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Homology
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A6H5L6L8_9PHAE (RNA_pol_sigma70 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6L8_9PHAE) HSP 1 Score: 656 bits (1692), Expect = 2.470e-221 Identity = 389/679 (57.29%), Postives = 458/679 (67.45%), Query Frame = 3
Query: 306 LRNAAVVLSVTATSAQAGSAEWTRRRXXXXXXNTPAFAPGGAXXXRTGLGLSTQQXXXXXXXXXXXXXXXXXXXXQY--LSMQLKELSPSLASASAEESADYKRRSVIRVLFRDKNATEVTGWMKTLKNLDGPEMPFDEMLELKSEMDRSMKANKESTERRSRRYKHFDLGRNPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEVLYSDRAVAR---EKDPAAVQAC------------GWDDGDCDGHDDDDDRHYGGLPPAVLIGLVKQALEPHPAAAGEEEEGEEMRDARGNVVTGARRRLMGEAIQAERARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVMKRARSPDGCXXXXXGMEVGIVASGHPTEPPPVTPNLAWQPSLQAA 2291
L AA VLSV ATSAQAGS EWTRRR + AF GGA G+G+ Q LSMQL L ES +YKRRSV R +F + + EV+GWMKT K+LDGPEMPFDEM ++ D ++A+KES E+ R+Y+HFDL RNP LLTK EEIELGRKVQELLRWERV+ LE+RLGR ATMEEWA ELA M G EG+ERE+ +M+AAR RMISCNLRLV+HIA++KFY G+SG+LK+SL+DMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQ IHCGFADCGRV+RLPM+LHTMVCKV+RLQTAM+DQLGRQPT+QELSLESGL+E+KV KCLRVN+VEPISLD K + GHL+F+ + E++ D+++S +E EPV GADV+LLKTDVDTILGDLS REA+VLRMRFGIGG+SPSTL VG+ L VTRERVRQIQ+AAI+KLRGRSP+H++LY+DRAV+ E+DPAA A GW D+R YGGLP +V I LV +ALEP +EM D G VVTG RRR+M EA QAERA FVMKRA SP G G + G + P P TP+ WQP+LQ A
Sbjct: 5 LHAAAAVLSVGATSAQAGSEEWTRRRGGSPTGDRFAFVGGGA-----GMGIRGGDGLLLTTPASAGISLRRRRSGQQHALSMQLNMLL-----YDDNESMEYKRRSVTRGIFGE-HEKEVSGWMKTFKSLDGPEMPFDEMCDMMDRGDSLLRASKESREKNMRKYRHFDLRRNPELLTKIEEIELGRKVQELLRWERVRMFLEMRLGRAATMEEWAAELATMGGVEGLEREIGIMKAARDRMISCNLRLVVHIAKRKFYKGASGTLKVSLDDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQGIHCGFADCGRVVRLPMSLHTMVCKVMRLQTAMVDQLGRQPTVQELSLESGLDERKVEKCLRVNQVEPISLDGYRKGKSGHLNFENSFRRERVGDSVKSVQETEPVDGADVSLLKTDVDTILGDLSEREAYVLRMRFGIGGSSPSTLETVGQELQVTRERVRQIQIAAIQKLRGRSPSHDLLYADRAVSLGRGEEDPAAAVAXXXXXXXAATANEGW-----------DERKYGGLPRSVFIDLVTRALEPPQ---------DEMLDKEGRVVTGGRRRVMMEAAQAERA--------------------------LVPKKLKKGFVMKRACSPRRRGRDGEGAP-GRGSGGGASLPVPRTPS--WQPTLQVA 623
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A836CM85_9STRA (RNA polymerase sigma-70 factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM85_9STRA) HSP 1 Score: 202 bits (513), Expect = 4.940e-53 Identity = 128/319 (40.13%), Postives = 181/319 (56.74%), Query Frame = 3
Query: 792 YKHFDLGRNPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGA---EGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGI-GGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLR 1736
Y HF P LLTK EE+ L R VQ ++WE V+ L G+ T+ EWA+ + G E +++ +A+ MIS NLRLVL +ARK + S GS + L D++Q+G GLVKAVE++DPE+GFRFSTYATWW+ Q I D GR IRLP ++H + V R+ ++ ++LGR + +EL+ GL +K+ EPISL ++P G L DK + D++ P P + ++ DVD +L L+ RE VLRMR+G+ G TL +G + VTRERVRQI+ A+ +LR
Sbjct: 86 YVHFRQA--PELLTKEEEVSLARLVQRRIQWEAVRNRLASEFGKEPTLSEWAVAVGFRGGYPLDEEFSQQVAEGDSAKAAMISANLRLVLSLARK--HKASQGSRCLPLSDLVQEGILGLVKAVEKYDPERGFRFSTYATWWIRQTIARAVCDIGRTIRLPAHIHDSLRSVQRVGRSLSEELGRTASEEELAQRLGLTVEKLRWLHSCKYSEPISLSLQPGNGSG-LRPDKQSLTSTVGDSVHDTN-PTPEEYHNTMAIREDVDNLLSILTPREQTVLRMRYGLDSGGISETLEAIGVSIGVTRERVRQIERRALDRLR 398
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A7S1B782_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA) HSP 1 Score: 201 bits (511), Expect = 6.350e-52 Identity = 121/315 (38.41%), Postives = 186/315 (59.05%), Query Frame = 3
Query: 816 NPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEV 1760
N LLT EE+ L R VQ LL+WE V+ LE+ L R T EWA + + ++R+++ + A+ MI NLRLV+ IA++ Y + +L S++D+ Q+G+ GLVKAVE+FDPE+GFRFSTYATWW+ Q++ AD R IRLP+++H + V + + + +LGRQPT +E++ +G+ K+ + L + E +S + + I+ +++E P A ++L+K D+D +LG LS RE V+RMRFG+ TL +G+R VTRER+RQI+ A+ KLR H++
Sbjct: 183 NHDLLTAQEEVLLARHVQLLLKWEEVRERLEIELARPPTYAEWAAAVGV--DTKKLKRQIRRSQRAKAAMIESNLRLVISIAKR--YTSRTNTL--SVQDLCQEGSLGLVKAVEKFDPERGFRFSTYATWWIKQSVMRAIADQSRTIRLPVHIHDQLNTVRKHKRELTGKLGRQPTTEEIAEAAGITVDKL-QFLWKSSRETMSFEQEIRVGGAGXXXXXXXXXTVILSDSITDKEHMPEEKAALSLMKDDIDRLLGTLSVREQDVIRMRFGLDDGKAKTLEEIGKRFRVTRERIRQIEARALHKLRQPYRNHQI 490
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A1Z5JFS9_FISSO (RNA polymerase primary sigma factor n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFS9_FISSO) HSP 1 Score: 186 bits (472), Expect = 1.110e-48 Identity = 117/317 (36.91%), Postives = 182/317 (57.41%), Query Frame = 3
Query: 816 NPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISL--DVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEV 1760
N LL + EEI L R++Q L++WE V+ LE L R T +EWA ++ ++++++ A+ + N+RLV+ IA+K G +S +D+ Q+G GL +A E+FDPE+GFRFSTYA+WW+ Q I AD GR+IRLP+++H + V +L+ M +LGR PT +E++ +S L +K+ RV + E IS+ +VR + G ++ + + E +PV A +LK D+ ++ L++RE V+RMRFG+ TL +GR+ VTRER+RQI+ A+ KLR H V
Sbjct: 3 NHELLNRNEEIVLAREIQILMKWEAVREQLETDLLRPPTYQEWANQIEPGMTVADLKKQIRRSLRAKAALTESNIRLVVSIAKKY------GRRGLSFQDLAQEGILGLTRACEKFDPERGFRFSTYASWWIKQGIMRAIADHGRMIRLPVHIHDQMNAVRKLEREMTVELGRAPTPKEVAEKSNLTLEKIEFLNRVTQ-ESISINEEVRSSKTKGSSAG--LGGTGLSLEDIMGDPESQPVEQATYQMLKDDISRLICTLNSREQAVIRMRFGLDDGKCKTLDEIGRKFSVTRERIRQIEARALHKLRQPYRNHAV 310
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: B8C130_THAPS (RNA polymerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C130_THAPS) HSP 1 Score: 186 bits (471), Expect = 1.520e-48 Identity = 115/315 (36.51%), Postives = 180/315 (57.14%), Query Frame = 3
Query: 816 NPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEV 1760
N LL K EEI L R++Q L++WE V+ LE +L R T +EWA + ++++++ A+ + NLRLV+ IA++ Y G ++++D+ Q+GT GL +A E+FDPE+GFRFSTYATWW+ Q I AD R IRLP+++H + V + + + ++LGR T +E++ + G++ K+ + L+ V IS++ F I DTL + + +PV A +L+ DV ++ L+ARE V+RMRFG+ TL +G++ VTRER+RQI+ A+ KLR H V
Sbjct: 12 NHDLLQKNEEIILAREIQILIKWEEVREELEGQLLRPPTYQEWANAIEPGMTVTQIKKQIRRSLRAKAALTESNLRLVISIAKR--YQGRG----LNMQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQGIMRAIADQARTIRLPVHIHDQLSIVRKAERDLQNELGRDATKEEVAAKVGMKPDKI-EFLKRASVGSISMEQELGTSGSERSF-------TIQDTL-GDPDQKPVDMAQYRMLQDDVGRLICTLNAREQAVIRMRFGLDDGKAKTLEEIGKKFSVTRERIRQIEARALHKLRQPYRNHTV 311
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A7S2KJI8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJI8_9STRA) HSP 1 Score: 187 bits (474), Expect = 7.180e-48 Identity = 120/318 (37.74%), Postives = 179/318 (56.29%), Query Frame = 3
Query: 816 NPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFD---KPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEV 1760
N LL + EE+ L R +Q L++WE V+ LE +L R T EWA+ A G++R+++ + A+ +I NLRLV+ IA++ G ++ +D+ Q+GT GL +A E+FDPE+GFRFSTYATWW+ Q I AD R IRLP+++H + V R+ + + LGR PT +E++ ++ + +K+ LR + IS++ G +N++ + L + P PV A +LK DV +L LS RE V+RMRFG+ TL +GRR VTRER+RQI+ A+ KLR H V
Sbjct: 99 NHDLLRREEEVILARHIQILIKWEEVREELESKLIRPPTYAEWAV--AVNLDVPGLKRQIRRSQRAKAALIESNLRLVVSIAKRYVNRG------MNFQDLCQEGTLGLTRATEKFDPERGFRFSTYATWWIKQGIMRAIADQSREIRLPVHVHDQLNGVRRVTKELSELLGRDPTDEEIAEKAKITVQKLT-FLRKAQQGTISIETPMNMGAGKGSSSGGGSMGQNDKTMGDLLRDSGPAPVDLASNEMLKDDVSRMLCTLSPREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIEARALHKLRQPYRNHSV 407
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A7C3TCQ9_9BACT (RNA polymerase sigma factor n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C3TCQ9_9BACT) HSP 1 Score: 181 bits (460), Expect = 9.360e-48 Identity = 117/280 (41.79%), Postives = 165/280 (58.93%), Query Frame = 3
Query: 903 LELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTD-VDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRG 1739
L +L R T EE EL A AE M+ A+ R+ NLRLV+ IA+K G I+L D+IQ+G GL++AVE+FDPEKG+RFSTYATWW+ +AI + GR IR+P+ + ++ K+++ Q+ + QL R+PT+ EL+ E + +V + LR+ EP+SL+ ++ N Q+ D + S P P A VNL++ + +D +L L+ RE VL MRFG+ P TL VG RLHVTRERVRQI+L A+KKLR
Sbjct: 1 LRQQLRREPTEEELVRELGASRFAE--------MKRAKDRLTEANLRLVVSIAKKYSVRG------IALPDLIQEGNIGLIRAVEKFDPEKGYRFSTYATWWIRRAIARAIINQGRTIRIPVYVAEIIHKLVKAQSRLKQQLHREPTVDELARELEVSVDRVNEILRIAN-EPLSLETPVGEKE----------NSQLGDFIESETSPSPS-DATVNLIRREQIDEVLSRLTPRERDVLMMRFGLEDGYPRTLEEVGSRLHVTRERVRQIELRALKKLRS 254
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A6P1AB60_9CYAN (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Kamptonema sp. SIO1D9 TaxID=2607808 RepID=A0A6P1AB60_9CYAN) HSP 1 Score: 183 bits (465), Expect = 9.610e-48 Identity = 114/313 (36.42%), Postives = 187/313 (59.74%), Query Frame = 3
Query: 804 DLGRNPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGR 1742
++GR P LLT +EI +++Q L+ E +K L +L + T+++WA E A + AE + +++ A+ +M+ NLRLV+ +A+K + L D+IQ+GT G+ + VE+FDP KG+RFSTYA WW+ QAI A+ R IRLP+++ + K+ + Q + +LGR T+ EL+ E LE K+V + L + +P+SLD+R ++ ++ D L + + P A +LL+ D++ ++ DL+ ++ VL++RFG+G P TLA +G RL+++RERVRQI+ A+ KLR R
Sbjct: 17 EIGRVP-LLTHEQEIHYAKRIQRLVALEEIKEKLAKKLSKEPTLKQWA-EAAELTEAE-LRKQIAAAETAKRKMVEANLRLVVSVAKKYI------KRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQELGRAATIAELAAELDLEPKQVREFLEQGR-QPLSLDLRVGDN----------QDTELGDLLEDDGQ-SPEDYATQSLLQLDLEKLMADLTPQQREVLKLRFGLGNELPLTLAKIGDRLNISRERVRQIEREALTKLRKR 308
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A1Z5JWI1_FISSO (RNA polymerase primary sigma factor n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JWI1_FISSO) HSP 1 Score: 187 bits (476), Expect = 1.030e-47 Identity = 115/318 (36.16%), Postives = 180/318 (56.60%), Query Frame = 3
Query: 816 NPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVR---PKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEV 1760
N LL + EEI L R++Q L++WE V+ LE L R T +EWA ++ ++++++ A+ + N+RLV+ IA++ G +S +D+ Q+G GL +A E+FDPE+GFRFSTYA+WW+ Q I AD GR+IRLP+++H + V +L+ M +LGR PT +E++ +S L +K+ RV + E IS+D K + ++ + + E +PV A +LK D+ ++ L++RE V+RMRFG+ TL +GR+ VTRER+RQI+ A+ KLR H V
Sbjct: 138 NHELLNRNEEIVLAREIQILMKWEAVREQLETDLLRPPTYQEWANQIELGMTVADLKKQIRRSLRAKAALTESNIRLVVSIAKRY------GRRGLSFQDLAQEGILGLTRACEKFDPERGFRFSTYASWWIKQGIMRAIADHGRMIRLPVHIHDQMNAVRKLEREMTVELGRAPTAKEVAEKSNLTLEKIEFLNRVTQ-ESISMDEELRTSKSKGSSAGLGGAGGRGITLEEIMGDPESQPVEEATYQMLKDDISRLICTLNSREQAVIRMRFGLDDGKCKTLDEIGRKFSVTRERIRQIEARALHKLRQPYRNHAV 448
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: UPI0016891ABA (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Alkalinema sp. FACHB-956 TaxID=2692768 RepID=UPI0016891ABA) HSP 1 Score: 183 bits (465), Expect = 1.070e-47 Identity = 125/323 (38.70%), Postives = 185/323 (57.28%), Query Frame = 3
Query: 804 DLGRNPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLR-GRSPTHEVLYS 1769
D+GR P LLT+ EEI+ G++VQ+ + ++ VKA L RLG ++EEWA EL + +E ++ A+ RM+ NLRLV++IA++ Y + + L D+IQ+G GL VE+FDP++GF+FSTYA WW+ QAI + R IRLP++L + K+ R Q + +LGR TL E++ E LE +KV++ L K P+SLD++ + + +VD L + P V + L D+ + +G+L +L MRFG+ GN +L+ GRRL ++RERVRQIQ A K LR G S L S
Sbjct: 21 DIGRVP-LLTREEEIQYGQQVQKRVEYQAVKAALAARLGHDPSLEEWAAELELT--VDELEAVVEAGEFAKRRMVEANLRLVVNIAKQ--YQNRN----VDLLDLIQEGALGLQMGVEKFDPDRGFKFSTYAYWWIRQAITRAISQSSRTIRLPIHLVEALNKIKRSQRELSQKLGRTATLNEIATELDLEPEKVLQYLSYAK-RPMSLDMKVGDNE----------DTDLVDILE-DESTSPAVHLEKVALSQDLQSAIGELPPIMQEILVMRFGLDGNEALSLSEAGRRLGMSRERVRQIQQKAYKLLRQGHSEIRHYLAS 322
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Seed ortholog | 2880.D8LQM1 |
| PFAMs | Sigma70_r2,Sigma70_r3,Sigma70_r4 |
| Model size | 3364 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K03093 |
| Hectar predicted targeting category | signal peptide |
| GOs | GO:0000988,GO:0000990,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006091,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009553,GO:0009628,GO:0009637,GO:0009639,GO:0009651,GO:0009657,GO:0009658,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010114,GO:0010207,GO:0010218,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015979,GO:0016043,GO:0016070,GO:0016987,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019684,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032501,GO:0032502,GO:0032774,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048229,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0071214,GO:0071470,GO:0071472,GO:0071478,GO:0071482,GO:0071483,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0104004,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2000142,GO:2001141 |
| Exons | 8 |
| Evalue | 7.03e-230 |
| EggNOG OGs | COG0568@1|root,2QRMD@2759|Eukaryota |
| Ec32 ortholog description | RNA polymerase sigma-70 like domain |
| Ec32 ortholog | Ec-10_006180.1 |
| Description | Sigma-70, region 4 |
| Cds size | 1995 |
| COG category | K |
| BRITE | ko00000,ko03021 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680791353.9796813-UTR-P-littoralis_Contig65:155088..155150 | 1680791353.9796813-UTR-P-littoralis_Contig65:155088..155150 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig65 155089..155150 + |
| 1680791353.994906-UTR-P-littoralis_Contig65:155404..155641 | 1680791353.994906-UTR-P-littoralis_Contig65:155404..155641 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig65 155405..155641 + |
| 1680791354.1206813-UTR-P-littoralis_Contig65:165975..167045 | 1680791354.1206813-UTR-P-littoralis_Contig65:165975..167045 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig65 165976..167045 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680791354.0069375-CDS-P-littoralis_Contig65:155641..156154 | 1680791354.0069375-CDS-P-littoralis_Contig65:155641..156154 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig65 155642..156154 + |
| 1680791354.0388098-CDS-P-littoralis_Contig65:160350..160446 | 1680791354.0388098-CDS-P-littoralis_Contig65:160350..160446 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig65 160351..160446 + |
| 1680791354.054688-CDS-P-littoralis_Contig65:161248..161440 | 1680791354.054688-CDS-P-littoralis_Contig65:161248..161440 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig65 161249..161440 + |
| 1680791354.0678911-CDS-P-littoralis_Contig65:161974..162049 | 1680791354.0678911-CDS-P-littoralis_Contig65:161974..162049 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig65 161975..162049 + |
| 1680791354.07943-CDS-P-littoralis_Contig65:163083..163293 | 1680791354.07943-CDS-P-littoralis_Contig65:163083..163293 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig65 163084..163293 + |
| 1680791354.0898452-CDS-P-littoralis_Contig65:164512..164653 | 1680791354.0898452-CDS-P-littoralis_Contig65:164512..164653 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig65 164513..164653 + |
| 1680791354.1004746-CDS-P-littoralis_Contig65:165207..165975 | 1680791354.1004746-CDS-P-littoralis_Contig65:165207..165975 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig65 165208..165975 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig65.41.1 >prot_P-littoralis_Contig65.41.1 ID=prot_P-littoralis_Contig65.41.1|Name=mRNA_P-littoralis_Contig65.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=665bp
MRLRNAAVVLSVTATSAQAGSAEWTRRRGGGGSSNTPAFAPGGAGGGRTG
LGLSTQQSQLQQLKANSNLRRRSRPKPQYLSMQLKELSPSLASASAEESA
DYKRRSVIRVLFRDKNATEVTGWMKTLKNLDGPEMPFDEMLELKSEMDRS
MKANKESTERRSRRYKHFDLGRNPTLLTKTEEIELGRKVQELLRWERVKA
HLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLV
LHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYA
TWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQ
ELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIV
DTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSP
STLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEVLYSDRAVAREKDP
AAVQACGWDDGDCDGHDDDDDRHYGGLPPAVLIGLVKQALEPHPAAAGEE
EEGEEMRDARGNVVTGARRRLMGEAIQAERARAAAAAAAAAAAAAGSHAD
EKEAASPVKGKKKKRDFVMKRARSPDGCGGGGGGMEVGIVASGHPTEPPP
VTPNLAWQPSLQAA* back to topmRNA from alignment at P-littoralis_Contig65:155089..167045+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig65.41.1 ID=mRNA_P-littoralis_Contig65.41.1|Name=mRNA_P-littoralis_Contig65.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=11957bp|location=Sequence derived from alignment at P-littoralis_Contig65:155089..167045+ (Pylaiella littoralis U1_48)
CTTGCCTTTCTTCCCACCTTTTCCCTTGCTCAAGCCCTTTCCCCGGTTGC
CCATCGCTGAGGGTAAGGAGCCGTGTCTGTCTGTGTACCTATTTCTGTAG
CGATGAGACGGTCGAGGGTTCCTATGCTTCCCCTTATGCTCTGCTGGGGT
TCAGGTGTCCTGCTGTAAAGTAAGCCTGCCCCCGGCTGCTATGCTGTGTG
CTGCTATGACAGAAGTAAAGTACCGCTATTTGTTTCGGAGATTCTAGTTT
CCACAGTAATATACGTTCTGGTTTTCTGGCTTGTGTCCTCCGGTGTCCCC
TGTATGTATGTGTCAGTGTCAGGAGAGAAGATAAAAGGGGGAGATACAAC
AGCAGAGGGGAGACACACAGCAGTAAGAGCGAGTGCACCTTCCTCATTGC
CTGAGCGTGGGAAAGAACGAAAGGATAGCACCACGTGCATGTGTTCGAGG
GCCACCGTATCTAGCTTTGGTTGCACATCTGGCAACGTGAGCGGTCTTTT
TGCAACGAGTTAGATTCCGCGGAGTCAGGCCATCGAGCCACACTGCCTCG
GACATGCGCCTCAGGAATGCGGCGGTGGTACTCAGCGTCACCGCTACTTC
AGCCCAAGCAGGGAGTGCAGAATGGACCAGACGAAGAGGGGGGGGCGGAT
CGAGCAACACCCCGGCGTTTGCGCCAGGAGGAGCTGGAGGAGGAAGAACA
GGTCTCGGGTTGTCAACACAGCAGTCGCAGCTGCAGCAGTTGAAGGCAAA
TAGCAATCTACGACGACGTTCTCGACCCAAACCCCAGTACCTGTCGATGC
AGCTCAAAGAACTGTCCCCTTCCCTGGCCAGTGCGAGCGCCGAGGAGTCA
GCGGACTACAAGCGCCGGAGCGTCATCCGTGTGCTCTTCAGGGACAAGAA
CGCGACGGAGGTGACGGGGTGGATGAAGACGCTCAAGAACTTGGACGGGC
CGGAGATGCCGTTCGATGAGATGCTAGAGCTCAAGTCGGAGATGGACAGG
TCGATGAAAGCCAACAAGGAGAGCACGGAGAGGCGAAGCAGGAGATACAA
GCACTTCGACCTCGGGGTGAGTCGAGGCGCAGAGGAAGTTGCTGCGCTCG
GGTGACAGAGGGGAAGGCAGCACGTGTTGTTGTGCTGAGACGCTTGTGTG
TCTGCGTCCACTTGCTTGCATCCAGTGTATCATAGCGCGGATCCGAAACC
CTGCTGTCTGCGGCATATTTATTCAAACCCAATTCGAAGGGTTTAAAAAA
AAAAAGGTGTACTGCTGTTATAATGCAGCAGTTTCCTATTCCCTTCTTTG
TGTTCGAATCCTCGTCGGAGTGAAACGGACACACTGATGGGTTCGTAGAA
AAATAACGAAGTACAAGAAGTAACTTTTTTCTGTTTGGATTACGAGTACC
GTAAACTACACAAGATAACACACCCCCGGTGATACATTTGAGCGCTTGAA
AATATTATCACCGGGTGTGGTATTGTGGGGGGGTGTGGTATCTTGTGTAG
CCCCGGTGATAGAGTGCTGGTGGCGGCGGCCCCCAAGGGGTGTGATAAAC
CAGGGGGTGTGATAGCACGTCCGACCACCCACAGGGTACGTCTGGGGGTG
TGATAAACCAGGGGGTGTGATAGCACGTCCGAACACCCACAGGGTGTGTT
TGGGGGTGTGATAAACCAGGGGGTGTGATAACCTCCGAACACCCACAGGT
CGTGCTTGGGGGGGGATACCGAAACACTCCTCCCGTGTAGACTTGAGCCG
CTGCTGCCGGACACTTGAAGCGGTGTGGTATTGCGGGGGGTGATACCTGT
CCGAACGTCCGCACACACGTTAGGTTATTGCGGGGACAAAACTCCTGAGC
ACATTACCTCGACGATGACTGACCCCCCTCAAAGCCGAGAAAGCTCGAAA
AAAAAATGTCAGCTCTCTTGTCTTGATGGAGCATCAAAAAGTGGAAATTA
AATCGAAGATACCTCGCCCGATATGACGCGAGACGGCGCCACAGAGTACG
CCATCTGTCCTGCCCTCTTCAAAAACGTACCAGGCTGCTGCAACAAGCAC
GACCAAAAGTCCAAGACCACGAAACACAACAACGTTGCACTGTACGCGGC
TAAGAAAACAACGCTCGAGTTGAAAGAACGACGTGATTTGTGGCGCCTGC
TGTACTGCTGCGGTCGAAGCAGTTGTCGGAAAAGCGGGGGCACCAGAGGC
ATTCTGCTCTCCCTCAACGTTCATGTTCTTGGAGGTCTCCACACGGGGTG
TTCCCCCCGCACACAGGGTGTGGTGTTGTGTGCCCACGGGGCAGATGTTC
TATCACCCCGGTGGTAGAAAGGAGGGGCCCCGTGAATGTATGCGGCGTAA
GTAAAGTTATCACCGGGGGTGTGGTATCTTGTGTAGCCCCGGTGGTAAAT
CGATGGTTCCAAAAATGCGCCCAAAATTATCACCGGGGTGTCGTAATCTG
TGGGGGGTGTGGTATCTTATGTGGGTGTGTTATCTTGTGTATTTTACGGT
ATACAACTGGAACATCAGGAGCAAGCAGACAAATTTTTTCAGAGACAGCA
GTGCCGGTCTCTTCTTTTCGTCCTCTCCGCTCCTATCCTTTCATGCTCGT
GTTGTTGTTGTTGATTCTCACATTAGCTCACTACCGCCGCAGTCTAGCCC
GTGGTCACAAACCAGGCGCATATCATGCTAGGAGGAAAAAAAATAAAATA
AAATATACTCCGTATGGACTATTATCCCCCACAGTCAGATCAGATATGGT
ACCGTTGGGGTACCATCTGTGGTGGCCAGAGTGCCAAACAAAATGCATTA
AAAAAATAACAGACTCGAAAGAAAAACAAAAATTGGAAACAGTCCGACAA
ACAAAAAATAACCAAGACAAACCTCAACCATAGCCATATACTTCGAAGTA
CTTCGTACATCGAACCAGGGCCCAGGGCCATGACAGACCAAGGCAAAGGC
AAACCAGGGCGATGGTCCAGTAACTACCGGTATATGATCAATAGACGAAA
GACAAAAAAATATAAAAGAAGAAACAGGGAGGGCACAAAGACTGAGGGAG
TGCACTCGTACACAAACACAACAAACAGGCCGCCAAACAAAGAGGAAGCA
GGGGAACGAAAAGGGAAAAGAACAAAAGAGACAAAGAGGAATAAAATACA
TGCATGGAGAGTGCAGAGGGAAGACTGGAAGTGAGTACCGGAATTCCGGG
GGGGGGGGTAGGTGATAAAAATAAAATAAAAGGCATGCAATCAATCGCAA
ACATGTCTTGCCACGAGGTCTGCCTGTTCACGCTTACTCTCCTCAGTCGC
ACTCATGCCTCCTGCTACTGGCACCACCGTACCCAGCTGTTTCTGCCCCA
CATCTTTGGCAGCAGCTACACCACCATTCCGCCCTACAGGTTTTCCACTC
CGGCCACCCCGTAGCTTGGCTTTGGGCTGCTTCTTCTTGTGCTGTGCAAC
TCCAACCCCACTACCCCGCTGCCCTTGTGCCCCCCCCGTACCCCTCCTCT
CGTTTATCCCCGCCATCCGTTCTCCCTCTTTTGGCCAAGGCCTGCCCCTC
AGCCGCGTCCCTCTCCCTTTTCCGTCGACGTGTCTCTGATAAGTCTCCCT
CTTTCTTGAGCCACTCGTCCGTGAACCGCCGCGCACCCTCGTCGATCCTG
TCGTACCACTCGTCAGCTCTCTTGACACTTGCCTCCCACCCCTCTTTTTT
GTCGACAACGATGTCGAACGCTTCGAGGTCCTCCTGCTCGTGTGACATCA
TGTGATATGTAGTACCTGGTAGGTTTTTTATTTTTTGTAAGGTTTATTTA
GAACGCCGATCGATTTTCCCCTGTACTCGATCGAGCATTTTACTGCTGAA
GGTTTTCGATCGGCTGTTCTTACGGTGATCGTTTTTTCCCACCGTTTTTT
TCAGGACTGCAGCAAGACGCACCGGTAGCACCAGCAGCAAGAAGAGCATT
TTGTCTGCTGCGAGACCAGGTTATACTTCAGCTTGTAGTTCTCGAACGAA
CAAGGCCACAGCAATGTCAAAGCCATCCCCCGTGAGCTGTGTGTATATAG
TTCTTCTCATGTGATGATCGTCTGAGCCTTGAGGCTGGGGTAGGCTCGCA
ACAAGGTTGGTTGTTGATGTGCTGTTTGTCGAGCACACCCGAAATACAGT
ACACGAGGGAGTTGTTGTTGCTCCGCGTAGCGCCGAGGAGGCATTTTTCG
CCTCTGGCACGGTTGGCGTTCTCACTCACCACTCCCGAACGGATGCAGCC
ACAGCAACGCCAAAGGCATCTGCCGTGAGCTATGTGTATGGTCCTTGTCG
TCTGGTGATCATGTCGGTAAGGGTTACATCGGTACGTCGGCAAAAAAACA
GTTTGCTTGTCTCAAACCACTCGTGGAAACTTGAAAATTCTCCTATCGGA
CAGTGCTGCCGCGCAACAGAACCTTCCTCTCTTGTTTGCGAGCCTACCGA
TGCCTCGCTGACCGAAACAATCATCACACGAGAGGGATCACACTCAAAGC
TCACGGCAGATGCCCTTGTCAAAGCTGCCGCTGTATTCGTTCGAGGGTAG
TAGTGGTGGATGAAACAGTAAACCGGTGCCAGGGGAAAAGGATCTGCTGG
GCGGAGCCATGTAATAATGTGAGGGCACGCAGAAAACAAACAGACACCTG
TTTCCACTCTGTTTTTTACATGAGCCGCATGGTCATATGCGACGGTATTG
CACATGGCATTCCGAAATAAAATAGAAAAATACTGATACAAAATACTCCG
AAGTACAAAATACCTCCAAAAAACAATACACAGCTGCATTCTCCCGAGGC
TCCAAATACGAGTCTGGTTCCGAGTGTGAAGACACCGGCGACCACATACG
CACCCGCCAACCAAATGTTGCACGTAAAATCCCGACGTGCCCAACCCCCC
CCACTTTCTCCCTCCTGGTACTGATGTACCGCTGGTGACATGACGTTAGA
TACCACACCCCATGGACTGCTTTTGAAAGCTTGGTTGCTCACTCCACAGC
AGGACGAGTGTCAGTACCGATAACTGTGGCGTTATACAGATAACGAAGCG
TTATACAGGTCTTGTCAAGAGCTACTCGAAAACACATCGTTTGGTGTTGG
CGCCCTGTCCGTTACGGATTAATCGACCTATCGTTGAAAAATAGCTAGGG
TGTGTGGTACCTTTGTCACCTATGGTAATGTATGTGAGACTGACCGCTGT
CTTCCGCGTGTCTGTCTGCAATGTGTACGTTCTTCCTTTCCTCTGTCGCG
CTGCCCTTCCAGCGTAACCCGACCCTCCTCACCAAAACGGAAGAGATTGA
GCTCGGGAGAAAGGTGCAAGAGCTTCTACGGTGGGAGCGCGTAAAAGCTC
ACCTCGAGGTGAGCTTTTTTTATGTGTTCGTTCTCACCATGAGCTTGTCA
GACAGAAATCCTCAACTAGAGGGGGGGGCGGCGGCACTTGAAGCCGCTGG
GGGGGTTAATGGAGGGGGGGGAGGGTCGTGTTGTTTAGGCCACTTTCAAT
ACTTTTACGTATCTGCACCTGGTGCTTCTGTGGTGCTACCTTGTGCTATC
TTGTGTGAGCCTTGTGCTACAAGACATACACTGATTCTTTGTTCCAAACT
CGGAGATGTACAATACTGAGATGTGATGTGATCTAGGTGTGACTTGATGG
TAGGCCGACCTCGAGAATAAAGCGTTCGTGTATGATACTTTCCCCCTTGA
CGTCCCTCTGCCGTTTGCGAGGTACCATTCGTAGACGATTTATAATACAT
TCTCCGTTGTTTTCTTCTTCATGCCGTCGAGCAGAACAAGTCATGAGCGG
CCTTGTCACGCCACAACGACTGCTGTCAGACAGACATGTATATCTACTTT
CGATGTATCGTTTTTCCTTTTACTGGTGCGGGAAATACCTGTCGCATCTC
GCCCTTGCCGGAACCAACCGTAAAGTTTTGTCCTGTAAACACTCACGGCC
GAGCAGAGCCGCCGCAAAGACAGCTGTCTGGGGGTGGTGCTGAGCTGAGC
TTTCCAACAACCTCGGGTTTTCGAAACCCACTTCCAAGCACTACAGCAGT
ATCGTCAATATGCGATACCAGTGTTAAATTCTACCCCTTATCCCCGTCAT
TCAGCCCTTCCTCCTCGCTGAAACCCCTTTGTTATTTTTTTTTCTCCCGA
TCTGCAAAAGCTACGGTTGGGGAGAACAGCGACGATGGAGGAGTGGGCGA
TAGAGCTGGCTGCCATGGACGGGGCCGAGGGAGTGGAGAGGGAAATGAAG
GTCATGAGAGCGGCCAGAACGAGGATGATCTCGTGCAATCTTCGCCTGGT
TTTGCACATCGCTAGGAAGAAGTTTTATATGGGATCGTCAGGCAGCCTTA
AGGTATGCATACATACATACATACATACACAAAAACAACCGCGTTCATGA
AATACACGCGGTTGTTGTTGCTGTTGCTGCTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTCGATGTTGTTGTCGTTGGTGTTGTCGTTGCT
GAATTTCCGGTGATGATGGCGAAAATGATGGTTTTGATGTTGGCGCTGAC
TTGACTGTTGTCGTTATTGTTGTAATGTGCATAGTGAGGTGGATCCACGG
CGGCCTCTGTCGCCGCTCCACTTTTTTCTCGTTTCTGTTCCGATTTTTGC
ACCCGAGTACCCCCCCCCGCATCTTCCGCCGCACTGGTCAAACCGGCACG
AGGCGACTCCTCTTTTGGTACTTTCGTGGTGGCGACAGACCGATTGGCAC
AACAAAAAGAGGTTCGAAACATGTTTGTATGTATGCTTGTACGTATGATA
TGTACTCAGGTTTGAAGATCATGTTTTTGACGTTTTGCATCGCTTGTGCA
GTAAATTAACGCCATGACATGATAACCATGTACCAGATTAGTCTGGAGGA
CATGATCCAAGACGGCACGGCCGGGCTTGTGAAGGCCGTGGAGAGGTTCG
ACCCTGAGAAGGTGAGACTTGCGCTTCCGAGGAAACTTCCGAGAAAGCTT
CCCTTTTATGGTGTGCGGGAAGAGAGACTATTCGGGGCTTTTGGTGTATG
ATAGCGCAGGAGAGAGAGGGGAAACGCCTGGAGAGTTGTTTGCGAATCCG
GAAGCGGAGATTTTTTTTTTATATTTTCTTCTTTCTTTTGAGGGCAGGTA
ATTACTGGAGGGTGATTCTTATTTTTTCCAAAATGACAAAAAAAAAAAAA
AATGATGGGAATAATAGAATCCCGAAGTTCATTCGAAGGTAATGAATGAT
CTCGCCGTGTGGTGATACCAAACGTGTGTGTTGTAGGGCTCGCACCCGAC
TCCAAAAGTTGCCAAAAGTTGGAACTGGGTACCCGGAAGGGCTGCTCGGT
TCCGGGTACCCGAGGTCGGGTACCCGTCGGGTACTCGGGTAGGAGCAAGT
CGGGTGCGATACTAAGGGTCGCACCCGACTCAAAAAATTGGAATCGGGTA
CCCGGTGGGAATACTCGGTTCCGGGTACCCGAGGCCGGGTACCCCGGTAG
GAGCAAGTCGGGTGCGAGCCCCAGTGTGTTGAAGGGCTTGCCAACGCGAC
CATGGTCAAGTGTCATTCGAGGTGGGTCTGGGCTGTACCATACTACCCTC
ACAGAAACATTTGCATGTGTTTGGGAGACTGAATGAAATGAACGAGAATC
ATGCTATAGTAGTATTGGATGGTTGTGGGATTCTGTGGGATGGTACAGCA
GTACATGATGTACCAGCGGTACAGCAGTACATGATGTACCAGCGGTACAG
CAGTACATGATGTACCAGCGGAGGCTTGCAGTTTCAGTCCACGCAGCCGC
TAGTCGGACTCTCTTGCGAGATGACGCAGAAGCTCTTTCTTCACCGTGCC
TTGAATTCTTCCCCCGTCTCTCTCTCTCTCTCTCTCCCCCTCTGATTTAT
CTTTCGTTCTTCGTGTCTGACCCTCGCCATTTGCCCGTTTCGTTTTTGTC
TTGTCGTGGCCTGTTCTTGTGGAACACAAAAAACAAAACAAACAGGGGTT
TCGTTTCAGCACGTACGCGACGTGGTGGGTGCACCAGGCCATCCACTGCG
GCTTCGCGGACTGCGGGAGAGTGATACGGCTGCCGATGAACCTGCACACG
ATGGTGTGCAAGGTGATCAGGCTGCAGACGGCCATGATGGACCAGCTGGG
GAGGCAGCCCACCTTGCAGGAGCTGTCGTTGGAGAGCGGCCTTGAAGAGA
AGAAGGTGTGACGTGCCATCGTGTGACATGCGGTGTGACTTTTTTCCGAA
AGGTCGGAAGGCGTCATGCGGTATGACATTTCCCAGAATGCGGCGTAATT
TCGGGTTGCGGCGGTGCGGCGGGGGGTATGGCCGGTGTTTATCTGTGTGA
CGCTTCCGTTGATCATTTCTTCTCACTTTTCTGTCTCGTGAGCTCGCGTC
CTCAGGCGCTTGGTACTGCTGCTGTAGCGTTGCGGTGAAGTCGATCCAAC
GTGGTCAGGAACATACATGTTGTTGTTGATTCTCACATTAGCTCACTACC
GCCGCAGTCTAGCCCGTGGTCACAAACCAGTCACATATCGTGCTAGGAGG
AAAAAAATAAAATAAAATAAATGGACTATGATCACCCACAGTCATATCAG
ATATGGTACCGTTGGGGTACCATCTGTGGTGGCCAAAGTACCAAACGAAA
TACAGAAAAAAAATAAGAGGCTCGAAAGAAAAAACAAAAATTGGAAACGT
ACGACAAACAAAAAATAACCAAGACAAACCTCAACCATAACCATATACTT
CGAAGTACTTCGTACATACCTCTGTGTGAAGACGGTGGAGTATGATCGGC
CGGGCGGCTCAAGAGCGCTTGAACACTTCGAAACCCTGAGTAATATCTCC
GATCTATCTGCATTCTCACGTGCATTTTTCCAAAAAAGGGGTAGACGGTC
CGCCTCTTAAATGTAGTGTTCGTTCCATGGTGGTTTCTTGTAGTTTGAGT
CCCGTTTTGTACGATAGGCCAGCCAACACTGTTTCTCAGCAATCTCGCTC
ACTACTGCTGCTGTGTGCTGGTAATCGAAGTTCGGCACAATATTCCCTTC
CGGATCATCAAATAGGTGGGTTTTGATACAACAAGTGTGTTTTGTGGGTG
AAATAGTGACGATTTCTCGCTAGAAAAAGAGAAAAAAAGGACTCCTTCGT
CGGCCTTCCTCGTGTGTGACCCTGCCTGGCGCCCCGCCAGATTCATACCG
AAAGCTGTGGACTGGGGACCGGAACAAATGGGATGGCAACGCGCACAAAC
ATACACATACTCGCATGCACACACAAATCGCTGACCGCGAGGCGTTTCCC
ATCTCCAATCTCTCGCGCGGTTCGCTTCGTTTCTATTTCGGTTTCGCGCA
TCTGAAAAATGAAAAAAAATGAAAAAAACTTCGCTGTTGTCATCGTCCGC
CCGCAATCGATCCCACCAACCAAGGTCGTGAAATGCCTCCGCGTGAACAA
GGTGGAGCCTATCTCTCTGGATGTCCGTCCGAAGCGGAGGGACGGCCATC
TCCACTTCGACAAGCCGCGCAAGAACGAGCAGATCGTAGACACCCTTCGA
TCTAATCGCGAACCGGTGCGGTGGAACGTTTCGGGAACTTTCATAGTCAA
AATCGATGCAGCGGCACGTGGATATATGATGCTGTGCATCGTATAATATG
CAACTTTTCTTGCGTTCCTTGTGTAAGGAGACGTTCGAATCAAATTGATT
TGTCACGACTTGTGCTTCTCCAAAAATAGACGGAATTGTGTCCCTCGTCT
AGCACTCGATCTGGATAAAACAAGGGATGGCACGTGAAGTGGTTGGGTTA
CACGGGGGCAAGTTCAGAGTAGCAAGGTGGCGATGAACGTTGTATCTCAC
TTCGACCTGAAGTTGTCGTACGGTAACGCTCTCCTAACATGAAAAAATGA
ATAACTTCATGTCCGGCCTCGAACGCGTTCTGTAACCGCAACTAATGTGA
ATGAAGTATCTTCCCTAACGAGCACACGCGAATTATTTTGTTGAGCCCAA
CAACAACAGCTGACGACATTTCTCTTCTCTACGCCACCACGCCTCTTTTT
CCTCTCTACGCACACCGTTCCAAATCAAACATCCTGCCGTTTGTCCCAAA
AAAACAAACAAAAAAACAGGAACCTGTCGTCGGCGCGGACGTGAACCTGC
TCAAGACAGACGTCGACACCATCCTCGGCGATTTGTCCGCCAGAGAGGCC
TTCGTCCTCCGGATGCGCTTCGGCATCGGCGGCAACAGCCCCTCCACCCT
CGCCGTGGTGGGGCGACGGCTGCACGTCACCCGCGAGCGCGTCAGACAGA
TCCAGCTCGCCGCGATAAAGAAGCTCAGGGGCAGGTCGCCCACCCACGAG
GTCCTCTACTCGGACAGAGCGGTCGCCAGAGAGAAGGACCCGGCCGCGGT
GCAGGCGTGCGGGTGGGACGACGGCGACTGCGACGGCCACGACGACGACG
ACGACCGCCATTACGGCGGGTTGCCACCAGCGGTGCTGATCGGCCTGGTA
AAGCAAGCCCTGGAGCCGCACCCGGCCGCCGCGGGGGAAGAGGAGGAGGG
CGAGGAGATGCGGGACGCTCGGGGGAACGTTGTCACCGGCGCGCGGCGGC
GGCTCATGGGGGAAGCGATTCAGGCTGAGCGGGCGAGGGCAGCGGCGGCG
GCGGCAGCGGCGGCGGCGGCAGCGGCGGGCTCGCACGCGGATGAAAAAGA
AGCAGCGTCCCCCGTCAAAGGGAAAAAGAAGAAGAGGGATTTCGTCATGA
AGAGGGCGCGCAGTCCGGACGGGTGCGGCGGCGGCGGCGGCGGCATGGAG
GTAGGGATTGTCGCGAGCGGGCATCCAACGGAGCCCCCGCCAGTGACGCC
AAACCTCGCGTGGCAGCCGTCTCTGCAGGCGGCATAGCATATATTGAGCG
CCTTTTTTGTTGTTGTGTCGAATTCGTTGAGCCGAAAAAGTGCAGACACG
GGAGGGAGGGGCGCCGTGCGCGAAACGGAGGGCAGGCCCAACCCGAATCG
TGTTTGTTTTGTGGGTGTCCGCGAGTGCGCCTTTGAGTGTTTCGCGTGTG
CGGTTTTTGTGCCATGTATCATATATTGACTGTTTCATGTCGATTCCCTA
CCTGACGGTTGTTGGGTGGAGAAAAGAACGAAAAGCTTTTTTTAATCGTG
TTGTCCCTTGGCCCTAGTCCGGGGGGGGGGTATTTGCGTCAGATCTGCCC
TATGGGGTCTTTTTGCTGTAGGAGAAGTTACCGGAGGAAGCCGGTGCCTA
GAGCCCTTGTACCAAGCCCCTGGTTCGGTTGGCTCGATTTTGATATATTT
CGCCATGTATCTGTGTAAAGTAAGGTTGATTTCTGATTTTCGAAAGGACA
GATCGCTGTTGAGTACCGCAAGTATAATGGTGGTGCTCTCCGTAAAAGGT
GAAACACGCCGGCTTTTTCAAGAGTCTCCCTGGACGTTTTTTTTTTAGGG
CTCGTGCTCTATGAGCCCGCGGGGCGTTTTGGGATTTTTACTCCTTGCGC
ACTCCGGCAAAAGGAGAGGATGGGTTCGAAAATATGTCACATCGAGTCTA
TTTCCGTCATCCGATGTGTTGAGGGTGTGGTTTGTATGATACCACGGGAG
AAAAAGACGTGTCGGAGATTCCTTCAAGTTGGCGCGTGAGCCGCGATGTC
GGGTATTTCTCCGGGTCTGGCATCTGTGAAGTGACGTATGATGAATGCCT
CTTCATCACACCTTACATGTCATTACACGAGCGCCTCACGATGTTCGGAA
CTTGGCAAACCCTGCTGCGAAACCGTGGAGGAGACTGGTTGTCGTCGACC
TACTTGTTTTTGGACGATTGATTTTGTGTCGTTCCCAAACCAAATCATGT
TCTGTATGGTCCATGCACAACAATATGTCCAACCACGTGTTTGGGCGATA
ACTTTCGAAGATAGTTCGAACTGTAGTCATGGGAGTGATCCCCACCTTAA
GGCGAGC back to topCoding sequence (CDS) from alignment at P-littoralis_Contig65:155089..167045+ >mRNA_P-littoralis_Contig65.41.1 ID=mRNA_P-littoralis_Contig65.41.1|Name=mRNA_P-littoralis_Contig65.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1995bp|location=Sequence derived from alignment at P-littoralis_Contig65:155089..167045+ (Pylaiella littoralis U1_48)
ATGCGCCTCAGGAATGCGGCGGTGGTACTCAGCGTCACCGCTACTTCAGC
CCAAGCAGGGAGTGCAGAATGGACCAGACGAAGAGGGGGGGGCGGATCGA
GCAACACCCCGGCGTTTGCGCCAGGAGGAGCTGGAGGAGGAAGAACAGGT
CTCGGGTTGTCAACACAGCAGTCGCAGCTGCAGCAGTTGAAGGCAAATAG
CAATCTACGACGACGTTCTCGACCCAAACCCCAGTACCTGTCGATGCAGC
TCAAAGAACTGTCCCCTTCCCTGGCCAGTGCGAGCGCCGAGGAGTCAGCG
GACTACAAGCGCCGGAGCGTCATCCGTGTGCTCTTCAGGGACAAGAACGC
GACGGAGGTGACGGGGTGGATGAAGACGCTCAAGAACTTGGACGGGCCGG
AGATGCCGTTCGATGAGATGCTAGAGCTCAAGTCGGAGATGGACAGGTCG
ATGAAAGCCAACAAGGAGAGCACGGAGAGGCGAAGCAGGAGATACAAGCA
CTTCGACCTCGGGCGTAACCCGACCCTCCTCACCAAAACGGAAGAGATTG
AGCTCGGGAGAAAGGTGCAAGAGCTTCTACGGTGGGAGCGCGTAAAAGCT
CACCTCGAGCTACGGTTGGGGAGAACAGCGACGATGGAGGAGTGGGCGAT
AGAGCTGGCTGCCATGGACGGGGCCGAGGGAGTGGAGAGGGAAATGAAGG
TCATGAGAGCGGCCAGAACGAGGATGATCTCGTGCAATCTTCGCCTGGTT
TTGCACATCGCTAGGAAGAAGTTTTATATGGGATCGTCAGGCAGCCTTAA
GATTAGTCTGGAGGACATGATCCAAGACGGCACGGCCGGGCTTGTGAAGG
CCGTGGAGAGGTTCGACCCTGAGAAGGGGTTTCGTTTCAGCACGTACGCG
ACGTGGTGGGTGCACCAGGCCATCCACTGCGGCTTCGCGGACTGCGGGAG
AGTGATACGGCTGCCGATGAACCTGCACACGATGGTGTGCAAGGTGATCA
GGCTGCAGACGGCCATGATGGACCAGCTGGGGAGGCAGCCCACCTTGCAG
GAGCTGTCGTTGGAGAGCGGCCTTGAAGAGAAGAAGGTCGTGAAATGCCT
CCGCGTGAACAAGGTGGAGCCTATCTCTCTGGATGTCCGTCCGAAGCGGA
GGGACGGCCATCTCCACTTCGACAAGCCGCGCAAGAACGAGCAGATCGTA
GACACCCTTCGATCTAATCGCGAACCGGAACCTGTCGTCGGCGCGGACGT
GAACCTGCTCAAGACAGACGTCGACACCATCCTCGGCGATTTGTCCGCCA
GAGAGGCCTTCGTCCTCCGGATGCGCTTCGGCATCGGCGGCAACAGCCCC
TCCACCCTCGCCGTGGTGGGGCGACGGCTGCACGTCACCCGCGAGCGCGT
CAGACAGATCCAGCTCGCCGCGATAAAGAAGCTCAGGGGCAGGTCGCCCA
CCCACGAGGTCCTCTACTCGGACAGAGCGGTCGCCAGAGAGAAGGACCCG
GCCGCGGTGCAGGCGTGCGGGTGGGACGACGGCGACTGCGACGGCCACGA
CGACGACGACGACCGCCATTACGGCGGGTTGCCACCAGCGGTGCTGATCG
GCCTGGTAAAGCAAGCCCTGGAGCCGCACCCGGCCGCCGCGGGGGAAGAG
GAGGAGGGCGAGGAGATGCGGGACGCTCGGGGGAACGTTGTCACCGGCGC
GCGGCGGCGGCTCATGGGGGAAGCGATTCAGGCTGAGCGGGCGAGGGCAG
CGGCGGCGGCGGCAGCGGCGGCGGCGGCAGCGGCGGGCTCGCACGCGGAT
GAAAAAGAAGCAGCGTCCCCCGTCAAAGGGAAAAAGAAGAAGAGGGATTT
CGTCATGAAGAGGGCGCGCAGTCCGGACGGGTGCGGCGGCGGCGGCGGCG
GCATGGAGGTAGGGATTGTCGCGAGCGGGCATCCAACGGAGCCCCCGCCA
GTGACGCCAAACCTCGCGTGGCAGCCGTCTCTGCAGGCGGCATAG back to top
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