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Homology
BLAST of mRNA_P-littoralis_Contig65.25.2 vs. uniprot
Match: A0A6H5L6U3_9PHAE (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6U3_9PHAE) HSP 1 Score: 389 bits (1000), Expect = 1.980e-123 Identity = 267/514 (51.95%), Postives = 312/514 (60.70%), Query Frame = 2
Query: 227 STTRVGLVLLCTAVVVLLGETP-----------AVRGLEMEPMRDGCLQVTFEAGDHIKTDPRCIVSRGVGLALRPPATLDRTGILKGLKRRLR-GANGQDDR-------RDKDPLQRLSNTMASNTTNCYLAPPFPGGIALLSVSGGKSEDEXXXXXXXXXXXXXXXXASPSPSSSGRSGRPHT-ADGRRERPTRDRGSGRSSSSRKAEPAASRQRKRSRLSAMGHHDNSGNPQRLVLLTQAIVAVGPEVVVQPLPS------GGRGRGRPLSHHQ--RGGTFAGVGALSVCEGCGPVALAGCGKIKKLRLRPGQKLLVDTLRAVGWTSGVMRLGDPGGSTSRSXXXXXXXRSSNVASLSAVSTFVGPGTVYVQTHSLASLRRLLLPKPGMGGSRHGGVSPGFLGIGERGTVAP-SPRHGA-VMGLSLKRGLAKRVKAAARRVAVTLAFCALYLVVYSLATALLLDGKDGLVKAPRHAIQVVRSLVNLARRVAMVLVRLGQEELWRNADGPGG 1678
ST RV LV C VVLL V G+EM ++ GCLQVT +AG+HIK DPR IVSRGVGLALRPPA L++ GIL GLKRRLR A G+ D RD L+R+SNTMASN T+C++APPFPG + ++SVS G ++ S G G+ + A G R R R GRS R +A G S P++LVLLTQAIVAVGP VVV+P P GG G G LS Q RGG GALS+CEG GP+A+AG GK+KKLRLRPGQK LVD+ RAVGWTSGV L GG S +S A +TFVGPGTVYVQTHSL LRRLLLPK G+ G V G L G RG A +PR G +GLSLKRGLAKR KA A+RV++ +AF ALYLVVYSL TALLL+G+DGL APRHA+QVVRSL +ARRVA+VLVRLG+EELWR +G GG
Sbjct: 15 STNRVSLVQRCGKQVVLLXXXXXXMLAREDADAGVMGVEMIEVKGGCLQVTLKAGEHIKADPRYIVSRGVGLALRPPAPLEKQGILGGLKRRLRKAAQGRQDHXXXXXXXRDNHRLERVSNTMASNETDCFVAPPFPGDVVVVSVSSGGGDE-----------------------SVGEDGKDYDDAHGGDRRKARQRREGRSGD---------------RPAARGSRHGSVKPRKLVLLTQAIVAVGPGVVVKPSPRPDAAGVGGLG-GSSLSRRQQQRGGPVVTTGALSLCEGQGPIAVAGYGKLKKLRLRPGQKRLVDSSRAVGWTSGVTCLTGTGGRASVPTTGNNIGANSPAG---AFTTFVGPGTVYVQTHSLPGLRRLLLPKSGV--PLQGEVPSGLLEAGRRGAGALFAPRGGPPTVGLSLKRGLAKRAKAGAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHAVQVVRSLAKVARRVAVVLVRLGREELWREGEGGGG 484
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 2470 |
| Hectar predicted targeting category | signal anchor |
| Exons | 2 |
| Ec32 ortholog description | Mitochondrial biogenesis protein AIM24 |
| Ec32 ortholog | Ec-10_006230.1 |
| Cds size | 1557 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680791353.453245-UTR-P-littoralis_Contig65:89481..89635 | 1680791353.453245-UTR-P-littoralis_Contig65:89481..89635 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig65 89482..89635 + |
| 1680791353.4899373-UTR-P-littoralis_Contig65:92175..92934 | 1680791353.4899373-UTR-P-littoralis_Contig65:92175..92934 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig65 92176..92934 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680791353.463793-CDS-P-littoralis_Contig65:89635..89833 | 1680791353.463793-CDS-P-littoralis_Contig65:89635..89833 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig65 89636..89833 + |
| 1680791353.4786105-CDS-P-littoralis_Contig65:90816..92175 | 1680791353.4786105-CDS-P-littoralis_Contig65:90816..92175 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig65 90817..92175 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig65.25.2 >prot_P-littoralis_Contig65.25.2 ID=prot_P-littoralis_Contig65.25.2|Name=mRNA_P-littoralis_Contig65.25.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=519bp
MRSSSAVNMSEKVHRQQQTKLLLLSTTRVGLVLLCTAVVVLLGETPAVRG
LEMEPMRDGCLQVTFEAGDHIKTDPRCIVSRGVGLALRPPATLDRTGILK
GLKRRLRGANGQDDRRDKDPLQRLSNTMASNTTNCYLAPPFPGGIALLSV
SGGKSEDETEDESESESKRESHRAASPSPSSSGRSGRPHTADGRRERPTR
DRGSGRSSSSRKAEPAASRQRKRSRLSAMGHHDNSGNPQRLVLLTQAIVA
VGPEVVVQPLPSGGRGRGRPLSHHQRGGTFAGVGALSVCEGCGPVALAGC
GKIKKLRLRPGQKLLVDTLRAVGWTSGVMRLGDPGGSTSRSSGGGGGGRS
SNVASLSAVSTFVGPGTVYVQTHSLASLRRLLLPKPGMGGSRHGGVSPGF
LGIGERGTVAPSPRHGAVMGLSLKRGLAKRVKAAARRVAVTLAFCALYLV
VYSLATALLLDGKDGLVKAPRHAIQVVRSLVNLARRVAMVLVRLGQEELW
RNADGPGGGLLQEGSVER* back to topmRNA from alignment at P-littoralis_Contig65:89482..92934+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig65.25.2 ID=mRNA_P-littoralis_Contig65.25.2|Name=mRNA_P-littoralis_Contig65.25.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3453bp|location=Sequence derived from alignment at P-littoralis_Contig65:89482..92934+ (Pylaiella littoralis U1_48)
TACATACACCGTGTACAGTGTGGTCCAGTTGTCGTGGGGGTGTGGGTGGG
TTTGGTGCGCATTGATTGCTCATTGCTGGTACGATTCCGAATTTCTGTGA
AGGCGTAGGTGCGCGTGAGTGTGTTTGAGGCTTGGGAGACCTGGCGTGGC
GACGATGAGGAGTTCGTCTGCTGTGAACATGAGCGAAAAGGTCCATCGGC
AGCAACAAACGAAACTGCTGTTGTTGTCAACAACACGTGTTGGACTTGTA
CTACTTTGCACTGCTGTTGTTGTGCTGCTTGGGGAGACCCCTGCTGTACG
CGGGCTGGAGATGGAACCGATGCGAGATGGCTGCCTCCAGGTCACTTTTG
AGGTACGGTCGCTCTTGTCGATGCAGCAGCACTACTACTCATGTGCAAAC
ATTCATTTGAAAATTCTTTTGTTGCACAAGAATGCTCCCAAATTGTCTTG
TCGAGCCTGATACCTCAGTCGAGCTGCACCGGTGGGTGTGTGTGTGTGTG
TGTGTTGTCATCCCTTTCATTGGACGCCACTCTACACCTTTCGGGTAGGT
AGACGCTCCAACCGGGGTCACACAGTGGGTACCGTATCTTGTCTGTGTCC
TGTTGAGTTGTAGAAACACAACACAGAGCATGATCATGGACCACATGTCA
TGAACCAGGATGGCCTGATTTTTACGGAATATTTATGTTTGTTTCCGTTC
CTAATCTACTCTCATCATCGATCGTCGCTCGTCGAGCGAAAACATTCTCG
ATGGAATAATATTATGTGAAAGTGGAACAATGGGTATGGGCCCTGTCGTA
GTCACTAACGAGGGAGAGCTGGGTGGGAGGGGGAGCTCTGTTCAGCTGCA
GGCACACACGGCATGCTTACGCAATTTTTTATCGCTGGATGTCCACCTCA
TCTGTTGAAGGTATCATATCTCGAAGTACTGTAGTGATGGCGCTTGTTTT
TGAGACTGACGTTCAGAATGCCCTCCGTGCGTTCCGCACTTCAACCCCGT
CGCACACCTCGAAGGTCACGTATGTACCGTTGATGCAGTACTTGTCCGCC
GCAATGCCTGGCGTGATCGAAATGGTCAACGTAACTGCGGTGGGATATGA
CATGACGTAACTGTACAAACGGAATATTGTGCTTAAACGCACACAAACTG
CCCGATACCAATGAGCAGCCGTGTACGAGGACCATGAAGTTTTCGGTTTT
CTGTCGGGTTAGTTCCCGAATGCAAATGTGCTAGGGTTGCCAGTCGTGGG
CCGATGCTCGGTAGGTTTTGTGTCGTGTTGTGCCGCCACCAAATGTCTTT
CTTTTTCCACTCAACCGTCCGTCGTTCTGCCCAAGGCCGGTGACCACATC
AAAACGGACCCTCGCTGCATCGTGTCCAGAGGGGTAGGACTAGCACTCCG
TCCGCCGGCCACTCTGGACAGGACGGGAATCCTCAAGGGGCTCAAGCGAC
GTCTCCGCGGGGCCAACGGACAAGATGATCGTCGAGATAAGGACCCGCTC
CAAAGGCTGTCCAACACGATGGCTTCGAACACAACCAACTGTTATCTAGC
GCCGCCGTTCCCGGGCGGAATCGCTCTACTCTCGGTCAGCGGCGGCAAAA
GCGAAGACGAAACCGAAGATGAGAGCGAAAGCGAAAGCAAAAGGGAAAGC
CACAGGGCAGCCTCGCCGTCGCCGTCGTCGTCTGGGCGATCGGGTCGGCC
TCACACCGCTGACGGTCGCCGGGAGCGGCCGACCCGAGACCGCGGGAGCG
GTCGATCCTCATCGTCGCGAAAAGCGGAACCGGCTGCCAGTAGACAGAGG
AAGCGGAGCCGCTTGTCGGCAATGGGACACCACGACAACTCCGGGAATCC
TCAGAGGCTAGTCCTGCTGACACAAGCAATTGTTGCCGTTGGTCCGGAGG
TTGTCGTGCAGCCTTTACCCTCGGGGGGAAGAGGGAGGGGGAGGCCACTG
TCCCACCATCAACGTGGTGGGACTTTCGCCGGAGTTGGCGCCCTGTCCGT
TTGCGAAGGGTGTGGACCGGTCGCGTTGGCAGGGTGCGGAAAGATCAAGA
AATTGCGGCTAAGGCCCGGGCAGAAACTGTTGGTGGATACCCTTCGCGCG
GTGGGCTGGACCAGCGGCGTGATGCGGCTCGGCGATCCAGGAGGGAGTAC
CTCCAGAAGCAGCGGCGGCGGCGGCGGCGGCAGAAGCAGCAATGTAGCAA
GCCTTTCAGCTGTGTCCACCTTTGTTGGCCCCGGGACAGTCTACGTTCAG
ACGCACTCTCTCGCGAGTCTAAGGCGGTTGCTCTTGCCGAAGCCGGGGAT
GGGGGGTTCGAGACACGGAGGCGTTTCTCCGGGTTTCCTGGGGATAGGAG
AAAGGGGAACGGTGGCACCATCTCCCCGGCACGGGGCGGTCATGGGGTTG
TCTCTGAAGAGAGGATTGGCGAAGCGAGTGAAAGCGGCGGCAAGGAGAGT
GGCGGTAACGCTGGCATTCTGTGCGCTGTACCTGGTGGTGTATTCTCTAG
CGACGGCCTTGTTGCTGGACGGGAAGGACGGGCTCGTGAAGGCGCCACGG
CACGCGATACAGGTGGTCCGCTCGCTCGTCAACTTGGCACGGCGTGTGGC
GATGGTTTTAGTACGGCTTGGGCAGGAAGAGTTGTGGAGGAATGCAGACG
GCCCAGGCGGTGGTTTACTTCAAGAAGGCTCAGTAGAACGATAGCAGGGA
AGGCTAGGTCGGGGCTTGATTTTGAACGGGTGCGTGAGTGCCCGCACGTA
CGCAGCAACAAGCTGCGGTGTTTTTTGTAGTTCGTCCTTCCACCAGGCCG
CCAGGTCCGCAGAGTTGCACGAGGTAAGATTTGGCGACCAGTGTAGTGAA
GCGTGCGTTTTCCCTGTTATATGATTTCGTCCTTTCGAAGAGAAACTAAT
ACGGAGTTTGTCATACGATTCTAGAATTTTCATAGACGAGACCTTTGAAT
GTTCCAGTCTGGATTACCCGTAACCTATCGTTGTAAGACTGCAGCCTTGG
CGCACGTCATTTTAGTTAGGTAGACATTACCGGTAGTCGCATGAAGGGAG
GTTTGTCCGCGAGCAAGATTCACTCCTCCGTAGCATACCTGGAAACCTTT
TATGTCTGTAACAGTTGTCCTGTAGCAGTTCAGCGATCAATGAGCACCTT
CTCGTTGAGCTCCGGTCCCGGTCAAGAGACTCTGTAGTGATCATGACCCC
CGGTTGAACAATACCGGGTCCCACTCCAGTCCAGCCACACCGGGAACGTC
ATGCAGCGTGCTTCGAAGTACTTACGTTGGGTTCTGATAAGTATTTGCAG
GCTGCCACTCCACGCATATCATTGAAAATCGATTCGCGATTTTGTCACTT
GCAACACAACCCCGTACATGAGCTGTGCAGGTCACTTTTCAGTGGGGATG
TCTTGAAATCCTTGCAGAGATAGTTTCATACAGCAGTGCACCTTGATGGC
CGG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig65:89482..92934+ >mRNA_P-littoralis_Contig65.25.2 ID=mRNA_P-littoralis_Contig65.25.2|Name=mRNA_P-littoralis_Contig65.25.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1557bp|location=Sequence derived from alignment at P-littoralis_Contig65:89482..92934+ (Pylaiella littoralis U1_48)
ATGAGGAGTTCGTCTGCTGTGAACATGAGCGAAAAGGTCCATCGGCAGCA
ACAAACGAAACTGCTGTTGTTGTCAACAACACGTGTTGGACTTGTACTAC
TTTGCACTGCTGTTGTTGTGCTGCTTGGGGAGACCCCTGCTGTACGCGGG
CTGGAGATGGAACCGATGCGAGATGGCTGCCTCCAGGTCACTTTTGAGGC
CGGTGACCACATCAAAACGGACCCTCGCTGCATCGTGTCCAGAGGGGTAG
GACTAGCACTCCGTCCGCCGGCCACTCTGGACAGGACGGGAATCCTCAAG
GGGCTCAAGCGACGTCTCCGCGGGGCCAACGGACAAGATGATCGTCGAGA
TAAGGACCCGCTCCAAAGGCTGTCCAACACGATGGCTTCGAACACAACCA
ACTGTTATCTAGCGCCGCCGTTCCCGGGCGGAATCGCTCTACTCTCGGTC
AGCGGCGGCAAAAGCGAAGACGAAACCGAAGATGAGAGCGAAAGCGAAAG
CAAAAGGGAAAGCCACAGGGCAGCCTCGCCGTCGCCGTCGTCGTCTGGGC
GATCGGGTCGGCCTCACACCGCTGACGGTCGCCGGGAGCGGCCGACCCGA
GACCGCGGGAGCGGTCGATCCTCATCGTCGCGAAAAGCGGAACCGGCTGC
CAGTAGACAGAGGAAGCGGAGCCGCTTGTCGGCAATGGGACACCACGACA
ACTCCGGGAATCCTCAGAGGCTAGTCCTGCTGACACAAGCAATTGTTGCC
GTTGGTCCGGAGGTTGTCGTGCAGCCTTTACCCTCGGGGGGAAGAGGGAG
GGGGAGGCCACTGTCCCACCATCAACGTGGTGGGACTTTCGCCGGAGTTG
GCGCCCTGTCCGTTTGCGAAGGGTGTGGACCGGTCGCGTTGGCAGGGTGC
GGAAAGATCAAGAAATTGCGGCTAAGGCCCGGGCAGAAACTGTTGGTGGA
TACCCTTCGCGCGGTGGGCTGGACCAGCGGCGTGATGCGGCTCGGCGATC
CAGGAGGGAGTACCTCCAGAAGCAGCGGCGGCGGCGGCGGCGGCAGAAGC
AGCAATGTAGCAAGCCTTTCAGCTGTGTCCACCTTTGTTGGCCCCGGGAC
AGTCTACGTTCAGACGCACTCTCTCGCGAGTCTAAGGCGGTTGCTCTTGC
CGAAGCCGGGGATGGGGGGTTCGAGACACGGAGGCGTTTCTCCGGGTTTC
CTGGGGATAGGAGAAAGGGGAACGGTGGCACCATCTCCCCGGCACGGGGC
GGTCATGGGGTTGTCTCTGAAGAGAGGATTGGCGAAGCGAGTGAAAGCGG
CGGCAAGGAGAGTGGCGGTAACGCTGGCATTCTGTGCGCTGTACCTGGTG
GTGTATTCTCTAGCGACGGCCTTGTTGCTGGACGGGAAGGACGGGCTCGT
GAAGGCGCCACGGCACGCGATACAGGTGGTCCGCTCGCTCGTCAACTTGG
CACGGCGTGTGGCGATGGTTTTAGTACGGCTTGGGCAGGAAGAGTTGTGG
AGGAATGCAGACGGCCCAGGCGGTGGTTTACTTCAAGAAGGCTCAGTAGA
ACGATAG back to top
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