prot_P-littoralis_Contig636.38.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig636.38.1
Unique Nameprot_P-littoralis_Contig636.38.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length502
Homology
BLAST of mRNA_P-littoralis_Contig636.38.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 4.490e-37
Identity = 99/315 (31.43%), Postives = 158/315 (50.16%), Query Frame = 0
Query:    1 MRWIHLPLLVLAFCPSSMPTAAAVEGTQDATITGVQTEKELLPRSAGRGSRACEQHPGVLDMRLQCVMPGENSRSVYTPIGGCRMHLTIGDGQCGYRAVGGALIKSKGYARSKTVEDLKRLTQEAAIRHIMQGATPAXXXXXXXXXXTEEFGNRLISRDQLDRARSLRLSQIRDLWGELVDEVDPSERTADWVDKTVKKRVEEDWLDVTWLGLLADNLGVNIVLWEPSGIDRLLRIYSAGGSKGLFLYDKKDRMDEEGDHWLHLLYHTDSRPFTARAEITLSQDDPVAHNHFTWIDLGSDAVTDFITAMSSRQQQ 315
            MR   L LL + F  SSM T A    +    +  V   +EL P  +  G R  E   G   + ++C         V TP+ G  +H   GDG+CG+ A+   L    G AR+   + ++      A+ H++ GA               E    ++S+DQL RA S+++  +    G++   +   ++T  W     ++  E+ W+D+TW+  LA   GVNI++WEPS     ++ YS   + G+FL++K+D+MDEEGDHW+HLLY   + P+ AR     +Q+  +  NHF  + LG DAV  F+  ++S + Q
Sbjct:    1 MRPFFLVLLAI-FRTSSMNTPAVDSDSDHQVVFRVDKRQELAPPPSALGRRVQEHIGGPQALSMKCSTTLIQGGRVITPLAGAGVHTVEGDGKCGWNALRAGLQACLGRARTPNEQQMRAAVARRAMEHVV-GAPDVP-----------EDSTAVLSKDQLGRALSVKVPHVL---GDVEHGMAAEDKTVRWFCDLARQSAEK-WVDITWMSFLASEYGVNIMVWEPSAKHGTVQAYSGNNTAGMFLFEKEDKMDEEGDHWVHLLYREHANPWLAR-----NQNHNL--NHFDRLQLGHDAVASFVEVVASAKLQ 291          
BLAST of mRNA_P-littoralis_Contig636.38.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.120e-20
Identity = 57/161 (35.40%), Postives = 94/161 (58.39%), Query Frame = 0
Query:  155 LISRDQLDRARSLRLSQIRDLWGELVDEVDPSERTADWVDKTVKKRVEEDWLDVTWLGLLADNLGVNIVLWEPSGIDRLLRIYSAGGSKGLFLYDKKDRMDEEGDHWLHLLYHTDSRPFTARAEITLSQDDPVAHNHFTWIDLGSDAVTDFITAMSSRQQQ 315
            ++S+ QL RA S+++  +    G++   +   ++T  W      +  E+ W+DVTW+  LA   GVNI++WEPS     ++ Y    + G+FL++K+D+MDEEGDHW+HLLY   + P+ AR     +Q+  +  NHF  + LG DA   F+  ++S + Q
Sbjct:   53 VLSKRQLGRALSVKVPHVL---GDVEHGMAAEDKTVRWFCDLAWQSAEK-WVDVTWMSFLASEYGVNIMVWEPSAKHGTVQAYLGNNTAGMFLFEKEDKMDEEGDHWVHLLYREHANPWLAR-----NQNHNL--NHFDRLQLGHDAAASFVDVVASAKLQ 202          
BLAST of mRNA_P-littoralis_Contig636.38.1 vs. uniprot
Match: A0A6H5KFV5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFV5_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.390e-20
Identity = 49/109 (44.95%), Postives = 71/109 (65.14%), Query Frame = 0
Query:  203 EDWLDVTWLGLLADNLGVNIVLWEPSGIDRLLRIYSAGGSKGLFLYDKKDRMDEEGDHWLHLLYHTDSRPFTARAEITLSQDDPVAHNHFTWIDLGSDAVTDFITAMSS 311
            E W+DVTW+  LA   GVNI++WEPS     ++ YS   + G+FL++K+D+MDEEGDHW+HLLY   + P+ AR     +Q+  +  NHF  + LG DAV  F+  ++S
Sbjct:  325 EKWIDVTWMSFLASEYGVNIMVWEPSAKHGTVQAYSGNNTAGMFLFEKEDKMDEEGDHWVHLLYREHANPWLAR-----NQNHNL--NHFDRLQLGHDAVASFVEVVAS 426          
BLAST of mRNA_P-littoralis_Contig636.38.1 vs. uniprot
Match: A0A6H5KNV0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV0_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.930e-17
Identity = 94/307 (30.62%), Postives = 144/307 (46.91%), Query Frame = 0
Query:  211 LGLLADNLGVNIVLWEPSGIDRLLRIYSAGGSKGLFLYDKKDRMDEEGDHWLHLLYHTDSRPFTARAEITLSQDDPVAHNHFTWIDLGSDAVTDFITAMSSRQQQQ---------------QEGGT---------------GPL-RGARKRTGTTQSRDKQ----KRKQPDQPPKGNGGTSKKPGLETPQPLDKPAKIEKG-------------------VKKRRARK----GGDDK--VVKEKDVCYDSDGNIGGGD--DFESAGAFACLTINPRKLTSDIGKIPEIAYKRAFLKSSQRKALGLKV 455
            + LLA   GVNI+LWEPS     ++ YS   + G+ L++K+D+MDEEGDHW+HLLY   + P+ AR     +Q+  +  NHF  + LG DAV  F+  ++S + Q                + GG+               GPL RG+     ++ +  +Q    K K+    PK  G T  +PGL   +   +  +   G                   V K+++R     GG  +    K            GGGD    ++ GAFA ++ N +KL + + KIPE  YKRAF  +++R+ALG+K+
Sbjct:    1 MSLLASEYGVNIILWEPSAKHGTVQAYSENNTAGMLLFEKEDKMDEEGDHWVHLLYREHANPWLAR-----NQNHNL--NHFDRLQLGHDAVASFVEVVASAKLQLGTVTLMPSAIYTAGGEAGGSSMVGGEEEDHPEFSMGPLPRGSNSSRSSSGTEGRQAGARKTKKGKVGPKVVGST--RPGLRQGRSARRWLRRGSGXXXXXXXXXXXXXXXXMGEVPKKKSRLHRLVGGTPRRPTAKTTMPTMIPTAASGGGDVDHKQTPGAFATMSQNQKKLVTAMKKIPERGYKRAFWLTNKRRALGMKL 298          
BLAST of mRNA_P-littoralis_Contig636.38.1 vs. uniprot
Match: A0A6H5K2B4_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B4_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 9.180e-15
Identity = 51/131 (38.93%), Postives = 75/131 (57.25%), Query Frame = 0
Query:  187 ERTADWVDKTVKKRVEEDWLDVTWLGLLADNLGVNIVLWEPSGIDRLLRI--YSAGGSKGLFLYDKKDRMDEEGDHWLHLLYHTDSRPFTARAEITLSQDDPVAHNHFTWIDLGSDAVTDFITAMSSRQQQ 315
            E+T  W      + V+  W+D+TW+  LA   GVNI     +G     RI  YS   + G+FL++K+D+MDEEGDHW+HLLY   + P+ AR     +Q+  +  NHF  + LG DAV  F+  ++S + Q
Sbjct:    5 EKTVRWFCDLAWQSVK--WVDITWMSFLASEYGVNI-----TGCPSWSRIQTYSGNNTAGMFLFEKEDKMDEEGDHWVHLLYREHANPWLAR-----NQNHNL--NHFDRLQLGHDAVASFVEVVASAKLQ 121          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig636.38.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JW40_9PHAE4.490e-3731.43HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5JJP9_9PHAE1.120e-2035.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFV5_9PHAE1.390e-2044.95Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KNV0_9PHAE1.930e-1730.62DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5K2B4_9PHAE9.180e-1538.93DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 331..346
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 486..501
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 306..321
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 453..501
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 368..387
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 306..387

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig636contigP-littoralis_Contig636:151077..154139 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig636.38.1mRNA_P-littoralis_Contig636.38.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig636 148189..154139 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig636.38.1 ID=prot_P-littoralis_Contig636.38.1|Name=mRNA_P-littoralis_Contig636.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=502bp
MRWIHLPLLVLAFCPSSMPTAAAVEGTQDATITGVQTEKELLPRSAGRGS
RACEQHPGVLDMRLQCVMPGENSRSVYTPIGGCRMHLTIGDGQCGYRAVG
GALIKSKGYARSKTVEDLKRLTQEAAIRHIMQGATPAAAAAAAAPPPTEE
FGNRLISRDQLDRARSLRLSQIRDLWGELVDEVDPSERTADWVDKTVKKR
VEEDWLDVTWLGLLADNLGVNIVLWEPSGIDRLLRIYSAGGSKGLFLYDK
KDRMDEEGDHWLHLLYHTDSRPFTARAEITLSQDDPVAHNHFTWIDLGSD
AVTDFITAMSSRQQQQQEGGTGPLRGARKRTGTTQSRDKQKRKQPDQPPK
GNGGTSKKPGLETPQPLDKPAKIEKGVKKRRARKGGDDKVVKEKDVCYDS
DGNIGGGDDFESAGAFACLTINPRKLTSDIGKIPEIAYKRAFLKSSQRKA
LGLKVTERQDTHSPSHRCRRRIRLDAKSSSEEGGLPCGRRGRHQSSDRRY
G*
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