prot_P-littoralis_Contig65.25.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig65.25.2
Unique Nameprot_P-littoralis_Contig65.25.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length519
Homology
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BLAST of mRNA_P-littoralis_Contig65.25.2 vs. uniprot
Match: A0A6H5L6U3_9PHAE (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6U3_9PHAE)

HSP 1 Score: 390 bits (1003), Expect = 8.540e-128
Identity = 270/524 (51.53%), Postives = 315/524 (60.11%), Query Frame = 0 
Query:   25 STTRVGLVLLCTAVVVLLGETP-----------AVRGLEMEPMRDGCLQVTFEAGDHIKTDPRCIVSRGVGLALRPPATLDRTGILKGLKRRLR-GANGQDDR-------RDKDPLQRLSNTMASNTTNCYLAPPFPGGIALLSVSGGKSEDEXXXXXXXXXXXXXXXXASPSPSSSGRSGRPHT-ADGRRERPTRDRGSGRSSSSRKAEPAASRQRKRSRLSAMGHHDNSGNPQRLVLLTQAIVAVGPEVVVQPLPS------GGRGRGRPLSHHQ--RGGTFAGVGALSVCEGCGPVALAGCGKIKKLRLRPGQKLLVDTLRAVGWTSGVMRLGDPGGSTSRSXXXXXXXRSSNVASLSAVSTFVGPGTVYVQTHSLASLRRLLLPKPGMGGSRHGGVSPGFLGIGERGTVAP-SPRHGA-VMGLSLKRGLAKRVKAAARRVAVTLAFCALYLVVYSLATALLLDGKDGLVKAPRHAIQVVRSLVNLARRVAMVLVRLGQEELWRNADGPGGGLLQEGSVER 518
            ST RV LV  C   VVLL                V G+EM  ++ GCLQVT +AG+HIK DPR IVSRGVGLALRPPA L++ GIL GLKRRLR  A G+ D        RD   L+R+SNTMASN T+C++APPFPG + ++SVS G  ++                       S G  G+ +  A G   R  R R  GRS                 R +A G    S  P++LVLLTQAIVAVGP VVV+P P       GG G G  LS  Q  RGG     GALS+CEG GP+A+AG GK+KKLRLRPGQK LVD+ RAVGWTSGV  L   GG  S          +S      A +TFVGPGTVYVQTHSL  LRRLLLPK G+     G V  G L  G RG  A  +PR G   +GLSLKRGLAKR KA A+RV++ +AF ALYLVVYSL TALLL+G+DGL  APRHA+QVVRSL  +ARRVA+VLVRLG+EELWR  +G GG   Q    ER
Sbjct:   15 STNRVSLVQRCGKQVVLLXXXXXXMLAREDADAGVMGVEMIEVKGGCLQVTLKAGEHIKADPRYIVSRGVGLALRPPAPLEKQGILGGLKRRLRKAAQGRQDHXXXXXXXRDNHRLERVSNTMASNETDCFVAPPFPGDVVVVSVSSGGGDE-----------------------SVGEDGKDYDDAHGGDRRKARQRREGRSGD---------------RPAARGSRHGSVKPRKLVLLTQAIVAVGPGVVVKPSPRPDAAGVGGLG-GSSLSRRQQQRGGPVVTTGALSLCEGQGPIAVAGYGKLKKLRLRPGQKRLVDSSRAVGWTSGVTCLTGTGGRASVPTTGNNIGANSPAG---AFTTFVGPGTVYVQTHSLPGLRRLLLPKSGV--PLQGEVPSGLLEAGRRGAGALFAPRGGPPTVGLSLKRGLAKRAKAGAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHAVQVVRSLAKVARRVAVVLVRLGREELWREGEGGGGTPPQIRPAER 494
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.25.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6U3_9PHAE8.540e-12851.53Altered inheritance of mitochondria protein 24, mi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036983Mitochondrial biogenesis AIM24 superfamilyGENE3D3.60.160.10Mitochondrial biogenesis AIM24coord: 270..385
e-value: 6.8E-10
score: 40.4
IPR002838Mitochondrial biogenesis protein AIM24PFAMPF01987AIM24coord: 285..373
e-value: 2.2E-7
score: 30.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 335..350
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..240
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..208
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 330..350
IPR016031Tryptophan RNA-binding attenuator protein-like domain superfamilySUPERFAMILY51219TRAP-likecoord: 288..388

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig65contigP-littoralis_Contig65:89636..92175 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig65.25.2mRNA_P-littoralis_Contig65.25.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig65 89482..92934 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig65.25.2 ID=prot_P-littoralis_Contig65.25.2|Name=mRNA_P-littoralis_Contig65.25.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=519bp
MRSSSAVNMSEKVHRQQQTKLLLLSTTRVGLVLLCTAVVVLLGETPAVRG
LEMEPMRDGCLQVTFEAGDHIKTDPRCIVSRGVGLALRPPATLDRTGILK
GLKRRLRGANGQDDRRDKDPLQRLSNTMASNTTNCYLAPPFPGGIALLSV
SGGKSEDETEDESESESKRESHRAASPSPSSSGRSGRPHTADGRRERPTR
DRGSGRSSSSRKAEPAASRQRKRSRLSAMGHHDNSGNPQRLVLLTQAIVA
VGPEVVVQPLPSGGRGRGRPLSHHQRGGTFAGVGALSVCEGCGPVALAGC
GKIKKLRLRPGQKLLVDTLRAVGWTSGVMRLGDPGGSTSRSSGGGGGGRS
SNVASLSAVSTFVGPGTVYVQTHSLASLRRLLLPKPGMGGSRHGGVSPGF
LGIGERGTVAPSPRHGAVMGLSLKRGLAKRVKAAARRVAVTLAFCALYLV
VYSLATALLLDGKDGLVKAPRHAIQVVRSLVNLARRVAMVLVRLGQEELW
RNADGPGGGLLQEGSVER*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036983AIM24_sf
IPR002838AIM24
IPR016031Trp_RNA-bd_attenuator-like_dom