mRNA_P-littoralis_Contig645.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig645.34.1
Unique NamemRNA_P-littoralis_Contig645.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig645.34.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 533 bits (1373), Expect = 1.260e-188
Identity = 255/260 (98.08%), Postives = 255/260 (98.08%), Query Frame = 1
Query:    1 VLACLTILGRGNVFGSIYNLSWMSTSTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGHSYTGKEGKPTVGYQVTVNHAGRVLTVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFIILKLAMTYQKQERLDYVFFTCCILHYMLHTHDGMGGLEED 780
            VLACLTILGRGNVFGSIYNLSWMST TVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQG SYTGKEGKPTVGYQVTVNHAGRVL VTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRF ILKLAMTYQKQERLDYVFFTCCILH MLHTHDGMGGLEED
Sbjct:  128 VLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEED 387          
BLAST of mRNA_P-littoralis_Contig645.34.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 410 bits (1053), Expect = 5.980e-141
Identity = 193/260 (74.23%), Postives = 218/260 (83.85%), Query Frame = 1
Query:    1 VLACLTILGRGNVFGSIYNLSWMSTSTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGHSYTGKEGKPTVGYQVTVNHAGRVLTVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFIILKLAMTYQKQERLDYVFFTCCILHYMLHTHDGMGGLEED 780
            VLA LTILGRGN F SIY +SWMS  TVQ +FH+FC+HFA EMYDEHI+LPSE+NGELD VM QY++LGF GAMGS DVTHIGWS+CPYN   SYTGKEG PTVGYQVTVNHAGR + VTEGFT STNDKT +C D  V++IRTD QY EK F V+ +DGTT TLKGCYL+VDNGYHKW++L+EP+KYPLSE D+LFSKRLESVRKDVECFFGILK  F I K+AM Y +QER+D VFFTCCILH MLHT DGM  L E+
Sbjct:   99 VLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVEN 358          
BLAST of mRNA_P-littoralis_Contig645.34.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 390 bits (1003), Expect = 1.160e-132
Identity = 195/288 (67.71%), Postives = 217/288 (75.35%), Query Frame = 1
Query:    1 VLACLTILGRGNVFGSIYNLSWMSTSTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGHSYTGKEGKPTVGYQVTVNHAGRVLTVTEGFTGSTNDKTIICCDEAVDRIRTDKQYA----------------------------EKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFIILKLAMTYQKQERLDYVFFTCCILHYMLHTHDGMGGLEED 780
            VLA LTILGRGN F SIY +SWMS  TVQ +FH+FC HFA EMYDE I LP+EE+G+LD VM QY++LGF GA+GS DVTHI WSRCPYNQ  SYTGKEG PT+ YQVTV+HAGR + VTEGFTGSTNDKTI+C D AV++I TDK Y                             EK F V+ +DGTT TLKGCYL+VDNGYHKW++LIEPSKYPLSE DLLFSKRLESVRKDVECFFGILK RF ILKLAM YQ QER+D VFFTC ILH MLHT DGM  L E+
Sbjct:   86 VLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVEN 373          
BLAST of mRNA_P-littoralis_Contig645.34.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 360 bits (925), Expect = 2.030e-122
Identity = 178/260 (68.46%), Postives = 201/260 (77.31%), Query Frame = 1
Query:    1 VLACLTILGRGNVFGSIYNLSWMSTSTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGHSYTGKEGKPTVGYQVTVNHAGRVLTVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFIILKLAMTYQKQERLDYVFFTCCILHYMLHTHDGMGGLEED 780
            VLA LTILG+GN F SI+ +SWMS  TVQ VFH+FC  FA EMYDEHI LP+EE+G+L  VM QY++LG                 CPYNQ  SYTGK+  PT+ YQVTV+HA R + VTEGFTGSTNDKTI+C D AVD+IRTDKQY EK F ++ +DGTT TLKGCY + DNGYHKW++LIEPSKYPLSE DLLFSKRLESVRKDVECFFGILK RF ILKLAM YQ QER+D VFFTCCILH MLHT DGM  L E+
Sbjct:   21 VLAWLTILGKGNCFASIFQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVEN 263          
BLAST of mRNA_P-littoralis_Contig645.34.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 349 bits (895), Expect = 2.070e-118
Identity = 165/218 (75.69%), Postives = 186/218 (85.32%), Query Frame = 1
Query:  127 MYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGHSYTGKEGKPTVGYQVTVNHAGRVLTVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFIILKLAMTYQKQERLDYVFFTCCILHYMLHTHDGMGGLEED 780
            MYDEHI LP+EE+G+LD V+ QY++LGF GAMGS DVTHI WSRCPYNQ  SYTGKEG PT+GYQVTV+HAGR + VTEGFTGSTNDKT +C D AV++IRTDKQY EK F V+ +DGTT TLKGCY++VDNGYHKW++LIEPSKYPLSE DLLFSKRLESVRKDVECFFGILK R  IL LAM +Q QER+D VFFTCCILH MLHT DGM  L E+
Sbjct:    1 MYDEHIHLPTEESGKLDLVIEQYDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVEN 218          
BLAST of mRNA_P-littoralis_Contig645.34.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 345 bits (884), Expect = 4.500e-115
Identity = 164/260 (63.08%), Postives = 202/260 (77.69%), Query Frame = 1
Query:    1 VLACLTILGRGNVFGSIYNLSWMSTSTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGHSYTGKEGKPTVGYQVTVNHAGRVLTVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFIILKLAMTYQKQERLDYVFFTCCILHYMLHTHDGMGGLEED 780
            VLACL IL RGNVF  IY++S++S  TV   FH+FC++FA E+YDE+++LP+ E+  L +VM QY+++GFPGA+GSTDVTHI W  CPYNQ   YTGKEGKPTV +QVTV+H+GRVL VT GFTG+TNDKTII  D+AV RIRTD  Y E+ + ++ +DG     KGCYL+VDNGYHKWR LI PSK P+   DL+FSKRLES RKDVEC+FGILK RF I KLA+ + KQE +D VFFTCCILH MLH+ D  G + E+
Sbjct:   84 VLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGED--LRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEE 341          
BLAST of mRNA_P-littoralis_Contig645.34.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 345 bits (884), Expect = 7.740e-114
Identity = 164/260 (63.08%), Postives = 202/260 (77.69%), Query Frame = 1
Query:    1 VLACLTILGRGNVFGSIYNLSWMSTSTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGHSYTGKEGKPTVGYQVTVNHAGRVLTVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFIILKLAMTYQKQERLDYVFFTCCILHYMLHTHDGMGGLEED 780
            VLACL IL RGNVF  IY++S++S  TV   FH+FC++FA E+YDE+++LP+ E+  L +VM QY+++GFPGA+GSTDVTHI W  CPYNQ   YTGKEGKPTV +QVTV+H+GRVL VT GFTG+TNDKTII  D+AV RIRTD  Y E+ + ++ +DG     KGCYL+VDNGYHKWR LI PSK P+   DL+FSKRLES RKDVEC+FGILK RF I KLA+ + KQE +D VFFTCCILH MLH+ D  G + E+
Sbjct:  175 VLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGED--LRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEE 432          
BLAST of mRNA_P-littoralis_Contig645.34.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 340 bits (873), Expect = 2.250e-112
Identity = 168/260 (64.62%), Postives = 197/260 (75.77%), Query Frame = 1
Query:    1 VLACLTILGRGNVFGSIYNLSWMSTSTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGHSYTGKEGKPTVGYQVTVNHAGRVLTVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFIILKLAMTYQKQERLDYVFFTCCILHYMLHTHDGMGGLEED 780
            VLACL IL RGN F  IY++S++S  T    FH+F  +FA EMY EHIFLP+ +  +  +VM QY++LGF GA GSTDVTHI W  CPYNQ  SYTGKEG PTV YQVTV+H  RVL VT GFTGSTNDK+II  D AV +IR D  Y+EK FTV++ DGT   LKGCYL+VDNGYHKW  LI PSKYP+ + DL FSKRLESVRKDVECFFGI+K RF ILKL++ Y KQE +D VFFTCCILH MLH++D    +EE+
Sbjct:  159 VLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQK--KVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEE 416          
BLAST of mRNA_P-littoralis_Contig645.34.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 6.480e-97
Identity = 137/189 (72.49%), Postives = 158/189 (83.60%), Query Frame = 1
Query:    1 VLACLTILGRGNVFGSIYNLSWMSTSTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGHSYTGKEGKPTVGYQVTVNHAGRVLTVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYP 567
            VLA LTILGRGN F SIY +SWMS +TVQ +FH FC+HFA EMYDEHI+LPSE+NGELD VM QY++LGF GAMGS DVTHI W++CPYN   SYTGKEG PT+GYQVTVNHAGR   VTEGFTGSTNDKTI+C D AV++IRTDKQY EK F V+ +DGTT TLKGCYL+VDNGYHKW++L+   + P
Sbjct:  126 VLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILMGAHQVP 314          
BLAST of mRNA_P-littoralis_Contig645.34.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 7.410e-95
Identity = 144/254 (56.69%), Postives = 175/254 (68.90%), Query Frame = 1
Query:   19 ILGRGNVFGSIYNLSWMSTSTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGHSYTGKEGKPTVGYQVTVNHAGRVLTVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFIILKLAMTYQKQERLDYVFFTCCILHYMLHTHDGMGGLEED 780
            +LG+GN F  +  LS MS S  Q  FH+FC HFA EM+DEHI+LP+     LD VMG + +LG+ GA GSTDVTHIGW+ CP+  G S+TGKEG PT+ Y VTV+H GR L VT GFTG+TNDKTII  D  V++IRT  QY E+ + + K +GT    +GC+LIVDNGYH+W  LI PSKYP    D  FS+ LESVRKDV CF         ILKL M Y K+E +D +FFTCCILH MLHT DG+   EE+
Sbjct:   43 VLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPT--GTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCFR--------ILKLRMPYHKREYVDNIFFTCCILHNMLHTFDGLDVFEEN 286          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig645.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBE2_9PHAE1.260e-18898.08Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE5.980e-14174.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE1.160e-13267.71DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JUX7_9PHAE2.030e-12268.46DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FSK2_ECTSI2.070e-11875.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KY50_9PHAE4.500e-11563.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE7.740e-11463.08Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE2.250e-11264.62Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FPI7_ECTSI6.480e-9772.49Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5K796_9PHAE7.410e-9556.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig645contigP-littoralis_Contig645:118433..119413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size780
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.39e-119
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size780
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791345.6599576-CDS-P-littoralis_Contig645:118432..1189661680791345.6599576-CDS-P-littoralis_Contig645:118432..118966Pylaiella littoralis U1_48CDSP-littoralis_Contig645 118433..118966 +
1680791345.6759899-CDS-P-littoralis_Contig645:119167..1194131680791345.6759899-CDS-P-littoralis_Contig645:119167..119413Pylaiella littoralis U1_48CDSP-littoralis_Contig645 119168..119413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig645.34.1prot_P-littoralis_Contig645.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig645 118433..119413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig645.34.1

>prot_P-littoralis_Contig645.34.1 ID=prot_P-littoralis_Contig645.34.1|Name=mRNA_P-littoralis_Contig645.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=260bp
VLACLTILGRGNVFGSIYNLSWMSTSTVQKVFHQFCEHFATEMYDEHIFL
PSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGHSYTGKEG
KPTVGYQVTVNHAGRVLTVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAE
KPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKR
LESVRKDVECFFGILKMRFIILKLAMTYQKQERLDYVFFTCCILHYMLHT
HDGMGGLEED
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mRNA from alignment at P-littoralis_Contig645:118433..119413+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig645.34.1 ID=mRNA_P-littoralis_Contig645.34.1|Name=mRNA_P-littoralis_Contig645.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=981bp|location=Sequence derived from alignment at P-littoralis_Contig645:118433..119413+ (Pylaiella littoralis U1_48)
GTGCTGGCGTGTCTGACTATACTGGGCAGGGGGAATGTATTCGGAAGCAT CTACAACCTTTCGTGGATGAGCACCTCGACAGTGCAGAAGGTGTTCCACC AGTTCTGCGAGCACTTCGCAACCGAGATGTACGACGAGCACATCTTCCTT CCCAGCGAGGAGAACGGCGAGCTGGATCGCGTCATGGGACAGTACGAGAA GCTGGGGTTCCCGGGCGCAATGGGTTCAACGGACGTCACCCATATCGGGT GGAGTAGGTGCCCGTATAACCAAGGACATTCTTACACCGGTAAGGAAGGC AAGCCTACGGTCGGATACCAGGTGACGGTCAACCACGCTGGGCGTGTGCT GACCGTGACAGAGGGGTTTACTGGGTCCACCAACGACAAGACCATCATCT GCTGTGATGAAGCGGTAGACAGAATTCGGACCGACAAGCAGTACGCCGAA AAACCATTCACAGTCCACAAAAAGGATGGTACGACGGAAACCCTCAAGGG GTGCTACCTCATCGTCGACAATGGTTACCACAAGGTGAAAAATGTAAAGT ACCACACGAAATGTCGGGGGGGGGGTTTCACGAGCACGCCTTGTTTGTCG GCCAACCTACACTTTCATCCCGCTTGGTCGAGCTCCATGCCGTGGGTTTG ACGTGCGACAATGAACGCGGTATGACACACAGAAGGTTAATATTTCCCCT TCTCTCCTTTGGTTTGTTTCGGTCCTTTCATGCAGTGGCGGATGCTCATT GAACCCTCGAAGTACCCGTTGAGCGAGGCTGACTTGCTGTTCTCGAAGAG GCTTGAGAGCGTGCGCAAGGATGTGGAGTGTTTTTTCGGCATCCTGAAGA TGCGCTTCATAATCCTGAAGCTCGCCATGACCTACCAGAAGCAGGAGCGC CTGGACTACGTCTTCTTCACGTGCTGTATCCTGCACTACATGCTCCATAC GCATGACGGCATGGGCGGCCTGGAGGAGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig645:118433..119413+

>mRNA_P-littoralis_Contig645.34.1 ID=mRNA_P-littoralis_Contig645.34.1|Name=mRNA_P-littoralis_Contig645.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=780bp|location=Sequence derived from alignment at P-littoralis_Contig645:118433..119413+ (Pylaiella littoralis U1_48)
GTGCTGGCGTGTCTGACTATACTGGGCAGGGGGAATGTATTCGGAAGCAT
CTACAACCTTTCGTGGATGAGCACCTCGACAGTGCAGAAGGTGTTCCACC
AGTTCTGCGAGCACTTCGCAACCGAGATGTACGACGAGCACATCTTCCTT
CCCAGCGAGGAGAACGGCGAGCTGGATCGCGTCATGGGACAGTACGAGAA
GCTGGGGTTCCCGGGCGCAATGGGTTCAACGGACGTCACCCATATCGGGT
GGAGTAGGTGCCCGTATAACCAAGGACATTCTTACACCGGTAAGGAAGGC
AAGCCTACGGTCGGATACCAGGTGACGGTCAACCACGCTGGGCGTGTGCT
GACCGTGACAGAGGGGTTTACTGGGTCCACCAACGACAAGACCATCATCT
GCTGTGATGAAGCGGTAGACAGAATTCGGACCGACAAGCAGTACGCCGAA
AAACCATTCACAGTCCACAAAAAGGATGGTACGACGGAAACCCTCAAGGG
GTGCTACCTCATCGTCGACAATGGTTACCACAAGTGGCGGATGCTCATTG
AACCCTCGAAGTACCCGTTGAGCGAGGCTGACTTGCTGTTCTCGAAGAGG
CTTGAGAGCGTGCGCAAGGATGTGGAGTGTTTTTTCGGCATCCTGAAGAT
GCGCTTCATAATCCTGAAGCTCGCCATGACCTACCAGAAGCAGGAGCGCC
TGGACTACGTCTTCTTCACGTGCTGTATCCTGCACTACATGCTCCATACG
CATGACGGCATGGGCGGCCTGGAGGAGGAC
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