVDSQSPLFRQLNIATFGHRVVRYTPMTAFGKKWQEQLPGACLAVLVADTWRDSQVD 222          
BLAST of mRNA_P-littoralis_Contig650.17.1 vs. uniprot
Match: A0A6H5K2W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2W2_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 2.730e-45
Identity = 74/91 (81.32%), Postives = 83/91 (91.21%), Query Frame = 1
Query:    1 ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIATFGHRVVRYTPMTMFGKTWQEKLPGACLAVLVADAWRDSQVD 273
            +TWRVILCWASA + I+VDTQGIP+SLVNLQVRSG+D +S FFRQLNIA FGHRVVRY P++ FGK WQE+LPGACLAVLVADAWRDSQVD
Sbjct:   95 DTWRVILCWASAGKRIDVDTQGIPISLVNLQVRSGVDLQSRFFRQLNIAAFGHRVVRYAPISAFGKKWQEQLPGACLAVLVADAWRDSQVD 185          
BLAST of mRNA_P-littoralis_Contig650.17.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 4.040e-45
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 1
Query:    1 ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIATFGHRVVRYTPMTMFGKTWQEKLPGACLAVLVADAWRDSQV 270
            E+WRVI CWASA REIEVDTQGIP+SLVNLQVRSG+DS+SPFFRQLNIATFGHRVVRY P+T FGK WQ++LPGACLAVLVA+ WRDSQV
Sbjct:  132 ESWRVIFCWASAGREIEVDTQGIPISLVNLQVRSGLDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQKQLPGACLAVLVAEVWRDSQV 221          
BLAST of mRNA_P-littoralis_Contig650.17.1 vs. uniprot
Match: A0A6H5JDB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB7_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 2.280e-43
Identity = 75/91 (82.42%), Postives = 82/91 (90.11%), Query Frame = 1
Query:    1 ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIATFGHRVVRYTPMTMFGKTWQEKLPGACLAVLVADAWRDSQVD 273
            ETWRVILCWASA REIEV+TQGIP+SLV+LQVRSG+DS+SP FR L IATFGHRVVRY P+T F K WQE+LPGACL VLVADAWRDSQVD
Sbjct:  125 ETWRVILCWASAGREIEVNTQGIPISLVDLQVRSGVDSQSPLFRPLTIATFGHRVVRYAPITAFRKKWQEQLPGACLVVLVADAWRDSQVD 215          
BLAST of mRNA_P-littoralis_Contig650.17.1 vs. uniprot
Match: A0A6H5KMS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMS8_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 6.450e-43
Identity = 76/90 (84.44%), Postives = 83/90 (92.22%), Query Frame = 1
Query:    1 ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIATFGHRVVRYTPMTMFGKTWQEKLPGACLAVLVADAWRDSQV 270
            E+WRVILCWASA R IEVDT GIP+SLV+LQVRSGIDS+SPFFRQLNIATFGHRVVRY P+T FGK WQ++LPGACLAVLVAD WRDSQV
Sbjct:  112 ESWRVILCWASAGRRIEVDT-GIPISLVSLQVRSGIDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQKQLPGACLAVLVADVWRDSQV 200          
BLAST of mRNA_P-littoralis_Contig650.17.1 vs. uniprot
Match: A0A6H5KR88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR88_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 4.240e-42
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 1
Query:    1 ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIATFGHRVVRYTPMTMFGKTWQEK-LPGACLAVLVADA 252
            +TWRVI CWASA R I+VDTQGIP+SLVNLQVRSG+DS+SPFFRQLNIATFGHRVVRY P+  FGK WQE+ LPGACLAVLVADA
Sbjct:  165 DTWRVIFCWASAGRRIDVDTQGIPISLVNLQVRSGVDSQSPFFRQLNIATFGHRVVRYAPIAAFGKKWQEQQLPGACLAVLVADA 249          
BLAST of mRNA_P-littoralis_Contig650.17.1 vs. uniprot
Match: A0A6H5KE79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE79_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 5.250e-41
Identity = 74/100 (74.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:    1 ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIATFGHRVVRYTPMTMF----------GKTWQEKLPGACLAVLVADAWRDSQV 270
            +TW VILCWASA R I+VDTQGIP+SLVNLQVRSG+DS+SP FRQLNIATFGHRVVRY P+T F          GK WQ++LPGACLAVLVAD WRDSQV
Sbjct:  112 DTWLVILCWASAGRRIDVDTQGIPISLVNLQVRSGVDSQSPLFRQLNIATFGHRVVRYAPITAFVXXXXXXXXXGKKWQKQLPGACLAVLVADVWRDSQV 211          
BLAST of mRNA_P-littoralis_Contig650.17.1 vs. uniprot
Match: A0A6H5KSM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM3_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 4.170e-38
Identity = 66/91 (72.53%), Postives = 77/91 (84.62%), Query Frame = 1
Query:    1 ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIATFGHRVVRYTPMTMFGKTWQEKLPGACLAVLVADAWRDSQVD 273
            +TWR ILCW SA R IE+D +GIP SL NLQVR+GI+S SP FRQLNIA+FGHRVVRY P+T F  TW+++LPGACLAVLVADAWRD Q+D
Sbjct:  135 DTWRAILCWGSAGRRIEIDHEGIPASLSNLQVRAGIESSSPRFRQLNIASFGHRVVRYEPLTTFCMTWKKRLPGACLAVLVADAWRDCQLD 225          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig650.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LNU8_9PHAE2.800e-4786.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J754_9PHAE2.810e-4786.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCS9_9PHAE8.620e-4684.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2W2_9PHAE2.730e-4581.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQN9_ECTSI4.040e-4584.44Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JDB7_9PHAE2.280e-4382.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMS8_9PHAE6.450e-4384.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR88_9PHAE4.240e-4282.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE79_9PHAE5.250e-4174.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSM3_9PHAE4.170e-3872.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig650contigP-littoralis_Contig650:53852..54126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQN9
Model size275
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.63e-46
EggNOG OGs2E3IK@1|root,2SAKM@2759|Eukaryota
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791361.6296325-CDS-P-littoralis_Contig650:53851..541241680791361.6296325-CDS-P-littoralis_Contig650:53851..54124Pylaiella littoralis U1_48CDSP-littoralis_Contig650 53852..54124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig650.17.1prot_P-littoralis_Contig650.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig650 53852..54124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig650.17.1

>prot_P-littoralis_Contig650.17.1 ID=prot_P-littoralis_Contig650.17.1|Name=mRNA_P-littoralis_Contig650.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp
ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIAT
FGHRVVRYTPMTMFGKTWQEKLPGACLAVLVADAWRDSQVD
back to top

mRNA from alignment at P-littoralis_Contig650:53852..54126+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig650.17.1 ID=mRNA_P-littoralis_Contig650.17.1|Name=mRNA_P-littoralis_Contig650.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=275bp|location=Sequence derived from alignment at P-littoralis_Contig650:53852..54126+ (Pylaiella littoralis U1_48)
GAGACCTGGCGAGTGATCCTCTGCTGGGCATCAGCTGACAGGGAGATCGA AGTCGACACCCAGGGCATCCCGATGTCTCTTGTGAACCTCCAGGTCCGAT CTGGTATCGACTCAAAGAGCCCGTTTTTCAGACAACTTAACATAGCGACC TTCGGGCACAGAGTCGTGAGATATACCCCCATGACCATGTTCGGCAAAAC GTGGCAAGAAAAGCTGCCAGGAGCCTGTCTCGCCGTCCTCGTCGCCGACG CTTGGCGCGATAGTCAAGTCGACCT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig650:53852..54126+

>mRNA_P-littoralis_Contig650.17.1 ID=mRNA_P-littoralis_Contig650.17.1|Name=mRNA_P-littoralis_Contig650.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig650:53852..54126+ (Pylaiella littoralis U1_48)
GAGACCTGGCGAGTGATCCTCTGCTGGGCATCAGCTGACAGGGAGATCGA
AGTCGACACCCAGGGCATCCCGATGTCTCTTGTGAACCTCCAGGTCCGAT
CTGGTATCGACTCAAAGAGCCCGTTTTTCAGACAACTTAACATAGCGACC
TTCGGGCACAGAGTCGTGAGATATACCCCCATGACCATGTTCGGCAAAAC
GTGGCAAGAAAAGCTGCCAGGAGCCTGTCTCGCCGTCCTCGTCGCCGACG
CTTGGCGCGATAGTCAAGTCGAC
back to top