mRNA_P-littoralis_Contig64.145.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig64.145.1
Unique NamemRNA_P-littoralis_Contig64.145.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig64.145.1 vs. uniprot
Match: Q8QNJ7_ESV1K (EsV-1-76 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNJ7_ESV1K)

HSP 1 Score: 291 bits (746), Expect = 1.600e-95
Identity = 149/189 (78.84%), Postives = 159/189 (84.13%), Query Frame = 1
Query:    1 MAGKTNMNLSYKTFPDVDFSAIRFDGIRPGKNGMKFASLVGASGRRLVAESPAMTIPWKTEIRKSEETGQCSSKIALSFQGMSDDPADDGKLRRFFNFLNGVDKRVKQLAVENKSELWQKNMDEGKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGKTLLLMMSTKQWT*KLLFSGKTKLPFPLPSSKG 567
            MA KTNMNL+YKTFPDVDFSAI+FDGIR GKNGMKFASLVG +GRRLVAE+PAM IPW TEIRKSEETGQCSSKIALSFQGMSDD ADDGKLRRFFNFLNGVD+RVK+LAV+NKSELWQK MDEGKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGK        +    K++   K K P      KG
Sbjct:    1 MASKTNMNLTYKTFPDVDFSAIKFDGIRAGKNGMKFASLVGGNGRRLVAETPAMRIPWNTEIRKSEETGQCSSKIALSFQGMSDDQADDGKLRRFFNFLNGVDERVKELAVQNKSELWQKAMDEGKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGKNPSSEDVNEAMDMKIVVFRKDKTPVSPKELKG 189          
BLAST of mRNA_P-littoralis_Contig64.145.1 vs. uniprot
Match: D8LPA8_ECTSI (EsV-1-76 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPA8_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 1.430e-92
Identity = 144/189 (76.19%), Postives = 156/189 (82.54%), Query Frame = 1
Query:    1 MAGKTNMNLSYKTFPDVDFSAIRFDGIRPGKNGMKFASLVGASGRRLVAESPAMTIPWKTEIRKSEETGQCSSKIALSFQGMSDDPADDGKLRRFFNFLNGVDKRVKQLAVENKSELWQKNMDEGKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGKTLLLMMSTKQWT*KLLFSGKTKLPFPLPSSKG 567
            MA K NMNL+YKTFPDVDFSAI+FDGIR GKNGMKFA+LVG +GRRLVAE+PAM IPW TEIRKSEETGQCSSKIALSFQGMSDD  DDGKLRRFFNFLNGVDKRVK+LA +NK+ELWQK MD GKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGK      + +    K++   K K P      KG
Sbjct:    1 MASKMNMNLTYKTFPDVDFSAIKFDGIRAGKNGMKFANLVGGNGRRLVAETPAMKIPWNTEIRKSEETGQCSSKIALSFQGMSDDQEDDGKLRRFFNFLNGVDKRVKELAAQNKTELWQKTMDAGKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGKNPSSEDANEAMDMKIVVFRKDKTPVSPRELKG 189          
BLAST of mRNA_P-littoralis_Contig64.145.1 vs. uniprot
Match: A0A6H5K3E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E9_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.150e-17
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 3
Query:  378 DRSLLPELCEGVD*RQIPSY---FPGQDSFAGRENPSSDDVNEAMDMKIVVFRKDKTPVSTSELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPKSKEAEFQFTDMDDF 710
            D   +P + E  D    P Y   F  +       +P+SD   +   MKI VF   K  +S +E K GCLAS I EASY+WC P M+G++W V+ VLV+P+  E  FQFTD++ F
Sbjct:  124 DSVYVPSVKEPSD----PKYDQTFAAKIPLEDNPSPASDSPRDLKTMKISVFNTAKKAISPTECKAGCLASAIVEASYIWCAPGMVGVTWTVRSVLVKPRKPERTFQFTDVEGF 233          
BLAST of mRNA_P-littoralis_Contig64.145.1 vs. uniprot
Match: Q6XLU5_9PHYC (FirrV-1-I1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLU5_9PHYC)

HSP 1 Score: 61.2 bits (147), Expect = 1.920e-7
Identity = 25/59 (42.37%), Postives = 41/59 (69.49%), Query Frame = 3
Query:  495 EAMDMKIVVFRKDKTPVSTSELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPKS 671
            E  DM ++VF  D + ++T +++ GC A+ I E SYVWC+ + +GI+W+ K V V+P+S
Sbjct:  158 EDFDMDVMVFDMDGSRINTDQMQKGCPAAAILEPSYVWCSALGVGITWVAKQVAVQPQS 216          
BLAST of mRNA_P-littoralis_Contig64.145.1 vs. uniprot
Match: Q6XM26_9PHYC (FirrV-1-B10 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM26_9PHYC)

HSP 1 Score: 60.8 bits (146), Expect = 3.020e-7
Identity = 33/113 (29.20%), Postives = 57/113 (50.44%), Query Frame = 3
Query:  351 LAEEHG----RGQDRSLLPELCEGVD*RQIPSYFPGQDS--FAGRENPSSDDVNEAMDMKIVVFRKDKTPVSTSELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPKS 671
            ++E HG      +D  L     + +      +Y P   S  +   +   S  + E  DM ++VF  +   + T +++ GC A+ I E SYVWC+ + +GI+W+ K V ++PKS
Sbjct:  115 ISETHGAMGKNSEDTRLEASFRDSIKESATGNYPPTIQSKIWLNLKQGGSPSIVEDFDMDVMVFDLEGCQIQTDQMQKGCPAAAILEPSYVWCSALGVGITWVAKQVALQPKS 227          
BLAST of mRNA_P-littoralis_Contig64.145.1 vs. uniprot
Match: B5LWA7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWA7_9PHYC)

HSP 1 Score: 58.9 bits (141), Expect = 1.240e-6
Identity = 27/73 (36.99%), Postives = 47/73 (64.38%), Query Frame = 3
Query:  504 DMKIVVFRKDKTPVSTSELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPKSKEAEFQFTDMDDFSDVK 722
            +M ++VF  +   +S +E++ GC A+ I   SYVWC+ + +GI+W+ K V ++PK  E+ F FT   +F +V+
Sbjct:  159 EMDVMVFDMNGAQLSPTEMRKGCPAAAIIVPSYVWCSALGLGITWVAKQVAIQPKG-ESTFGFTLGSEFDEVR 230          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig64.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Q8QNJ7_ESV1K1.600e-9578.84EsV-1-76 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LPA8_ECTSI1.430e-9276.19EsV-1-76 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5K3E9_9PHAE1.150e-1741.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q6XLU5_9PHYC1.920e-742.37FirrV-1-I1 n=1 Tax=Feldmannia irregularis virus a ... [more]
Q6XM26_9PHYC3.020e-729.20FirrV-1-B10 n=1 Tax=Feldmannia irregularis virus a... [more]
B5LWA7_9PHYC1.240e-636.99Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig64contigP-littoralis_Contig64:561878..562713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size836
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-76
Ec32 orthologEc-06_006040.1
Cds size510
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791336.474905-UTR-P-littoralis_Contig64:561877..5622031680791336.474905-UTR-P-littoralis_Contig64:561877..562203Pylaiella littoralis U1_48UTRP-littoralis_Contig64 561878..562203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791336.4866822-CDS-P-littoralis_Contig64:562203..5627131680791336.4866822-CDS-P-littoralis_Contig64:562203..562713Pylaiella littoralis U1_48CDSP-littoralis_Contig64 562204..562713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig64.145.1prot_P-littoralis_Contig64.145.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig64 562204..562713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig64.145.1

>prot_P-littoralis_Contig64.145.1 ID=prot_P-littoralis_Contig64.145.1|Name=mRNA_P-littoralis_Contig64.145.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp
MAGKTNMNLSYKTFPDVDFSAIRFDGIRPGKNGMKFASLVGASGRRLVAE
SPAMTIPWKTEIRKSEETGQCSSKIALSFQGMSDDPADDGKLRRFFNFLN
GVDKRVKQLAVENKSELWQKNMDEGKIEAYFQSSVKASTNDKYPPTFQGK
IPLQEGKTLLLMMSTKQWT*
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mRNA from alignment at P-littoralis_Contig64:561878..562713-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig64.145.1 ID=mRNA_P-littoralis_Contig64.145.1|Name=mRNA_P-littoralis_Contig64.145.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=836bp|location=Sequence derived from alignment at P-littoralis_Contig64:561878..562713- (Pylaiella littoralis U1_48)
ATGGCCGGCAAGACGAACATGAACCTTAGCTACAAGACTTTCCCTGACGT GGACTTCTCGGCCATTAGGTTCGACGGCATTCGTCCGGGTAAAAACGGGA TGAAGTTTGCGAGTCTCGTCGGCGCCAGTGGGAGACGACTTGTTGCTGAG TCGCCGGCGATGACGATCCCGTGGAAAACAGAAATCAGGAAGAGTGAGGA GACTGGACAGTGTTCTTCAAAGATTGCACTGTCCTTCCAGGGAATGAGTG ATGACCCAGCAGATGACGGCAAACTTCGCCGATTCTTTAACTTCCTGAAC GGCGTCGACAAGAGGGTGAAACAGCTTGCGGTCGAGAACAAGAGCGAGCT CTGGCAGAAGAACATGGACGAGGGCAAGATCGAAGCCTACTTCCAGAGCT CTGTGAAGGCGTCGACTAACGACAAATACCCTCCTACTTTCCAGGGCAAG ATTCCTTTGCAGGAAGGGAAAACCCTTCTTCTGATGATGTCAACGAAGCA ATGGACATGAAAATTGTTGTTTTCCGGAAAGACAAAACTCCCGTTTCCAC TTCCGAGCTCAAAGGGGGTTGTCTGGCTAGCGTTATCGCAGAGGCTTCCT ATGTTTGGTGTACTCCTATGATGATTGGTATTTCTTGGATTGTGAAGTTT GTTTTGGTTGAACCAAAGTCGAAGGAAGCCGAGTTCCAGTTCACCGACAT GGATGATTTCTCGGACGTGAAAGACACCAACAACGAAGACTCCGATTCAT CCGGCAACAAGCGCAAAAGGGGATCTTCTGGGGGATCTTCTGTCGGGGAT GAAGACGATGACGACGATGATGAAGAAGAAGAATTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig64:561878..562713-

>mRNA_P-littoralis_Contig64.145.1 ID=mRNA_P-littoralis_Contig64.145.1|Name=mRNA_P-littoralis_Contig64.145.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig64:561878..562713- (Pylaiella littoralis U1_48)
ATGGCCGGCAAGACGAACATGAACCTTAGCTACAAGACTTTCCCTGACGT
GGACTTCTCGGCCATTAGGTTCGACGGCATTCGTCCGGGTAAAAACGGGA
TGAAGTTTGCGAGTCTCGTCGGCGCCAGTGGGAGACGACTTGTTGCTGAG
TCGCCGGCGATGACGATCCCGTGGAAAACAGAAATCAGGAAGAGTGAGGA
GACTGGACAGTGTTCTTCAAAGATTGCACTGTCCTTCCAGGGAATGAGTG
ATGACCCAGCAGATGACGGCAAACTTCGCCGATTCTTTAACTTCCTGAAC
GGCGTCGACAAGAGGGTGAAACAGCTTGCGGTCGAGAACAAGAGCGAGCT
CTGGCAGAAGAACATGGACGAGGGCAAGATCGAAGCCTACTTCCAGAGCT
CTGTGAAGGCGTCGACTAACGACAAATACCCTCCTACTTTCCAGGGCAAG
ATTCCTTTGCAGGAAGGGAAAACCCTTCTTCTGATGATGTCAACGAAGCA
ATGGACATGA
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