mRNA_P-littoralis_Contig64.145.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig64.145.1 vs. uniprot
Match: Q8QNJ7_ESV1K (EsV-1-76 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNJ7_ESV1K) HSP 1 Score: 291 bits (746), Expect = 1.600e-95 Identity = 149/189 (78.84%), Postives = 159/189 (84.13%), Query Frame = 1
Query: 1 MAGKTNMNLSYKTFPDVDFSAIRFDGIRPGKNGMKFASLVGASGRRLVAESPAMTIPWKTEIRKSEETGQCSSKIALSFQGMSDDPADDGKLRRFFNFLNGVDKRVKQLAVENKSELWQKNMDEGKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGKTLLLMMSTKQWT*KLLFSGKTKLPFPLPSSKG 567
MA KTNMNL+YKTFPDVDFSAI+FDGIR GKNGMKFASLVG +GRRLVAE+PAM IPW TEIRKSEETGQCSSKIALSFQGMSDD ADDGKLRRFFNFLNGVD+RVK+LAV+NKSELWQK MDEGKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGK + K++ K K P KG
Sbjct: 1 MASKTNMNLTYKTFPDVDFSAIKFDGIRAGKNGMKFASLVGGNGRRLVAETPAMRIPWNTEIRKSEETGQCSSKIALSFQGMSDDQADDGKLRRFFNFLNGVDERVKELAVQNKSELWQKAMDEGKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGKNPSSEDVNEAMDMKIVVFRKDKTPVSPKELKG 189
BLAST of mRNA_P-littoralis_Contig64.145.1 vs. uniprot
Match: D8LPA8_ECTSI (EsV-1-76 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPA8_ECTSI) HSP 1 Score: 284 bits (727), Expect = 1.430e-92 Identity = 144/189 (76.19%), Postives = 156/189 (82.54%), Query Frame = 1
Query: 1 MAGKTNMNLSYKTFPDVDFSAIRFDGIRPGKNGMKFASLVGASGRRLVAESPAMTIPWKTEIRKSEETGQCSSKIALSFQGMSDDPADDGKLRRFFNFLNGVDKRVKQLAVENKSELWQKNMDEGKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGKTLLLMMSTKQWT*KLLFSGKTKLPFPLPSSKG 567
MA K NMNL+YKTFPDVDFSAI+FDGIR GKNGMKFA+LVG +GRRLVAE+PAM IPW TEIRKSEETGQCSSKIALSFQGMSDD DDGKLRRFFNFLNGVDKRVK+LA +NK+ELWQK MD GKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGK + + K++ K K P KG
Sbjct: 1 MASKMNMNLTYKTFPDVDFSAIKFDGIRAGKNGMKFANLVGGNGRRLVAETPAMKIPWNTEIRKSEETGQCSSKIALSFQGMSDDQEDDGKLRRFFNFLNGVDKRVKELAAQNKTELWQKTMDAGKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGKNPSSEDANEAMDMKIVVFRKDKTPVSPRELKG 189
BLAST of mRNA_P-littoralis_Contig64.145.1 vs. uniprot
Match: A0A6H5K3E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E9_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 1.150e-17 Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 3
Query: 378 DRSLLPELCEGVD*RQIPSY---FPGQDSFAGRENPSSDDVNEAMDMKIVVFRKDKTPVSTSELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPKSKEAEFQFTDMDDF 710
D +P + E D P Y F + +P+SD + MKI VF K +S +E K GCLAS I EASY+WC P M+G++W V+ VLV+P+ E FQFTD++ F
Sbjct: 124 DSVYVPSVKEPSD----PKYDQTFAAKIPLEDNPSPASDSPRDLKTMKISVFNTAKKAISPTECKAGCLASAIVEASYIWCAPGMVGVTWTVRSVLVKPRKPERTFQFTDVEGF 233
BLAST of mRNA_P-littoralis_Contig64.145.1 vs. uniprot
Match: Q6XLU5_9PHYC (FirrV-1-I1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLU5_9PHYC) HSP 1 Score: 61.2 bits (147), Expect = 1.920e-7 Identity = 25/59 (42.37%), Postives = 41/59 (69.49%), Query Frame = 3
Query: 495 EAMDMKIVVFRKDKTPVSTSELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPKS 671
E DM ++VF D + ++T +++ GC A+ I E SYVWC+ + +GI+W+ K V V+P+S
Sbjct: 158 EDFDMDVMVFDMDGSRINTDQMQKGCPAAAILEPSYVWCSALGVGITWVAKQVAVQPQS 216
BLAST of mRNA_P-littoralis_Contig64.145.1 vs. uniprot
Match: Q6XM26_9PHYC (FirrV-1-B10 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM26_9PHYC) HSP 1 Score: 60.8 bits (146), Expect = 3.020e-7 Identity = 33/113 (29.20%), Postives = 57/113 (50.44%), Query Frame = 3
Query: 351 LAEEHG----RGQDRSLLPELCEGVD*RQIPSYFPGQDS--FAGRENPSSDDVNEAMDMKIVVFRKDKTPVSTSELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPKS 671
++E HG +D L + + +Y P S + + S + E DM ++VF + + T +++ GC A+ I E SYVWC+ + +GI+W+ K V ++PKS
Sbjct: 115 ISETHGAMGKNSEDTRLEASFRDSIKESATGNYPPTIQSKIWLNLKQGGSPSIVEDFDMDVMVFDLEGCQIQTDQMQKGCPAAAILEPSYVWCSALGVGITWVAKQVALQPKS 227
BLAST of mRNA_P-littoralis_Contig64.145.1 vs. uniprot
Match: B5LWA7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWA7_9PHYC) HSP 1 Score: 58.9 bits (141), Expect = 1.240e-6 Identity = 27/73 (36.99%), Postives = 47/73 (64.38%), Query Frame = 3
Query: 504 DMKIVVFRKDKTPVSTSELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPKSKEAEFQFTDMDDFSDVK 722
+M ++VF + +S +E++ GC A+ I SYVWC+ + +GI+W+ K V ++PK E+ F FT +F +V+
Sbjct: 159 EMDVMVFDMNGAQLSPTEMRKGCPAAAIIVPSYVWCSALGLGITWVAKQVAIQPKG-ESTFGFTLGSEFDEVR 230 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig64.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig64.145.1 >prot_P-littoralis_Contig64.145.1 ID=prot_P-littoralis_Contig64.145.1|Name=mRNA_P-littoralis_Contig64.145.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp MAGKTNMNLSYKTFPDVDFSAIRFDGIRPGKNGMKFASLVGASGRRLVAEback to top mRNA from alignment at P-littoralis_Contig64:561878..562713- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig64.145.1 ID=mRNA_P-littoralis_Contig64.145.1|Name=mRNA_P-littoralis_Contig64.145.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=836bp|location=Sequence derived from alignment at P-littoralis_Contig64:561878..562713- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig64:561878..562713- >mRNA_P-littoralis_Contig64.145.1 ID=mRNA_P-littoralis_Contig64.145.1|Name=mRNA_P-littoralis_Contig64.145.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig64:561878..562713- (Pylaiella littoralis U1_48)back to top |