mRNA_P-littoralis_Contig64.150.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig64.150.1
Unique NamemRNA_P-littoralis_Contig64.150.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig64.150.1 vs. uniprot
Match: Q8QNJ6_ESV1K (EsV-1-77 n=2 Tax=root TaxID=1 RepID=Q8QNJ6_ESV1K)

HSP 1 Score: 414 bits (1064), Expect = 2.790e-142
Identity = 200/246 (81.30%), Postives = 218/246 (88.62%), Query Frame = 3
Query:  252 P*DGEKYNSCPSVLPVNVGILNNLRNCLEVMKINSQHCPDGCAKRIHFIDPRVDMVSVLPDGKLFEAISFYAHHKASQGYFDDAVLTIFESIVHPLSSLLPDRKNLTGRLIGVFEAFRTKMTPVQRATFDKIWVRDITGGIGAVNSKYIKLHDTYSSSKRKNTLSLNKFSQDVEEIKQIYKRYTNKFMDVWLLAHIFMIQNTTGSNGMVMYLGSLHGLEIEKYLSLHGLRKIHHSESQNLDSCLVL 989
            P  G K +   +   VNVGILNNLR+CLEVMKINSQHCP GCAKRIHFIDPRVDMVSVLPDGKLFEAISFYAHHKAS G FDDAVLT+FES+VHPLSSLLPDR NL GRL+GVFE FR KMTPVQR TFD+IWVRDITGGI  +N+KY+KLH+ Y +S+RK   SL  FSQDVEEIKQ+YKRYTNKFMDVWLLAHIFMIQNT GSNGMVMYLGSLHGLEIEKYLSLHGLRKIHHSE+Q+LDSCL++
Sbjct:   85 PKTGIKTSVAQACSAVNVGILNNLRSCLEVMKINSQHCPGGCAKRIHFIDPRVDMVSVLPDGKLFEAISFYAHHKASHGSFDDAVLTVFESLVHPLSSLLPDRANLAGRLVGVFETFRNKMTPVQRVTFDRIWVRDITGGIADINAKYVKLHENYCASRRKRAPSLANFSQDVEEIKQLYKRYTNKFMDVWLLAHIFMIQNTAGSNGMVMYLGSLHGLEIEKYLSLHGLRKIHHSENQHLDSCLLM 330          
BLAST of mRNA_P-littoralis_Contig64.150.1 vs. uniprot
Match: B5LWA8_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWA8_9PHYC)

HSP 1 Score: 141 bits (356), Expect = 3.950e-36
Identity = 81/226 (35.84%), Postives = 121/226 (53.54%), Query Frame = 3
Query:  312 LNNLRNCLEVMKINSQHCPDGCAKRIHFIDPRVDMVSVLPDGKLFEAISFYAHHKASQGYFDDAVLTIFESIVHPLSSLLPDRKNLTGRLIGVFEAFRTKMTPVQRATFDKIWVRDITGGIGAVNSKYIKLHDTYSSSKRKNTLSLNKFSQDVEEIKQIYKRYTNKFMDVWLLAHIFMIQNTTGSNGMVMYLGSLHGLEIEKYLSLHGLRKIHHSESQNLDSCLVL 989
            L +LRNCL+  +  +     G A RIHFIDPR+D+V++LPDG +++A+S Y  H    G F  A  T++E+ VHPL SL+PDR  L GR+  V E   + +TP QR  F   W   + G +  V    ++++  ++  K             ++ + Q Y    N F D+WLLA  F+ QN  G    ++Y GS H L  E +L   G  KI   ++++L +CL L
Sbjct:   98 LKHLRNCLQFARNKTP----GYADRIHFIDPRMDLVAILPDGNVYKAVSHYITHLDEVGDFPAARRTVYEAFVHPLLSLVPDRVGLEGRMERVMERTISLLTPRQRKFFTLSWETGVVGNVARV----VQIYKQFAKPKH------------LKSLLQAYTDMVNHFTDLWLLAEFFVAQNY-GMTAGIVYAGSRHSLNFENFLEELGYEKIKVVQNRDLSACLAL 302          
BLAST of mRNA_P-littoralis_Contig64.150.1 vs. uniprot
Match: Q6XLU4_9PHYC (FirrV-1-I2 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLU4_9PHYC)

HSP 1 Score: 124 bits (311), Expect = 1.610e-29
Identity = 75/227 (33.04%), Postives = 114/227 (50.22%), Query Frame = 3
Query:  312 LNNLRNCLEVMKINSQHCPDGCAKRIHFIDPRVDMVSVLPDGKLFEAISFYAHHKASQGYFDDAVLTIFESIVHPLSSLLPDRKNLTGRLIGVFEAFRTKMTPVQRATFDKIWVRDITGGIGAVNSKYI-KLHDTYSSSKRKNTLSLNKFSQDVEEIKQIYKRYTNKFMDVWLLAHIFMIQNTTGSNGMVMYLGSLHGLEIEKYLSLHGLRKIHHSESQNLDSCLVL 989
            L  LRNCL + +   Q        RIHFIDPR D+V++LPDG +++A+  YA H   Q    +  L ++E+ VHPL S++     L GRL  + + +   MTP Q       W  D+      +N  Y+ +++D  SS            S  +  + + Y    NKF D+WLLA+ F   N +   G ++Y GS H L  EKYL+      + H+ +Q+L +CL +
Sbjct:   95 LTRLRNCLGIDQQQQQQ--RDSENRIHFIDPRTDLVAILPDGTVYQAVLHYAKHLRRQHKQPELKLLLYETFVHPLLSIVNPDGTLQGRLNVIMQKYMENMTPSQHRFLCSKWHNDVI-----LNVLYVYRVYDELSSD-----------SIGIVPLLEAYTDMVNKFTDLWLLANFFKADNDS-MTGAIVYAGSKHSLHFEKYLAEMQYDLLDHNSNQDLSACLTI 302          
BLAST of mRNA_P-littoralis_Contig64.150.1 vs. uniprot
Match: Q6XM25_9PHYC (FirrV-1-B11 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM25_9PHYC)

HSP 1 Score: 121 bits (303), Expect = 1.710e-28
Identity = 77/230 (33.48%), Postives = 114/230 (49.57%), Query Frame = 3
Query:  312 LNNLRNCLEVMKINSQHCPDGCAKRIHFIDPRVDMVSVLPDGKLFEAISFYAHHKASQGYFDDAVLTIFESIVHPLSSLLP---DRKNLTGRLIGVFEAFRTKMTPVQRATFDKIWVRDITGGIGAVNSKYIKLHDTYSSSKRKNTLSLNKFSQDVEEIKQIYKRYTNKFMDVWLLAHIFMIQNTTGSNGMVMYLGSLHGLEIEKYLSLHGLRKIHHSESQNLDSCLVLK 992
            L NLR CL          P G   RIH+IDPR D+V++LP+G++ EAI  YAHH  SQ    +  L ++E+ +HPL S++    D   L GRL  V + +   MT  Q   F   W  D+   I  V   Y +     S+               +  + + Y    N+FMD+WLLA+ F+ +N+ G  G ++Y GS H L  EKYL+      +    +++L +CL L+
Sbjct:   93 LQNLRGCL----------PKG--PRIHYIDPRTDLVAILPNGQILEAIVHYAHHLHSQHKDLELKLLLYETFIHPLLSIVSPSGDSAVLEGRLNTVLQKYVANMTTAQMGFFRDKWSVDVIANIENVRRIYHECTTRLSN---------------LPALLEAYTDTVNRFMDLWLLANFFVAENS-GMTGSIIYAGSKHSLHFEKYLAEMRYELLEQFTNRDLSACLALR 294          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig64.150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q8QNJ6_ESV1K2.790e-14281.30EsV-1-77 n=2 Tax=root TaxID=1 RepID=Q8QNJ6_ESV1K[more]
B5LWA8_9PHYC3.950e-3635.84Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XLU4_9PHYC1.610e-2933.04FirrV-1-I2 n=1 Tax=Feldmannia irregularis virus a ... [more]
Q6XM25_9PHYC1.710e-2833.48FirrV-1-B11 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig64contigP-littoralis_Contig64:571032..572026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size995
Hectar predicted targeting categoryother localisation
Exons1
Cds size654
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791336.6085036-UTR-P-littoralis_Contig64:571031..5713721680791336.6085036-UTR-P-littoralis_Contig64:571031..571372Pylaiella littoralis U1_48UTRP-littoralis_Contig64 571032..571372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791336.6188807-CDS-P-littoralis_Contig64:571372..5720261680791336.6188807-CDS-P-littoralis_Contig64:571372..572026Pylaiella littoralis U1_48CDSP-littoralis_Contig64 571373..572026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig64.150.1prot_P-littoralis_Contig64.150.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig64 571373..572026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig64.150.1

>prot_P-littoralis_Contig64.150.1 ID=prot_P-littoralis_Contig64.150.1|Name=mRNA_P-littoralis_Contig64.150.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=218bp
MKINSQHCPDGCAKRIHFIDPRVDMVSVLPDGKLFEAISFYAHHKASQGY
FDDAVLTIFESIVHPLSSLLPDRKNLTGRLIGVFEAFRTKMTPVQRATFD
KIWVRDITGGIGAVNSKYIKLHDTYSSSKRKNTLSLNKFSQDVEEIKQIY
KRYTNKFMDVWLLAHIFMIQNTTGSNGMVMYLGSLHGLEIEKYLSLHGLR
KIHHSESQNLDSCLVLK*
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mRNA from alignment at P-littoralis_Contig64:571032..572026+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig64.150.1 ID=mRNA_P-littoralis_Contig64.150.1|Name=mRNA_P-littoralis_Contig64.150.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=995bp|location=Sequence derived from alignment at P-littoralis_Contig64:571032..572026+ (Pylaiella littoralis U1_48)
ATGAACGATCGACAGGTCTTAGACGAGATTGTCGGTGTGGGGACAACAAT CCCAGTGTCTGGCCCATGGAGGTTAACTGTTTGGGATTCACCAAGCACCG GGAAGCTCTATGTTTTTAGCGAAGAACATGGCAACAAAGGTTCTTGCCCT CAAAACCGACATTTTTCTACCCTTGCGTCGGAAATACTGCAGAAAACAAG AGGAGTACATGTGCTGGTAGAGAACTTCATTCATGCCAACGACATAACGA CCCCTAAGACGGGGAGAAATACAACTCTTGCCCAAGCGTGCTCCCCGTCA ATGTTGGAATTCTCAACAATCTTCGAAATTGTCTCGAGGTGATGAAGATC AACTCTCAGCACTGTCCTGACGGGTGCGCGAAGCGTATCCATTTCATTGA TCCTCGTGTGGATATGGTGTCTGTTCTTCCGGACGGAAAGTTGTTCGAGG CCATTTCATTTTACGCCCACCACAAGGCATCACAGGGGTATTTCGATGAT GCGGTGTTAACGATCTTTGAGTCGATCGTCCACCCTCTCTCAAGTCTCTT GCCAGATAGAAAAAACCTCACCGGACGGCTGATAGGCGTCTTCGAGGCGT TCAGGACAAAAATGACTCCGGTGCAGAGGGCGACTTTTGATAAAATATGG GTTCGTGATATCACCGGTGGAATTGGTGCAGTAAATTCCAAGTATATTAA ACTTCACGACACTTATTCTTCGTCAAAGAGAAAAAATACCCTGTCGCTCA ACAAGTTCTCTCAAGACGTGGAAGAAATCAAACAAATATACAAACGCTAC ACCAACAAGTTTATGGACGTGTGGCTCCTCGCTCACATCTTCATGATACA GAACACAACGGGGTCCAATGGAATGGTGATGTACTTGGGGTCGCTTCATG GCCTCGAGATAGAAAAATACCTCAGCCTTCATGGTCTTCGCAAAATACAC CACTCGGAGAGCCAAAACCTGGATTCCTGCCTTGTCCTGAAATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig64:571032..572026+

>mRNA_P-littoralis_Contig64.150.1 ID=mRNA_P-littoralis_Contig64.150.1|Name=mRNA_P-littoralis_Contig64.150.1|organism=Pylaiella littoralis U1_48|type=CDS|length=654bp|location=Sequence derived from alignment at P-littoralis_Contig64:571032..572026+ (Pylaiella littoralis U1_48)
ATGAAGATCAACTCTCAGCACTGTCCTGACGGGTGCGCGAAGCGTATCCA
TTTCATTGATCCTCGTGTGGATATGGTGTCTGTTCTTCCGGACGGAAAGT
TGTTCGAGGCCATTTCATTTTACGCCCACCACAAGGCATCACAGGGGTAT
TTCGATGATGCGGTGTTAACGATCTTTGAGTCGATCGTCCACCCTCTCTC
AAGTCTCTTGCCAGATAGAAAAAACCTCACCGGACGGCTGATAGGCGTCT
TCGAGGCGTTCAGGACAAAAATGACTCCGGTGCAGAGGGCGACTTTTGAT
AAAATATGGGTTCGTGATATCACCGGTGGAATTGGTGCAGTAAATTCCAA
GTATATTAAACTTCACGACACTTATTCTTCGTCAAAGAGAAAAAATACCC
TGTCGCTCAACAAGTTCTCTCAAGACGTGGAAGAAATCAAACAAATATAC
AAACGCTACACCAACAAGTTTATGGACGTGTGGCTCCTCGCTCACATCTT
CATGATACAGAACACAACGGGGTCCAATGGAATGGTGATGTACTTGGGGT
CGCTTCATGGCCTCGAGATAGAAAAATACCTCAGCCTTCATGGTCTTCGC
AAAATACACCACTCGGAGAGCCAAAACCTGGATTCCTGCCTTGTCCTGAA
ATAA
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