mRNA_P-littoralis_Contig638.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig638.1.1
Unique NamemRNA_P-littoralis_Contig638.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig638.1.1 vs. uniprot
Match: A0A6H5KQT6_9PHAE (Pyr_redox_dim domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQT6_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 3.570e-32
Identity = 63/79 (79.75%), Postives = 68/79 (86.08%), Query Frame = 1
Query:  322 RGVAVSGAYVAKQRPLMAAACITVHHVQGVGFERVAVWIPSRVFFAQGQGYTAISREKTLEGLFLV*PDDPLQDREEAK 558
            RGVAVSG Y+ KQ P M AAC+TVH VQGVGFERVAVWIPSR FFAQGQGYTA+SR KTL+GLFLV PDD LQDRE A+
Sbjct:  101 RGVAVSGTYIVKQWPFMVAACMTVHRVQGVGFERVAVWIPSRGFFAQGQGYTAVSRGKTLDGLFLVLPDDVLQDRELAR 179          
BLAST of mRNA_P-littoralis_Contig638.1.1 vs. uniprot
Match: A0A1C7LPE7_GRIFR (ATP-dependent DNA helicase n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7LPE7_GRIFR)

HSP 1 Score: 65.5 bits (158), Expect = 3.950e-8
Identity = 50/164 (30.49%), Postives = 75/164 (45.73%), Query Frame = 1
Query:   43 EYADLPDVLVLHRGLKVVVTKNVWQTKGIINATCGVVRD--W--GDTIASIAAEIVEQDPTHKRPAWVEVELTTGKGSGSTVKILPFEDRNVWVPYCRGVAVSGAYVAK-QRPLMAAACITVHHVQGVGFERVAVWIPSRVFFAQGQGYTAISREKTLEGLFLV 519
            E   L   LVL RG KV++T+N+WQ  G++N   G++ D  W  G   + +   ++    T+  P     +   G   G  + I+P        P      + G  VA+ Q PL  A  +TVH  QG+    + V + S  F   G  + A+SR K L GL L+
Sbjct: 1225 EAVGLEPHLVLARGAKVMITRNIWQKHGLVNGATGIIEDIIWAEGSERSDLPIAVLVSCKTYSGPTLWRTQPREGFPEG--IPIVPI------TPIKSTFELKGKTVARTQLPLRLAWAVTVHKSQGLTLGHLRVGLGSTEF-CSGLTFVALSRAKALNGLMLI 1379          
BLAST of mRNA_P-littoralis_Contig638.1.1 vs. uniprot
Match: UPI0018E284FC (uncharacterized protein LOC119782800 n=1 Tax=Cyprinodon tularosa TaxID=77115 RepID=UPI0018E284FC)

HSP 1 Score: 64.3 bits (155), Expect = 9.780e-8
Identity = 53/175 (30.29%), Postives = 80/175 (45.71%), Query Frame = 1
Query:    1 KKLERDQGRHPIVLEYADLPDVLVLHRGLKVVVTKNVWQTKGIINATCGVVRDW--GDTIASIAAEIVEQDPTHKRPAWVEVELTT-GKGSGSTVKILPFEDRNVWVPYCRGVAVSGAYVAKQRPLMAAACITVHHVQGVGFERVAVWIPSRVFFAQGQGYTAISREKTLEGLFL 516
            K LE    + P    Y  L +VL+L +G +V++ KN+  + G++N  CG V +    +T      ++  Q   H+        L    +    +  I P EDR          A S   + +Q PL  A  +TVH VQGV  ++  V +     FA GQ Y A+SR KT+ GL +
Sbjct: 1379 KLLEGSHAKAP----YTSLSEVLLLGKGARVMLCKNIDVSDGLVNGVCGTVTEIIPAET-KDFPKKVYVQFDDHRVGVMRRKSLRCLSQDLVDSTPIEPEEDR----------ATSKGGMRRQFPLKLAWAVTVHKVQGVTVDKAVVCLDK--IFAAGQAYVALSRVKTISGLII 1536          
BLAST of mRNA_P-littoralis_Contig638.1.1 vs. uniprot
Match: A0A4S9T1T5_AURPU (ATP-dependent DNA helicase n=1 Tax=Aureobasidium pullulans TaxID=5580 RepID=A0A4S9T1T5_AURPU)

HSP 1 Score: 62.8 bits (151), Expect = 3.150e-7
Identity = 56/167 (33.53%), Postives = 80/167 (47.90%), Query Frame = 1
Query:   43 EYADLPDVLVLHRGLKVVVTKNVWQTKGIINATCGVVRDWGDTIASIAAEIVEQDPTHKRPAWVEVELTTGKGSGSTVKILPFEDRNVWVPYCRGVA----VSGAYVAKQRPLMAAACITVHHVQGVGFERVAVWIPSRVFFAQGQGYTAISREKTLEGLFLV*PDD 531
            E  DLP VL L  G +V+V +N+    G++N + G V+D    I     E+  +DP +     VE++  TG+   +     P  D +  +P  R       +   Y   Q PL+ A   TVH  Q +  ++V + I S+  F  G  YTAISR KTL GL L  P D
Sbjct: 1736 EAGDLPSVLTLTLGSRVMVMENLSIHDGVVNGSFGTVKD----IRWRQGEVPRRDPPYA--VLVELDNHTGRTLPN-----PLPDGSRVIPIFRSTHTVQHLGLTYRRTQFPLILAWATTVHRSQSLTLQKVVLDI-SQHQFTSGLLYTAISRVKTLGGLLLEEPVD 1890          
BLAST of mRNA_P-littoralis_Contig638.1.1 vs. uniprot
Match: A0A816DS98_9BILA (ATP-dependent DNA helicase n=3 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A816DS98_9BILA)

HSP 1 Score: 62.4 bits (150), Expect = 4.290e-7
Identity = 46/173 (26.59%), Postives = 84/173 (48.55%), Query Frame = 1
Query:    1 KKLERDQGRHPIVLEYADLPDVLVLHRGLKVVVTKNVWQTKGIINATCGVVRDWGDTIASIAAEIVEQDPTHKRPAWVEVELTTGKGSGSTVKILPFEDRNVWVPYCRGVAVSGAYVAKQRPLMAAACITVHHVQGVGFERVAVWIPSRVFFAQGQGYTAISREKTLEGLFLV 519
            K++++++ +H   +  +     L L +  +V++TKN+  T G+ N   G + ++ +T  +  + I+ +  + K      V      G  +   I   +  +      R +        KQ PL  +  IT+H  QG+  ++V   I ++ FF  G GYTA+SR +TLEGLFL+
Sbjct: 1641 KEIKQNESKHTKKINKS-----LRLAKNARVMITKNICVTDGLANGVTGRIVEFVETNNAHVSHIIIKCDSPKVGRLHRVSCPHCHGRDTICVIRECDSIDQQYSDVRSIKA-----IKQFPLRLSWAITIHKAQGITVDQVI--ISTKDFFGSGMGYTALSRVRTLEGLFLI 1801          
BLAST of mRNA_P-littoralis_Contig638.1.1 vs. uniprot
Match: A0A818ZNL6_9BILA (ATP-dependent DNA helicase n=6 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818ZNL6_9BILA)

HSP 1 Score: 62.4 bits (150), Expect = 4.310e-7
Identity = 46/173 (26.59%), Postives = 84/173 (48.55%), Query Frame = 1
Query:    1 KKLERDQGRHPIVLEYADLPDVLVLHRGLKVVVTKNVWQTKGIINATCGVVRDWGDTIASIAAEIVEQDPTHKRPAWVEVELTTGKGSGSTVKILPFEDRNVWVPYCRGVAVSGAYVAKQRPLMAAACITVHHVQGVGFERVAVWIPSRVFFAQGQGYTAISREKTLEGLFLV 519
            K++++++ +H   +  +     L L +  +V++TKN+  T G+ N   G + ++ +T  +  + I+ +  + K      V      G  +   I   +  +      R +        KQ PL  +  IT+H  QG+  ++V   I ++ FF  G GYTA+SR +TLEGLFL+
Sbjct: 1033 KEIKQNESKHTKKINKS-----LRLAKNARVMITKNICVTDGLANGVTGRIVEFVETNNAHVSHIIIKCDSPKVGRLHRVSCPHCHGRDTICVIRECDSIDQQYSDVRSIKA-----IKQFPLRLSWAITIHKAQGITVDQVI--ISTKDFFGSGMGYTALSRVRTLEGLFLI 1193          
BLAST of mRNA_P-littoralis_Contig638.1.1 vs. uniprot
Match: A0A4V4HBA8_DENBC (ATP-dependent DNA helicase (Fragment) n=1 Tax=Dendrothele bispora (strain CBS 962.96) TaxID=1314807 RepID=A0A4V4HBA8_DENBC)

HSP 1 Score: 60.8 bits (146), Expect = 1.100e-6
Identity = 49/162 (30.25%), Postives = 79/162 (48.77%), Query Frame = 1
Query:   55 LPDVLVLHRGLKVVVTKNVWQTKGIINATCGVVRDWGDTIASIAAEIVEQDPTHKRPAWVEVELTTGKGSGSTVKILPFEDRNVWVPYC------RGVAVSGAYVAK-QRPLMAAACITVHHVQGVGFERVAVWIPSRVFFAQGQGYTAISREKTLEGLFLV 519
            L + +VL RG KV+VT+N+WQ KG++N T G + D      ++ +++         P  V +E  T  G  S  +  P ED    VP        +    +G + ++ Q PL  A  +TVH  QG+   +V + +  + F   G  + A+SR K L GL ++
Sbjct:  531 LENEIVLARGAKVMVTRNLWQNKGLVNGTIGYIADIIWAPGTVRSDL---------PLAVLIECKTYTGP-SIWRTEPREDFPQGVPIVPILVLKQNFEYNGRHCSRMQVPLRLAWAVTVHKSQGLTMSKVQIGLGKKEFCI-GLTFVALSRVKDLGGLMIL 681          
BLAST of mRNA_P-littoralis_Contig638.1.1 vs. uniprot
Match: A0A0F9ZN00_9BACT (Pif1, pif, PIF1 5'-to-3' DNA helicase-like protein, ATP-dependent DNA helicase PIF1 n=1 Tax=Candidatus Peregrinibacteria bacterium GW2011_GWC2_33_13 TaxID=1619061 RepID=A0A0F9ZN00_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 1.240e-6
Identity = 49/158 (31.01%), Postives = 69/158 (43.67%), Query Frame = 1
Query:   43 EYADLPDVLVLHRGLKVVVTKNVWQTKGIINATCGVVRDWGDTIASIAAEIVEQDPTHKRPAWVEVELTTGKGSGSTVKILPFEDRNVWVPYCRGVAVSGAYVAKQRPLMAAACITVHHVQGVGFERVAVWIPSRVFFAQGQGYTAISREKTLEGLFL 516
            +Y   P +L L  G KV++ KN    KG+IN +CG+VR           +I E     K    +E  +T                +N +  Y  G  VS      Q PL  A  IT+H  QG+  + + V       F  GQ Y A+SR KT++GL+L
Sbjct:   71 KYCKAPQILELKEGCKVMLLKNHNFAKGLINGSCGIVR-----------KIEENAVLVKFDNGIEESIT----------------KNTFEYYREGELVSSR---DQYPLRLAYGITIHKSQGMTLDELVV--DCNRIFECGQAYVALSRIKTIDGLYL 196          
BLAST of mRNA_P-littoralis_Contig638.1.1 vs. uniprot
Match: A0A819EY78_9BILA (ATP-dependent DNA helicase n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A819EY78_9BILA)

HSP 1 Score: 60.5 bits (145), Expect = 1.490e-6
Identity = 44/153 (28.76%), Postives = 74/153 (48.37%), Query Frame = 1
Query:   67 LVLHRGLKVVVTKNVWQTKGIINATCGVVRDWGDTIASIAAEIVEQ--DPTHKRPAWVEVELTTGKGSGSTVKILPFEDRNVWVPYCRGVAVSGAYVAKQRPLMAAACITVHHVQGVGFERVAVWIPSRVFFAQGQGYTAISREKTLEGLFLV 519
            L L R  +V++TKN+    G+ N   G V ++ ++  +  + I+ +   PT  R   V      G+ +    +     DR  +V       +      KQ PL  +  +T+H  QG+  ++V   I ++  F  G GYTA+SR +TLEGLF++
Sbjct:  160 LRLARNARVMITKNICVNDGLANGVTGHVGEFVESNNTEVSHIIMKCDSPTIGRLHRVSCSHCHGRDTICVTRESDIIDRQDFV-------LQSKKAVKQFPLHLSWAMTIHKAQGITVDQVV--ISTKDLFGSGMGYTALSRVRTLEGLFII 303          
BLAST of mRNA_P-littoralis_Contig638.1.1 vs. uniprot
Match: A0A0C3BX73_HEBCY (Uncharacterized protein (Fragment) n=1 Tax=Hebeloma cylindrosporum h7 TaxID=686832 RepID=A0A0C3BX73_HEBCY)

HSP 1 Score: 58.9 bits (141), Expect = 3.090e-6
Identity = 56/186 (30.11%), Postives = 78/186 (41.94%), Query Frame = 1
Query:   58 PDVLVLHRGLKVVVTKNVWQTKGIINATCGVVRD-WGDTIASIAAEIVEQDPTHKRPAWVEVELT--TGKGSGSTVKILPFEDRNVWVPYCRGVA-----VSGAYVAKQRPLMAAACITVHHVQGVGFERVAVWIPSRVFFAQGQGYTAISREKTLEGLFL--V*PDDPLQDREEAKSSSWMHFTL 585
            P++L L  G KV+VT+N+W  KG++N   G+V+  W              +P    PA V +E    +G  +     I P      WVP     A        A    Q PL  A  IT+H  QGV  +   + +  + F A G  + AISR KTL GL      P   L   EE  S   ++  +
Sbjct:  184 PEIL-LAEGAKVMVTRNLWTAKGLVNGAQGIVKKIWYSA---------RTNPREHLPAVVFIECKGYSGPNNAGWEGIEPH-----WVPIVPVTARWEDRTGKALSRTQLPLALAWAITIHKSQGVTLDEATIELGPKDFQA-GLSFVAISRVKTLSGLVFRTAFPHSRLLRTEETASMQMLNLDI 353          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig638.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQT6_9PHAE3.570e-3279.75Pyr_redox_dim domain-containing protein n=1 Tax=Ec... [more]
A0A1C7LPE7_GRIFR3.950e-830.49ATP-dependent DNA helicase n=1 Tax=Grifola frondos... [more]
UPI0018E284FC9.780e-830.29uncharacterized protein LOC119782800 n=1 Tax=Cypri... [more]
A0A4S9T1T5_AURPU3.150e-733.53ATP-dependent DNA helicase n=1 Tax=Aureobasidium p... [more]
A0A816DS98_9BILA4.290e-726.59ATP-dependent DNA helicase n=3 Tax=Rotaria sp. Sil... [more]
A0A818ZNL6_9BILA4.310e-726.59ATP-dependent DNA helicase n=6 Tax=Rotaria sp. Sil... [more]
A0A4V4HBA8_DENBC1.100e-630.25ATP-dependent DNA helicase (Fragment) n=1 Tax=Dend... [more]
A0A0F9ZN00_9BACT1.240e-631.01Pif1, pif, PIF1 5'-to-3' DNA helicase-like protein... [more]
A0A819EY78_9BILA1.490e-628.76ATP-dependent DNA helicase n=1 Tax=Rotaria sordida... [more]
A0A0C3BX73_HEBCY3.090e-630.11Uncharacterized protein (Fragment) n=1 Tax=Hebelom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig638contigP-littoralis_Contig638:2401..3471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1035197.HMPREF9999_00273
Preferred nameuvrD2
PFAMsHRDC,HTH_40,Herpes_Helicase,PIF1,UvrD_C_2
Model size903
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.18e-07
EggNOG OGsCOG0507@1|root,COG0507@2|Bacteria,4NF6J@976|Bacteroidetes,2FM19@200643|Bacteroidia,1WDNA@1283313|Alloprevotella
DescriptionPIF1-like helicase
Cds size522
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791328.524554-UTR-P-littoralis_Contig638:2400..27801680791328.524554-UTR-P-littoralis_Contig638:2400..2780Pylaiella littoralis U1_48UTRP-littoralis_Contig638 2401..2780 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791328.5374308-CDS-P-littoralis_Contig638:2780..32121680791328.5374308-CDS-P-littoralis_Contig638:2780..3212Pylaiella littoralis U1_48CDSP-littoralis_Contig638 2781..3212 -
1680791328.5486805-CDS-P-littoralis_Contig638:3381..34711680791328.5486805-CDS-P-littoralis_Contig638:3381..3471Pylaiella littoralis U1_48CDSP-littoralis_Contig638 3382..3471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig638.1.1prot_P-littoralis_Contig638.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig638 2781..3471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig638.1.1

>prot_P-littoralis_Contig638.1.1 ID=prot_P-littoralis_Contig638.1.1|Name=mRNA_P-littoralis_Contig638.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=174bp
KKLERDQGRHPIVLEYADLPDVLVLHRGLKVVVTKNVWQTKGIINATCGV
VRDWGDTIASIAAEIVEQDPTHKRPAWVEVELTTGKGSGSTVKILPFEDR
NVWVPYCRGVAVSGAYVAKQRPLMAAACITVHHVQGVGFERVAVWIPSRV
FFAQGQGYTAISREKTLEGLFLV*
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mRNA from alignment at P-littoralis_Contig638:2401..3471-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig638.1.1 ID=mRNA_P-littoralis_Contig638.1.1|Name=mRNA_P-littoralis_Contig638.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1071bp|location=Sequence derived from alignment at P-littoralis_Contig638:2401..3471- (Pylaiella littoralis U1_48)
AAGAAATTAGAACGCGACCAAGGACGGCACCCCATCGTGCTCGAGTACGC CGATCTGCCTGACGTACTGGTGCTTCATCGAGGACTCAAGGTGCCAAGAC TAGGACGCGCTTACACTTAATTGCCATGCATTTCAGAACGGTATTCTGAC ATCTTTACGGCCTCAAGGCATATGCACTCCCTAGGCGACAACCCAACCAC GCACCCCCGCCGACATTCCACCCCATCCGCCTTTGCTGTGCGGCATGCAT CAACTACAGGTTGTCGTCACCAAGAACGTCTGGCAGACCAAGGGCATCAT TAACGCTACCTGCGGCGTGGTTCGCGACTGGGGTGACACGATCGCCTCGA TCGCGGCGGAAATCGTCGAACAGGATCCTACCCACAAACGTCCAGCGTGG GTGGAGGTCGAACTCACGACCGGAAAAGGTTCTGGTTCCACCGTCAAGAT ACTACCGTTCGAGGATAGGAATGTGTGGGTACCATACTGTAGGGGTGTCG CTGTCAGTGGGGCATACGTCGCCAAGCAAAGGCCGCTCATGGCCGCCGCT TGCATCACCGTGCATCATGTACAAGGGGTGGGGTTCGAACGAGTTGCTGT ATGGATCCCTAGCAGGGTCTTCTTCGCGCAAGGACAAGGGTACACGGCTA TTTCGAGGGAAAAAACACTTGAGGGTCTTTTCCTAGTTTAGCCAGATGAC CCCCTGCAAGACAGAGAGGAGGCGAAAAGTTCCTCGTGGATGCATTTCAC CCTCCTCTAGACGTCATAAACGCTCTCGACGATATGCGCACAAAGGCGCC GGCGACAGTTTCCGTTGTCATCAGAGGAAGGGGAGTGCCGTACGCCACAC TTTGGGATAGCCGTAAGCGGTATCCACCCCCACAGGTTGGAACCACTTTA GGCCTGGGCTTGGACCAATCGCACTCGAGGAATATAAACTTCGTGATGAC TCATCTTGCCCATCTTACGCCGTCGAAGGCGATTAGTTTGGTTTTGGGTT GGGTTTGGCTTACTTCGGTTGGGTTCGGTTGGGTCTGGTAGGTTACGGTT GAGTTAGGTCGTATTGTGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig638:2401..3471-

>mRNA_P-littoralis_Contig638.1.1 ID=mRNA_P-littoralis_Contig638.1.1|Name=mRNA_P-littoralis_Contig638.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=522bp|location=Sequence derived from alignment at P-littoralis_Contig638:2401..3471- (Pylaiella littoralis U1_48)
AAGAAATTAGAACGCGACCAAGGACGGCACCCCATCGTGCTCGAGTACGC
CGATCTGCCTGACGTACTGGTGCTTCATCGAGGACTCAAGGTTGTCGTCA
CCAAGAACGTCTGGCAGACCAAGGGCATCATTAACGCTACCTGCGGCGTG
GTTCGCGACTGGGGTGACACGATCGCCTCGATCGCGGCGGAAATCGTCGA
ACAGGATCCTACCCACAAACGTCCAGCGTGGGTGGAGGTCGAACTCACGA
CCGGAAAAGGTTCTGGTTCCACCGTCAAGATACTACCGTTCGAGGATAGG
AATGTGTGGGTACCATACTGTAGGGGTGTCGCTGTCAGTGGGGCATACGT
CGCCAAGCAAAGGCCGCTCATGGCCGCCGCTTGCATCACCGTGCATCATG
TACAAGGGGTGGGGTTCGAACGAGTTGCTGTATGGATCCCTAGCAGGGTC
TTCTTCGCGCAAGGACAAGGGTACACGGCTATTTCGAGGGAAAAAACACT
TGAGGGTCTTTTCCTAGTTTAG
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