prot_P-littoralis_Contig65.41.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig65.41.1
Unique Nameprot_P-littoralis_Contig65.41.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length665
Homology
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A6H5L6L8_9PHAE (RNA_pol_sigma70 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6L8_9PHAE)

HSP 1 Score: 658 bits (1697), Expect = 1.510e-228
Identity = 389/679 (57.29%), Postives = 458/679 (67.45%), Query Frame = 0
Query:    3 LRNAAVVLSVTATSAQAGSAEWTRRRXXXXXXNTPAFAPGGAXXXRTGLGLSTQQXXXXXXXXXXXXXXXXXXXXQY--LSMQLKELSPSLASASAEESADYKRRSVIRVLFRDKNATEVTGWMKTLKNLDGPEMPFDEMLELKSEMDRSMKANKESTERRSRRYKHFDLGRNPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEVLYSDRAVAR---EKDPAAVQAC------------GWDDGDCDGHDDDDDRHYGGLPPAVLIGLVKQALEPHPAAAGEEEEGEEMRDARGNVVTGARRRLMGEAIQAERARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVMKRARSPDGCXXXXXGMEVGIVASGHPTEPPPVTPNLAWQPSLQAA 664
            L  AA VLSV ATSAQAGS EWTRRR      +  AF  GGA     G+G+                        Q   LSMQL  L          ES +YKRRSV R +F + +  EV+GWMKT K+LDGPEMPFDEM ++    D  ++A+KES E+  R+Y+HFDL RNP LLTK EEIELGRKVQELLRWERV+  LE+RLGR ATMEEWA ELA M G EG+ERE+ +M+AAR RMISCNLRLV+HIA++KFY G+SG+LK+SL+DMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQ IHCGFADCGRV+RLPM+LHTMVCKV+RLQTAM+DQLGRQPT+QELSLESGL+E+KV KCLRVN+VEPISLD   K + GHL+F+   + E++ D+++S +E EPV GADV+LLKTDVDTILGDLS REA+VLRMRFGIGG+SPSTL  VG+ L VTRERVRQIQ+AAI+KLRGRSP+H++LY+DRAV+    E+DPAA  A             GW           D+R YGGLP +V I LV +ALEP           +EM D  G VVTG RRR+M EA QAERA                                   FVMKRA SP        G   G  + G  + P P TP+  WQP+LQ A
Sbjct:    5 LHAAAAVLSVGATSAQAGSEEWTRRRGGSPTGDRFAFVGGGA-----GMGIRGGDGLLLTTPASAGISLRRRRSGQQHALSMQLNMLL-----YDDNESMEYKRRSVTRGIFGE-HEKEVSGWMKTFKSLDGPEMPFDEMCDMMDRGDSLLRASKESREKNMRKYRHFDLRRNPELLTKIEEIELGRKVQELLRWERVRMFLEMRLGRAATMEEWAAELATMGGVEGLEREIGIMKAARDRMISCNLRLVVHIAKRKFYKGASGTLKVSLDDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQGIHCGFADCGRVVRLPMSLHTMVCKVMRLQTAMVDQLGRQPTVQELSLESGLDERKVEKCLRVNQVEPISLDGYRKGKSGHLNFENSFRRERVGDSVKSVQETEPVDGADVSLLKTDVDTILGDLSEREAYVLRMRFGIGGSSPSTLETVGQELQVTRERVRQIQIAAIQKLRGRSPSHDLLYADRAVSLGRGEEDPAAAVAXXXXXXXAATANEGW-----------DERKYGGLPRSVFIDLVTRALEPPQ---------DEMLDKEGRVVTGGRRRVMMEAAQAERA--------------------------LVPKKLKKGFVMKRACSPRRRGRDGEGAP-GRGSGGGASLPVPRTPS--WQPTLQVA 623          
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A836CM85_9STRA (RNA polymerase sigma-70 factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM85_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.160e-54
Identity = 128/319 (40.13%), Postives = 181/319 (56.74%), Query Frame = 0
Query:  165 YKHFDLGRNPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGA---EGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGI-GGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLR 479
            Y HF     P LLTK EE+ L R VQ  ++WE V+  L    G+  T+ EWA+ +    G    E   +++    +A+  MIS NLRLVL +ARK  +  S GS  + L D++Q+G  GLVKAVE++DPE+GFRFSTYATWW+ Q I     D GR IRLP ++H  +  V R+  ++ ++LGR  + +EL+   GL  +K+         EPISL ++P    G L  DK      + D++     P P    +   ++ DVD +L  L+ RE  VLRMR+G+  G    TL  +G  + VTRERVRQI+  A+ +LR
Sbjct:   86 YVHFRQA--PELLTKEEEVSLARLVQRRIQWEAVRNRLASEFGKEPTLSEWAVAVGFRGGYPLDEEFSQQVAEGDSAKAAMISANLRLVLSLARK--HKASQGSRCLPLSDLVQEGILGLVKAVEKYDPERGFRFSTYATWWIRQTIARAVCDIGRTIRLPAHIHDSLRSVQRVGRSLSEELGRTASEEELAQRLGLTVEKLRWLHSCKYSEPISLSLQPGNGSG-LRPDKQSLTSTVGDSVHDTN-PTPEEYHNTMAIREDVDNLLSILTPREQTVLRMRYGLDSGGISETLEAIGVSIGVTRERVRQIERRALDRLR 398          
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A7S1B782_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.510e-53
Identity = 121/315 (38.41%), Postives = 186/315 (59.05%), Query Frame = 0
Query:  173 NPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEV 487
            N  LLT  EE+ L R VQ LL+WE V+  LE+ L R  T  EWA  +      + ++R+++  + A+  MI  NLRLV+ IA++  Y   + +L  S++D+ Q+G+ GLVKAVE+FDPE+GFRFSTYATWW+ Q++    AD  R IRLP+++H  +  V + +  +  +LGRQPT +E++  +G+   K+ + L  +  E +S +   +                I+    +++E  P   A ++L+K D+D +LG LS RE  V+RMRFG+      TL  +G+R  VTRER+RQI+  A+ KLR     H++
Sbjct:  183 NHDLLTAQEEVLLARHVQLLLKWEEVRERLEIELARPPTYAEWAAAVGV--DTKKLKRQIRRSQRAKAAMIESNLRLVISIAKR--YTSRTNTL--SVQDLCQEGSLGLVKAVEKFDPERGFRFSTYATWWIKQSVMRAIADQSRTIRLPVHIHDQLNTVRKHKRELTGKLGRQPTTEEIAEAAGITVDKL-QFLWKSSRETMSFEQEIRVGGAGXXXXXXXXXTVILSDSITDKEHMPEEKAALSLMKDDIDRLLGTLSVREQDVIRMRFGLDDGKAKTLEEIGKRFRVTRERIRQIEARALHKLRQPYRNHQI 490          
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A1Z5JFS9_FISSO (RNA polymerase primary sigma factor n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFS9_FISSO)

HSP 1 Score: 186 bits (472), Expect = 6.210e-50
Identity = 117/317 (36.91%), Postives = 182/317 (57.41%), Query Frame = 0
Query:  173 NPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISL--DVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEV 487
            N  LL + EEI L R++Q L++WE V+  LE  L R  T +EWA ++        ++++++    A+  +   N+RLV+ IA+K       G   +S +D+ Q+G  GL +A E+FDPE+GFRFSTYA+WW+ Q I    AD GR+IRLP+++H  +  V +L+  M  +LGR PT +E++ +S L  +K+    RV + E IS+  +VR  +  G             ++ +  + E +PV  A   +LK D+  ++  L++RE  V+RMRFG+      TL  +GR+  VTRER+RQI+  A+ KLR     H V
Sbjct:    3 NHELLNRNEEIVLAREIQILMKWEAVREQLETDLLRPPTYQEWANQIEPGMTVADLKKQIRRSLRAKAALTESNIRLVVSIAKKY------GRRGLSFQDLAQEGILGLTRACEKFDPERGFRFSTYASWWIKQGIMRAIADHGRMIRLPVHIHDQMNAVRKLEREMTVELGRAPTPKEVAEKSNLTLEKIEFLNRVTQ-ESISINEEVRSSKTKGSSAG--LGGTGLSLEDIMGDPESQPVEQATYQMLKDDISRLICTLNSREQAVIRMRFGLDDGKCKTLDEIGRKFSVTRERIRQIEARALHKLRQPYRNHAV 310          
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: B8C130_THAPS (RNA polymerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C130_THAPS)

HSP 1 Score: 186 bits (471), Expect = 8.620e-50
Identity = 115/315 (36.51%), Postives = 180/315 (57.14%), Query Frame = 0
Query:  173 NPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEV 487
            N  LL K EEI L R++Q L++WE V+  LE +L R  T +EWA  +        ++++++    A+  +   NLRLV+ IA++  Y G      ++++D+ Q+GT GL +A E+FDPE+GFRFSTYATWW+ Q I    AD  R IRLP+++H  +  V + +  + ++LGR  T +E++ + G++  K+ + L+   V  IS++           F        I DTL  + + +PV  A   +L+ DV  ++  L+ARE  V+RMRFG+      TL  +G++  VTRER+RQI+  A+ KLR     H V
Sbjct:   12 NHDLLQKNEEIILAREIQILIKWEEVREELEGQLLRPPTYQEWANAIEPGMTVTQIKKQIRRSLRAKAALTESNLRLVISIAKR--YQGRG----LNMQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQGIMRAIADQARTIRLPVHIHDQLSIVRKAERDLQNELGRDATKEEVAAKVGMKPDKI-EFLKRASVGSISMEQELGTSGSERSF-------TIQDTL-GDPDQKPVDMAQYRMLQDDVGRLICTLNAREQAVIRMRFGLDDGKAKTLEEIGKKFSVTRERIRQIEARALHKLRQPYRNHTV 311          
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A7S2KJI8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJI8_9STRA)

HSP 1 Score: 187 bits (474), Expect = 3.720e-49
Identity = 120/318 (37.74%), Postives = 179/318 (56.29%), Query Frame = 0
Query:  173 NPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFD---KPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEV 487
            N  LL + EE+ L R +Q L++WE V+  LE +L R  T  EWA+  A      G++R+++  + A+  +I  NLRLV+ IA++    G      ++ +D+ Q+GT GL +A E+FDPE+GFRFSTYATWW+ Q I    AD  R IRLP+++H  +  V R+   + + LGR PT +E++ ++ +  +K+   LR  +   IS++       G           +N++ +  L  +  P PV  A   +LK DV  +L  LS RE  V+RMRFG+      TL  +GRR  VTRER+RQI+  A+ KLR     H V
Sbjct:   99 NHDLLRREEEVILARHIQILIKWEEVREELESKLIRPPTYAEWAV--AVNLDVPGLKRQIRRSQRAKAALIESNLRLVVSIAKRYVNRG------MNFQDLCQEGTLGLTRATEKFDPERGFRFSTYATWWIKQGIMRAIADQSREIRLPVHVHDQLNGVRRVTKELSELLGRDPTDEEIAEKAKITVQKLT-FLRKAQQGTISIETPMNMGAGKGSSSGGGSMGQNDKTMGDLLRDSGPAPVDLASNEMLKDDVSRMLCTLSPREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIEARALHKLRQPYRNHSV 407          
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A1Z5JWI1_FISSO (RNA polymerase primary sigma factor n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JWI1_FISSO)

HSP 1 Score: 187 bits (476), Expect = 5.040e-49
Identity = 115/318 (36.16%), Postives = 180/318 (56.60%), Query Frame = 0
Query:  173 NPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVR---PKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEV 487
            N  LL + EEI L R++Q L++WE V+  LE  L R  T +EWA ++        ++++++    A+  +   N+RLV+ IA++       G   +S +D+ Q+G  GL +A E+FDPE+GFRFSTYA+WW+ Q I    AD GR+IRLP+++H  +  V +L+  M  +LGR PT +E++ +S L  +K+    RV + E IS+D      K +               ++ +  + E +PV  A   +LK D+  ++  L++RE  V+RMRFG+      TL  +GR+  VTRER+RQI+  A+ KLR     H V
Sbjct:  138 NHELLNRNEEIVLAREIQILMKWEAVREQLETDLLRPPTYQEWANQIELGMTVADLKKQIRRSLRAKAALTESNIRLVVSIAKRY------GRRGLSFQDLAQEGILGLTRACEKFDPERGFRFSTYASWWIKQGIMRAIADHGRMIRLPVHIHDQMNAVRKLEREMTVELGRAPTAKEVAEKSNLTLEKIEFLNRVTQ-ESISMDEELRTSKSKGSSAGLGGAGGRGITLEEIMGDPESQPVEEATYQMLKDDISRLICTLNSREQAVIRMRFGLDDGKCKTLDEIGRKFSVTRERIRQIEARALHKLRQPYRNHAV 448          
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A6P1AB60_9CYAN (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Kamptonema sp. SIO1D9 TaxID=2607808 RepID=A0A6P1AB60_9CYAN)

HSP 1 Score: 183 bits (465), Expect = 6.140e-49
Identity = 114/313 (36.42%), Postives = 187/313 (59.74%), Query Frame = 0
Query:  169 DLGRNPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGR 481
            ++GR P LLT  +EI   +++Q L+  E +K  L  +L +  T+++WA E A +  AE + +++     A+ +M+  NLRLV+ +A+K           + L D+IQ+GT G+ + VE+FDP KG+RFSTYA WW+ QAI    A+  R IRLP+++   + K+ + Q  +  +LGR  T+ EL+ E  LE K+V + L   + +P+SLD+R              ++ ++ D L  + +  P   A  +LL+ D++ ++ DL+ ++  VL++RFG+G   P TLA +G RL+++RERVRQI+  A+ KLR R
Sbjct:   17 EIGRVP-LLTHEQEIHYAKRIQRLVALEEIKEKLAKKLSKEPTLKQWA-EAAELTEAE-LRKQIAAAETAKRKMVEANLRLVVSVAKKYI------KRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQELGRAATIAELAAELDLEPKQVREFLEQGR-QPLSLDLRVGDN----------QDTELGDLLEDDGQ-SPEDYATQSLLQLDLEKLMADLTPQQREVLKLRFGLGNELPLTLAKIGDRLNISRERVRQIEREALTKLRKR 308          
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A7C3TCQ9_9BACT (RNA polymerase sigma factor n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C3TCQ9_9BACT)

HSP 1 Score: 181 bits (460), Expect = 6.710e-49
Identity = 117/280 (41.79%), Postives = 165/280 (58.93%), Query Frame = 0
Query:  202 LELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTD-VDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRG 480
            L  +L R  T EE   EL A   AE        M+ A+ R+   NLRLV+ IA+K    G      I+L D+IQ+G  GL++AVE+FDPEKG+RFSTYATWW+ +AI     + GR IR+P+ +  ++ K+++ Q+ +  QL R+PT+ EL+ E  +   +V + LR+   EP+SL+     ++          N Q+ D + S   P P   A VNL++ + +D +L  L+ RE  VL MRFG+    P TL  VG RLHVTRERVRQI+L A+KKLR 
Sbjct:    1 LRQQLRREPTEEELVRELGASRFAE--------MKRAKDRLTEANLRLVVSIAKKYSVRG------IALPDLIQEGNIGLIRAVEKFDPEKGYRFSTYATWWIRRAIARAIINQGRTIRIPVYVAEIIHKLVKAQSRLKQQLHREPTVDELARELEVSVDRVNEILRIAN-EPLSLETPVGEKE----------NSQLGDFIESETSPSPS-DATVNLIRREQIDEVLSRLTPRERDVLMMRFGLEDGYPRTLEEVGSRLHVTRERVRQIELRALKKLRS 254          
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: UPI0016891ABA (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Alkalinema sp. FACHB-956 TaxID=2692768 RepID=UPI0016891ABA)

HSP 1 Score: 183 bits (465), Expect = 6.840e-49
Identity = 125/323 (38.70%), Postives = 185/323 (57.28%), Query Frame = 0
Query:  169 DLGRNPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLR-GRSPTHEVLYS 490
            D+GR P LLT+ EEI+ G++VQ+ + ++ VKA L  RLG   ++EEWA EL      + +E  ++    A+ RM+  NLRLV++IA++  Y   +    + L D+IQ+G  GL   VE+FDP++GF+FSTYA WW+ QAI    +   R IRLP++L   + K+ R Q  +  +LGR  TL E++ E  LE +KV++ L   K  P+SLD++    +          +  +VD L  +    P V  +   L  D+ + +G+L      +L MRFG+ GN   +L+  GRRL ++RERVRQIQ  A K LR G S     L S
Sbjct:   21 DIGRVP-LLTREEEIQYGQQVQKRVEYQAVKAALAARLGHDPSLEEWAAELELT--VDELEAVVEAGEFAKRRMVEANLRLVVNIAKQ--YQNRN----VDLLDLIQEGALGLQMGVEKFDPDRGFKFSTYAYWWIRQAITRAISQSSRTIRLPIHLVEALNKIKRSQRELSQKLGRTATLNEIATELDLEPEKVLQYLSYAK-RPMSLDMKVGDNE----------DTDLVDILE-DESTSPAVHLEKVALSQDLQSAIGELPPIMQEILVMRFGLDGNEALSLSEAGRRLGMSRERVRQIQQKAYKLLRQGHSEIRHYLAS 322          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6L8_9PHAE1.510e-22857.29RNA_pol_sigma70 domain-containing protein n=2 Tax=... [more]
A0A836CM85_9STRA1.160e-5440.13RNA polymerase sigma-70 factor n=1 Tax=Tribonema m... [more]
A0A7S1B782_9STRA1.510e-5338.41Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A1Z5JFS9_FISSO6.210e-5036.91RNA polymerase primary sigma factor n=1 Tax=Fistul... [more]
B8C130_THAPS8.620e-5036.51RNA polymerase (Fragment) n=1 Tax=Thalassiosira ps... [more]
A0A7S2KJI8_9STRA3.720e-4937.74Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1Z5JWI1_FISSO5.040e-4936.16RNA polymerase primary sigma factor n=1 Tax=Fistul... [more]
A0A6P1AB60_9CYAN6.140e-4936.42RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
A0A7C3TCQ9_9BACT6.710e-4941.79RNA polymerase sigma factor n=1 Tax=Armatimonadete... [more]
UPI0016891ABA6.840e-4938.70RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 296..304
score: 78.71
coord: 431..443
score: 52.41
coord: 452..467
score: 51.37
coord: 467..478
score: 49.89
coord: 272..285
score: 53.96
IPR000943RNA polymerase sigma-70PROSITEPS00715SIGMA70_1coord: 272..285
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 428..479
e-value: 2.9E-12
score: 45.9
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 321..390
e-value: 5.5E-8
score: 35.1
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 415..492
e-value: 2.3E-21
score: 77.3
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 242..308
e-value: 3.8E-15
score: 55.4
NoneNo IPR availableGENE3D1.10.601.10RNA Polymerase Primary Sigma Factorcoord: 53..320
e-value: 1.2E-31
score: 112.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 601..664
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..84
NoneNo IPR availablePANTHERPTHR30603:SF45RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTICcoord: 139..482
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 139..482
NoneNo IPR availableCDDcd06171Sigma70_r4coord: 421..479
e-value: 4.64009E-7
score: 45.173
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 238..479
e-value: 2.8E-21
score: 73.8
IPR007624RNA polymerase sigma-70 region 3PFAMPF04539Sigma70_r3coord: 331..381
e-value: 1.0E-5
score: 25.6
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 396..482
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 316..368
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 174..317

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig65contigP-littoralis_Contig65:155642..165975 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig65.41.1mRNA_P-littoralis_Contig65.41.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig65 155089..167045 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig65.41.1 ID=prot_P-littoralis_Contig65.41.1|Name=mRNA_P-littoralis_Contig65.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=665bp
MRLRNAAVVLSVTATSAQAGSAEWTRRRGGGGSSNTPAFAPGGAGGGRTG
LGLSTQQSQLQQLKANSNLRRRSRPKPQYLSMQLKELSPSLASASAEESA
DYKRRSVIRVLFRDKNATEVTGWMKTLKNLDGPEMPFDEMLELKSEMDRS
MKANKESTERRSRRYKHFDLGRNPTLLTKTEEIELGRKVQELLRWERVKA
HLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLV
LHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYA
TWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQ
ELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIV
DTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSP
STLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEVLYSDRAVAREKDP
AAVQACGWDDGDCDGHDDDDDRHYGGLPPAVLIGLVKQALEPHPAAAGEE
EEGEEMRDARGNVVTGARRRLMGEAIQAERARAAAAAAAAAAAAAGSHAD
EKEAASPVKGKKKKRDFVMKRARSPDGCGGGGGGMEVGIVASGHPTEPPP
VTPNLAWQPSLQAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000943RNA_pol_sigma70
IPR007630RNA_pol_sigma70_r4
IPR036388WH-like_DNA-bd_sf
IPR007627RNA_pol_sigma70_r2
IPR014284RNA_pol_sigma-70_dom
IPR007624RNA_pol_sigma70_r3
IPR013324RNA_pol_sigma_r3/r4-like
IPR013325RNA_pol_sigma_r2