mRNA_P-littoralis_Contig65.132.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig65.132.2
Unique NamemRNA_P-littoralis_Contig65.132.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig65.132.2 vs. uniprot
Match: D8LQG8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQG8_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 5.370e-90
Identity = 163/238 (68.49%), Postives = 183/238 (76.89%), Query Frame = 1 
Query:  148 RAAAFLFF---LAHRPVSSFLPPATHPGAGIATTLSGSTYQQRHAHTVLVRPRDALVV---MAEVDADMDIPGIADARLAGWRAAGKAASS---DGTTTADTSPAPEGNDDESGEPGCGDVVEYPLSDLVKKESDDDRQRGVAVIVSINKLRNDAWKLPEDILDKAELQVLCPDLDSDEEGVWMADELENCAFARLGEMKVLKSSFNGAMDKWKRWTISDELSEGCGARDSEWDYDML 834
            RAA FL     L  RP + F+  A  P AG A   +G+ ++QRH   V  RP  A V+   MAEVDAD  +PGIAD+RLAGWR   K A++   + T   D+    EG   ESGEPGCGDVVEYPL+DLVK ES D R++GVAVIVSINKLRNDAWKLPEDILDKAELQVLCPDLDS+EEGVWMADELE CAFA+LGEMKVLKSSFNGAMDKWKRWTISDELSEGCGARD+EW+YDML
Sbjct:    3 RAALFLSASCALLLRPATPFIRLA--PPAGAADP-AGAAHRQRHVRPVSARPHHARVLVNMMAEVDAD--VPGIADSRLAGWRVGSKQAATTATEDTAAVDSDADSEGGAGESGEPGCGDVVEYPLTDLVKNESTDGREKGVAVIVSINKLRNDAWKLPEDILDKAELQVLCPDLDSEEEGVWMADELETCAFAKLGEMKVLKSSFNGAMDKWKRWTISDELSEGCGARDAEWEYDML 235
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BLAST of mRNA_P-littoralis_Contig65.132.2 vs. uniprot
Match: A9TNT3_PHYPA (Predicted protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9TNT3_PHYPA)

HSP 1 Score: 80.9 bits (198), Expect = 3.750e-13
Identity = 49/121 (40.50%), Postives = 70/121 (57.85%), Query Frame = 1 
Query:  454 ESGEPGCG------DVVEYPLSDLVKKESDDDRQRGVAVIVSINKLRNDAWKLPEDILDKAELQVLCPDLDSDEEGVWMADELENCAFARLGEMKVLKSSFNGAMDKWKRWTISDELSEGC 798
            E+GE  CG      DVVEYPLSD +K +  DDR +GV ++VS N  R D  KL  + L   E++ L  + +S    VW AD +E  AFA L ++++L++ FN   D+W    + D+LS  C
Sbjct:  137 ENGESVCGTEAQNGDVVEYPLSDAIKAQHQDDRLKGVGLVVSRNIDRGDRDKLSVENLTLVEIEPLYREPNS---SVWRADPMEGAAFASLPDLRILRTEFNRVTDEW---IVLDDLSLDC 251
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.132.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQG8_ECTSI5.370e-9068.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A9TNT3_PHYPA3.750e-1340.50Predicted protein n=2 Tax=Physcomitrium patens Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig65contigP-littoralis_Contig65:672503..678068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3218.PP1S275_73V6.1
PFAMsDnaJ
Model size2335
Max annot lvl33090|Viridiplantae
Hectar predicted targeting categorychloroplast
Exons6
Evalue2.02e-15
EggNOG OGsCOG0484@1|root,KOG0715@2759|Eukaryota,380D8@33090|Viridiplantae
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_005590.1
DescriptionDnaJ molecular chaperone homology domain
Cds size705
COG categoryO
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig65.132.2prot_P-littoralis_Contig65.132.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig65 674001..677936 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791360.628457-UTR-P-littoralis_Contig65:672502..6740001680791360.628457-UTR-P-littoralis_Contig65:672502..674000Pylaiella littoralis U1_48UTRP-littoralis_Contig65 672503..674000 -
1680791360.7234488-UTR-P-littoralis_Contig65:677936..6780681680791360.7234488-UTR-P-littoralis_Contig65:677936..678068Pylaiella littoralis U1_48UTRP-littoralis_Contig65 677937..678068 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791360.6429806-CDS-P-littoralis_Contig65:674000..6741141680791360.6429806-CDS-P-littoralis_Contig65:674000..674114Pylaiella littoralis U1_48CDSP-littoralis_Contig65 674001..674114 -
1680791360.653491-CDS-P-littoralis_Contig65:675632..6757281680791360.653491-CDS-P-littoralis_Contig65:675632..675728Pylaiella littoralis U1_48CDSP-littoralis_Contig65 675633..675728 -
1680791360.6636138-CDS-P-littoralis_Contig65:676306..6764441680791360.6636138-CDS-P-littoralis_Contig65:676306..676444Pylaiella littoralis U1_48CDSP-littoralis_Contig65 676307..676444 -
1680791360.6814172-CDS-P-littoralis_Contig65:676870..6770531680791360.6814172-CDS-P-littoralis_Contig65:676870..677053Pylaiella littoralis U1_48CDSP-littoralis_Contig65 676871..677053 -
1680791360.6922054-CDS-P-littoralis_Contig65:677576..6776621680791360.6922054-CDS-P-littoralis_Contig65:677576..677662Pylaiella littoralis U1_48CDSP-littoralis_Contig65 677577..677662 -
1680791360.7112002-CDS-P-littoralis_Contig65:677848..6779361680791360.7112002-CDS-P-littoralis_Contig65:677848..677936Pylaiella littoralis U1_48CDSP-littoralis_Contig65 677849..677936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig65.132.2

>prot_P-littoralis_Contig65.132.2 ID=prot_P-littoralis_Contig65.132.2|Name=mRNA_P-littoralis_Contig65.132.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=235bp
MGCTARAAAFLFFLAHRPVSSFLPPATHPGAGIATTLSGSTYQQRHAHTV
LVRPRDALVVMAEVDADMDIPGIADARLAGWRAAGKAASSDGTTTADTSP
APEGNDDESGEPGCGDVVEYPLSDLVKKESDDDRQRGVAVIVSINKLRND
AWKLPEDILDKAELQVLCPDLDSDEEGVWMADELENCAFARLGEMKVLKS
SFNGAMDKWKRWTISDELSEGCGARDSEWDYDML*
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mRNA from alignment at P-littoralis_Contig65:672503..678068-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig65.132.2 ID=mRNA_P-littoralis_Contig65.132.2|Name=mRNA_P-littoralis_Contig65.132.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5566bp|location=Sequence derived from alignment at P-littoralis_Contig65:672503..678068- (Pylaiella littoralis U1_48)
GCCGGCTCCGAGGCACTCACAGCACGCTCGCTCGCTCACCACTCATCTAC
GCTAGCCCTGCGCAGCTGAAGCAGCAGCAGAAGCGTTCCGACGTCATTTT
CGAGCCAACCATCTCAAAGCCCAAGTTTAAGCATGGGCTGCACAGCGAGA
GCTGCTGCTTTTCTCTTCTTCCTGGCCCATCGTCCTGTTTCATCCTTCCT
GCCTCCGGCAACACACCCAGGTCTGATGCGCAGCACAGCAGTGTAGCCAC
TAGCCACGCCACCATTGACGAATTACGCTTGGTTCTCATGCCCTTTAGAA
ACTCTTATCGCTGTCAAGGACATGCTTTTGGTTCGAGGAGGTGAGAATGG
AAACATGAACCACATGCACGCACCTGTCGATTTCTCTCCCTCTCGTATTC
CTGCAGGGGCCGGGATTGCCACGACTCTTTCCGGCAGCACGTATCAGCAA
CGCCATGCGCACACTGTACTTGTACGCCCCCGCGATGCACTAGTGAGTGC
AGTATCCCCTTTTCGGTAGCTCTCTGTGGGACTTAGCTAGGCTGTGGAGG
AAGGAGAGCAGTCTCCGACAGGATGTGTCACATATACAAACTCCTGCGGG
TAATATACGGAAGCTACCACAACCCCCCGCCGTACGACTTTTTTCTTTTT
ATATACTAGTACGATGATACTCCGGAGCATATGCTTGCTGTAAGTAAGAC
AGTCAGTGCCAGCCGATAATGATGATGTTACATAGAAATTTCTCATCTAT
CATATCATATACAGATTTTTTCGAAAGCATATCGTTTTGTATTACTACTA
CTCGTGTAAATATCGGTTGAGGGGGTGTGGTATCTTGTGTCACCTATATC
AGTTCGTTGTTCGACCCGGCATCCAAGTATTTGTCCCAACACCGTCATCA
TACCTTAACACATCAGCCCCGACAACACCGCTTTCTTCTGTCCGAAACCC
AGTTATTGGTTCCGATCCAGTGGACCACAATGCAAGTCCTCAGCTGTCCC
CGCTCTCCCCGGTAGGTGGTCATGGCGGAGGTAGACGCGGACATGGACAT
CCCCGGCATCGCAGACGCGCGTTTGGCAGGATGGAGAGCGGCGGGCAAAG
CGGCATCATCAGACGGCACAACAACAGCAGACACCAGTCCTGCGCCGGAG
GGAAACGACGACGAAAGCGGGGAGCCAGGGTGTGGGGATGTGGTGGAGGT
ACGTTCTGCCATCGCTTGTCGTATGCCGTGCGGGTTTGCGGCAACGCACC
AGCTCTCGCTTCAAATACGAGCTCGCATCATATGATACCATGCATTGGTT
TTACTGCGTTTTCTACGGCCTATGAGATGTAGACCATGAGGTTTCAGCGA
ATACGCCTGTTGATAGCAGCAGCCCAAACGCCTCGCTACGTTGCTGCTAC
AATCCGCGAAAAGTCCCTCGCCCCGCACTGCTGTCTAATCTGAGTGCCAT
CTTGGCGGCATTTGCCTGCTGCACGTGATGTAGCACGTGCAGCGTGCCGT
TCGTGTTCACACTTCCGCACCACATTTATACCCGTCGACACGTTAGTCGG
TATTGCTGCAGATCGCAGACAATTTCCTCCAAAAAACAGCAGCGCATTCA
CTCCCTTCGTGACTGCTACAACAGTACCCCCTATCAGACCTGGTAAAGAA
AGAGTCGGATGACGACCGACAGAGGGGCGTGGCCGTCATCGTTAGCATCA
ACAAGCTGCGGAACGATGCCTGGAAACTCCCCGAGGATATTCTCGACAAA
GCTGAACTTCAGGTGCCGACTCGCTTCTTCCCGCGGCATAAAAAGACCCT
CGCGACTACGTACTGCTGGGTGGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTCTTGTTGTTTGTTGATCACATTTTGATAGCTCAATACCAACGTAG
TCTAGCCCGTAGTCACATATCGTGCTATCATGAGGAGGAAAATAAAACAT
AAGGGAAATGCTGTTTATTGACTTCGTTCCGAACGTGGACGATGCATTGC
TACGAGCATCGTACCGAGCGTGTGTGAAATGGTAAATGGTTCACCGGAGT
TCTGCAACACAAGTGCCTCTACTCCCAAGTGTAGCTTGCCGCAGTGCAGC
ACTGCGCGTCGTTGCAGTTGCTGTTGCCGAGGGCGGGATGACATGAACGT
CTTGCTGTATGGTGCTTCGGTGGCATGTTTCCTGCGTGACCAGCAGGCCG
TGTCTTGACGCGCTACGTGGTGCTTGTCAACAGTTGCACTGCTGTTGCCT
TTCTGGGAATCACCGAAGAAGAAGCCAAGAGTCTTCTGGTGTGTATGATC
CCGTTGCGGCTCGTGTGTGCCCTTCTGAACTTGCCGGCAGGTTCTGTGCC
CGGACCTTGACAGCGATGAGGAGGGTGTGTGGATGGCTGATGAGCTCGAA
AACTGTGCATTCGCCAGGCTCGGAGAGATGAAAGTGGTGAGTCACTTCGC
GGCCGTCCCATGACATGTCAGTGTTGTTCTGCCGTGGCAGCCCATAAATT
ACGCGAGCAGAGCTCGGCCGCTGTGCAAGGGCTTTACGCAGAGCTGAATG
TCGTCGGAGTGTTTCTTTTTGATTTTACTGCGGTGTATGCATTCGGTTCG
ACCACCGTACAGTCCAGAAAGATAGATGGACGCACAATGCAAGAATCGCA
AGAAAACGACTTATTGCTCCCGCCATGTCGACGTGTCTGCCTCATCGCCT
AAAGGCTTAAACAGTCCTTCGAGTCATGGGAGAAGGAATTGTGTACAAGG
TTGCCGGCTTGTGGTGTGTGTTCCGGAGCATCATCGGCACTGCCCCAAAG
ACACCGTTGTTCCAGGCAGAGCGTTTTCTGCCGCTCCCGTGGCCTGGCCT
TGCAGAGATGGGGTATGATAGAGCCGCGACAGACGCTGCGGTGGTGTTGC
TTGTTCAAATCACTTGTGTTTGACGAGGGAATCAGTATGTCGCCGTTGCC
GCCAGGCCTTTAGTCCACTACTGCTTTGGGGATCCCAGGGACAACAGATC
GTTGAGAGGCACGGATTTTGAAAAACAGCGAACGGGCCCTGACAACCACA
CACAGGGTACCTCACACCAGTAGGAAGTTGTCGGGAAAGAGGAACATTAA
ACTGTCGGTTATCGCACACAGCGGCGGCGGGAGCTTCTCTTTACATGCAT
TTCACATGTTTACCTCCAATCTCCCACGTAAATATCAAGATACAATTTTG
AACGACTTTCAAACCAAGTCAAAAGAGCTTATTTTGATAAGGCTCAAACA
TGGGCTGTTGTCCGCGGGAGTCCCGATAACCTCGAACCCATTGGAAACGT
CATGAAGTAGCTACATGGGCGTCGGCACATTCAGATCTGCTGCCGGGGCT
TAGATGTCGATGGTCGCAGCAGAGGATCAAAAACTTCGCAAAATGGACAG
ATTCTAAAAAACATGTTCCACTGGTGTGCTATCTCCCACTACTGTACTCG
CCGCCACATACCCCAACCTCCTGAACTACGGGTCAACAGCAGTAGCTCAT
GCCACTAGCTACCTCGGACGAACCGCAGATGAGAAGATTGGTGCCGATGG
CGGCGAGTGCAGCTGCGTCAAACGTTTGGTGTCAGTCCGGATTGCGGAGT
TTTTCAGGGATCCTGCGGAATTTTTATGCCACTGCTGCGAACTTCGATAT
CTAAGCCCCACAGCAGCAGATCTGAATGCGCCGACGCACACTTAGCTACT
TTCATGACGTTTCTGATTGGTTCGAGGTTATCGGGACTCCCGCGGACAAC
AGCCAATGTTTGAGCATTATCAATATAAGCTTTTTTGACTTGATTCAAGA
ATAAAAATGATCTTTCAGATCAAAAATTAGGTTTTTCAGTAAGGAATTTT
TTACCGCCCTGGTCCCTGGACCCTCAACCAGTACATACACTACGTGGCGT
GTGAGTGAGCGTTAATGTTCTACCTTCCACCCCCCGCGTTCGCCGTCTAT
TCAGTTGAAGTCATCATTCAACGGAGCGATGGACAAGTGGAAGCGGTGGA
CGATCTCAGACGAATTGAGCGAGGGTTGTGGCGCCAGGGACTCTGAATGG
GATTATGACATGCTCTAGTCTCGCGAAAGGCTCATGTCTCAACGCGAAGG
TAGTTTTGCTCCTTTGTTCTTGTGTTTAAGCTCTTGTCTAGTATGACATC
GTGCGAACAAGATGTTTTTTTTTATTATTATTATCTGGATTTCCTTCTGA
GCACGATTTGCTTCTCCTTTCATGCCGACAGAAGGCGGCGAAACAGGGAG
TCGCTGTGATGCTTGTTTTGGATGCGTTGGCAGGACCGCACACGAAAGCT
GCAGCAGAAGGCGCCTAAGCTCGCGCCCGAAGGTGTTCCACAGCAGTAGC
AGCTGGCGGCCCACGTTTACCACCACTGGTCCTTTTGGTTTCCGATTGTT
TTCTCCCGTGGTTTTCCGGAGCGTCGATTTTACCAGCCACGTCGAGGCGC
ACGATACTACCTTGGGCGCTGTGTGTCACGATGTTGTCGGGTGTTGCGGG
GTACCACTGTTTTTGTTCGATATGTTGTTTTCAGCGCACGGAAGTGGTTG
GATGCGACCGGCGTTCGCGATGTGCACGGGAAGGGTGCAAACACCGGAAG
TCTGACCAGAAGAATTCAAATCACGCAGGGACCGCCCGCCTCAGCTTTGA
GGACTTTGAGGGGAATGGTAGCCTGCGTGATGATCGTTTATATCTCGTTT
TTTTGCGTCCCAGCCCGGCGTTGTTGCCTGGATAGACACATCTCCCAACC
ATTCCTTTGAGAGTCTGCTCTCACTTTGGTGATTTCCTTCTGTGCATGTG
CGCCAATTGCCTGCGCCACGTGCTGCGACATCTGATTCTTCAGATCGTGA
TGAGCTGTCGTTTGTGTAACTCTCAGATACATTTCATATGTTTCCTTGAT
TGAGTGCTCCCTTTTCTGATTTTTCGGCAGCCGTTCGTGGTTCGTAAGTA
GACACCCGGTCATTCGGTCATTTCCCGTCATTTCCATATTTCCTGCTTCG
AAGTTCTACTGTTCTTCGTGACGTCGCGCCCTTTTCTCTCGCGGAGGAAA
CAAAAAAGCGGGATTCGGTCAAGTGCCAGGCCGCTCTTTCCACTCCGATC
TTCATTCCACTTTTGTCTGTGTATACGATGGCTTTGAGAGGTCACCGGTA
CTGTTTGTCAGCTGTATGGTTCCTATACTCGCGGGGGGGGAGTGTGGCGG
TGTCCGGTGGCGGGGCACGATAACCATTATCTAGCCAACGAAATGTTTGG
ATAAAGATGGAAGGGTGTTTCAGACGTACGTAGTACATGGTGTTGGCGTG
GGCTCGGCTTTGCGTTTATTTCTCGACGTTTGGCACCTGCAGTTGTTTCA
AGTTTTGTACGGTCCAACAGCCCCGGGTGCAACATAGCAGAAACGATCCT
TGACGTGATTCAGAGAGCGGAGGAAGCCGCGCCCTAGCCGGGGCTACGAT
TCGATCATCGATGGCGGTGTAGTGGCGCTCGAATACAAACAAAATCTCTC
ACCTGGTTTCATTACGCGACGTGTTCCTGTTCCAAGACTTCTTAGAAGAC
AGAGGCTGACCGTCGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig65:672503..678068-

>mRNA_P-littoralis_Contig65.132.2 ID=mRNA_P-littoralis_Contig65.132.2|Name=mRNA_P-littoralis_Contig65.132.2|organism=Pylaiella littoralis U1_48|type=CDS|length=705bp|location=Sequence derived from alignment at P-littoralis_Contig65:672503..678068- (Pylaiella littoralis U1_48)
ATGGGCTGCACAGCGAGAGCTGCTGCTTTTCTCTTCTTCCTGGCCCATCG
TCCTGTTTCATCCTTCCTGCCTCCGGCAACACACCCAGGGGCCGGGATTG
CCACGACTCTTTCCGGCAGCACGTATCAGCAACGCCATGCGCACACTGTA
CTTGTACGCCCCCGCGATGCACTAGTGGTCATGGCGGAGGTAGACGCGGA
CATGGACATCCCCGGCATCGCAGACGCGCGTTTGGCAGGATGGAGAGCGG
CGGGCAAAGCGGCATCATCAGACGGCACAACAACAGCAGACACCAGTCCT
GCGCCGGAGGGAAACGACGACGAAAGCGGGGAGCCAGGGTGTGGGGATGT
GGTGGAGTACCCCCTATCAGACCTGGTAAAGAAAGAGTCGGATGACGACC
GACAGAGGGGCGTGGCCGTCATCGTTAGCATCAACAAGCTGCGGAACGAT
GCCTGGAAACTCCCCGAGGATATTCTCGACAAAGCTGAACTTCAGGTTCT
GTGCCCGGACCTTGACAGCGATGAGGAGGGTGTGTGGATGGCTGATGAGC
TCGAAAACTGTGCATTCGCCAGGCTCGGAGAGATGAAAGTGTTGAAGTCA
TCATTCAACGGAGCGATGGACAAGTGGAAGCGGTGGACGATCTCAGACGA
ATTGAGCGAGGGTTGTGGCGCCAGGGACTCTGAATGGGATTATGACATGC
TCTAG
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